RNA id: XM_036967394.1


Basic Information

Item Value
RNA id XM_036967394.1
length 5544
RNA type mRNA
GC content 0.51
exon number 27
gene id LOC110520786
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7221996 ~ 7320978 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggggagggggagagaagcggTAATGGTATGACACACTCCTAATCTATAACCGGAGACGCAGACGGGACAGGACTGGACCAAGAGTGTTCGGTGCAGCTCCCGGAGCGTCTGTCTCTGCGCAAGATGCTCAGCAGAACCGGGGAAAACCTATCGACCGATTAACTCCGTTAGTCCCTGTTAGGTTAAGGAAGAGAGTCAGAATGACTATCCCCAAAGATATTCCTGAAAAGTGGTTCCCCATCGTTCTTCCACTGCAACAGAAGAAACAACAAGGACTAGCTGCTAAAACCAAGAAGACGTGGACAGaggaggagaggagggtccgGGCCAATGACAGAGAATACAACGAGAAGTTTCAGTATGCGttgatTCCTCAGATCTCGTCTCTCTCCTGGTTCACCACCATAGTGCCTTTAGTCCTGGTGCTCAGCATCACTGCAGTAAAGGATGCCACCGATGACTACTTCCGTCACAAGAGTGACAACCAGGTGAACAACCGGCAGTCTCAGGTCGTCATCCAGGGCTCTCTTCAGAAGGAGAAGTGGATGAATGTAAGAGTGGGTGATATCATTAAACTGGAGAATAACCAGTTTGTGGCAGCTGACCTTCTCTTACTGTCCAGTAGTGAGCCTCATAGCCTCTGTTACATCGAGACCGCAGAGCTAGATGGGGAGACCAATATGAAGGTGCGTCAGTCTCTGTCTGTGACTGCAGAGCTGGGAGACCCCAACAGCCTGGCCTCTTTTGATGGTGAGGTGGTCTGTGAGCCTCCCAACAACAAGCTGGACAGGTTCTGTGGTCTTCTGTGCTGGAGAGATTGTAAATACCCCCTGAGCAACCACAACATGTTACTACGAGGCTGTGTTCTCCGCAACACAGAGACCTGCTACGGACTGGTCATCTTTGCAGGCCCAGACACCAAGCTGATGCAGAATAGTGGTCGCACCAAGTTCAAACGCACAAGCATCGACCGCCTCATGAACACACTGGTGCTCTGGATCTTTGGCTTCATGGTGTGTATGGGTGTGATCCTGGCTGTGGGGAAcgctgtgtgggagagagaggtgggttctCTGTTCCAGAGTTACCTGGCCTGGGACCTGCCTGTAGACAACTTCCTGTTCTCTGCTTTCCTCTCCTTCTGGTCCTACGTCATCATTCTCAACACCGTGGTGCCCATCTCACTCTACGTCAGTGTGGAGGTGATTAGGCTGGGTCATAGTTACTTTATAAACTGGGACAGGAAGATGTTCTGTCCACAGTGTAACACAGCAGCTGAAGCCAGGACCACCACTCTCAACGAGGAACTGGGACAGGTGGAGTACATCTTCAGTGACAAGACAGGAACTCTCACTCAGAACATCATGAGCTTCAGCAAGTGCTCTATCAATGGACATGCCTATGGTGAGGTGATCGACCCGTTGGGAGCACAGCCAAAGAGGCTAGACTTCTCTTCCTTCAACCCCCTGGCGGACCCTGACTTCTGTTACTATGACAACGGTCTGCTGAAGTCGGTGAAGCTGGGAGACCTTCACAGCCACGAGTTCTTCCGGCTGCTTTCCCTCTGTCACACCGTCATGagtgaggagaagaaggaggGAGAGTTGATGTATAAGGCCCAGTCTCCAGATGAGGGTGCATTGGTGACAGCAGCCAGGAACTTTGGTTTTGTGTTCCGGTCTAGAACCCCTGGTACTGTCACTGTGACAGAGCTGGGCCGACCCGTCACATACACACTGCTGGCCATCCTCGACTTCAACAACATCCGCAAGAGGATGTCCGTTATAGtGCGTAACCCCGAGGGGAGGATCCGTCTATACTGTAAAGGAGCTGATACTCTGTTGTTTGAGAGGCTCCACTCCTCCAACAATCACCTGATGAACATCACAACAGATCACCTTAATGAGTATGCTGGGGACGGTCTGCGGACCCTGGCCCTGGCCTACAGAGACCTGTCAGAGGAGCAGTGGGAGGAGTGGTCAGAGAGACACCGCCAAGCAGACAGAGCTACAGACTGTAGAGAGGACAGACTGGCTGACATATATGAATACATAGAACAGGACATGATGctCCTGGGAGCCACAGCCATAGAGGATAAGCTACAGGAGGGAGTTCCTGAGACCATCGCTATTCTCTCTCTTGCTAACATCAAGATCTGGGTCCTCACTGGAGACAAACAggAGACAGCAGTTAATATAGGTTACTCCTGTAAGATGCTGACTGGTGATATGACTGAGGTGTTCATCATCAGTGGAAACACAGTGCTGAGTGTTAGAGAGGAACTCAGgagagcgagggagaggatgATAGAGTTTGCCCGtacgagagagggaggaaaggaggaggggatggagggatggggcgAGGCCTGTTCTCTGGGGAATGGGTTTgggggagacgggggaggagatgggagagagtggCCCTCCGTGGGGGACAAACAGCAGCAGTGTCCCCCTCCCCCTGGCCCTCCCGCCCCTCGACCCCCCTCCTCAACCACGCTAGACTCCATATCTGGAGAGTTCGCCCTCGTCATCAACGGACATAGCCTGgcCCATGCGTTGGAGGCTGATATGGAGGGGGAGTTTGTGTCAACAGCGTGTGTCTGTAGAGCAGTGATCTGCTGCAGGGTGACTCCTCTACAGAAAGCCCTGGTGGTGGAGCTCATCAAGAAACACAAGAAAGCTGTCACCCTGGCCATAGGAGACGGGGCTAATGATGTTAGCATGATCAAgaCGGCTCATATAGGAGTGGGCATCAGTGGTCAGGAGGGCATCCAGGCAGTGCTGGCGTCTGACTACTCCTTCTCCCAGTTCCGCTTCCTCCAGCGCCTGCTGCTGGTCCACGGACGCTGGTCCTACCTCCGCATGTGTCGCTTCCTCTGCTACTTCTTCTACAAGAACTTTGCCTTCACCATGGTGCACTTCTGGTTTGGCTTCTTCTGTGGCTTCTCTGCCCAGacagtaTATGATCAGTACTTCATCACTCTCTATAACATcgtctacacctctctccccgtGCTGGCCATGGGAATATTTGACCAGGACGTCCCAGAGCAGCGTAGTCTGGAGTATCCTAAGCTGTATGAGCCAGGTCAGCTTAACCTGCTGTTCAACAAGAGAGAGTTCTTCATCTGTATAACCCAGGGTATCTACACTAGTGTTGTGTTGTTCTTCGTACCCTATGCCATCCTGTCCCACGGAACCCAGGGCACCGGGGAACCCCTCGCTGACTACCAGACCTTTGCTGTTACCACGGCCACCGCCCTGGTGATCGTGGTCAGTGTGCAGattgctctGGACACAGGCTACTGGACAGCCATCAACCATTTCTTTGTGTGGGGCTCTGTGGGCTCCTTCTTCACCATCATGTTGGCTATGCACAGCCAGACTCTATTCAGCATCTTTCCCAACCAGTTCCACTTCGTTGGCAGTGCCCAGAGCACACTGGTCCAGCCGCTGGTGTGGCTGACCATCGTCTTGGCCACAGTGATCTGCATCGTTCCAGTTCTGGCTTTCCGATTCCTCAAACTGGACCTGAAACCACAGCTCTCTGATACGgtGCGTTACACCCAGCTGGTGCGTCAGAAGACGAGGAAGCCAGCGGGTCGATGCATGGGAGGAGTCAGGGGCGGGGGCGTGCCTGAGGGTCGTCTGGGGGCAAGGGGGGGGTTCAGGAGGTCAGGATATGCCTTTGCCCACCAGGAGGGCTTTGGGGAGCTCATCACCTCTGGGAAGAACATGAGACTGTCCTCCCTGGCCCTGGCCAACTTTGCCTCCAGACACAGCTCCAGCTGGATAGACACCCTGCGCAAAAAGAAACACTCAAATACACATCCCCCGCAGAGCGCCTCGGGAGAGAGCAGCCCGGCACCTAGCTATGTGTCGGGATCGGCTCCCCCCCTGTCCAATTCATCCTCTCTCCTGGGGGGGTCGCAGGATACTCCCCTGGAGGAGGGAACACACACGCTGCCTGTCATACTCCCACAGGTGGCTTCTGGCCCTCCCACAAACACACCAGCGTTAGCTCCAGCCCAGGTCCCCTCTGCTGACGCTCTCACTCCCACCTCTGTGAGGAGTCCTGGGGGAGACTCGGTTGGTGGCTGGAACCTTAGTCTGGGCGCTGTACAGGATGCTCTATTTGGTTGGAGGGGCGGCGCCTCTCGCACCAGCGGAACCAGCAGCCCGGGACCTCCCCCTGTTCCCAAGGAAACCAACCACACCGTgtgagacggacagacagatggacagatgaTTTAAAGAAGAAGGACAGGCTGTCATATCCCACTGGATTCTCTTGGAATACGTGAAGAAATACTGCATTTGGAAGTTTGGAATACTGAAGGAGGAATGTTTGGAATGGCACTTAGGAAGAGATCCAAAGTGGCAGCCAATGTAGGCGGAAGGCATACACACCCATCAACACCCACTGGCATTTGTATGACACTGTCGTTGCAATAGTGTTGATACATATATGTATCCGTCTGAAagactactgtgattattattatttgaccatgctgttctgttataatctccacccggcacagccagaagaggactggccacccctcatagcctggttcctctctaggtttcttcctaggttttggcctttctagggagtttttcctagccactgtgcttctacacctgcattgcttgctgtttggggttttaggctgggtttctgtacagcactttgagatatcagctgatgtaagaagggctatataaatacatttttatttgaaatCAATTTTATTTGAAAGATGGTGTGTGGTAGTTGTGATAGACATGCTCAGACTATCCACAACCCACTTATCTGTCTTCTTCAACCAATGAGGCAGGCTGAAAGAAGCACTTCTTCATGCAAATGATGTAACCATCTGCTGAAGAGCTTGGTACCACAGGGTTCCGGACAGAAACCCCCCTCCAACAGCACCGTTGTGGTTCAGACATGACTATACTATTTATACAATGGATCATATGTCATAACATCATATCAGATTGGTTCAAAACAAAGTATTGAATTGAGTCTTTATGACAGAAGAGAGGTTCATTTGATGGTCAGAAAGGTGGTGAATTGAGTCTTTATGACAGAAGAGAGGTTCATTTGATGGTCAGAAAGGTGGTGAATTGAGTCTTTATGACAGAAGAGAGGTTCATTTGATGGTCAGAAAGGTGGTGAATTGAGTCTTTATGACAGAAGAGAGGTTCATTTGATCATCAGAAAGGTGGTGAATTGAGTCTTTATGACAGAAGAGAGGTTCATTTGATCATCAGAAAGGTGGTGAATTGAGTCTTTATGGCAGAAGAGAGGTTTATTTGATCATCAGAAAGGTGGTGAATTGAGTCTTTATGACAGAAGAGAGGTTCATTTGATGGTCAGAAAGGTGGTGAATTGAGTCTTTATGACAGAAGAGAGGTTCATTTGATCATCAGAAAGGTGGTGAATTGAGTCTTTATGACAGAAGAGAGGTTCATTTGATCATCAGAAAGGTGGTGAATTGAGTCTTTATGACAGAAGAGAGGTTCATTTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251877 lncRNA downstream 2594 7158585 ~ 7219402 (-) True il6r
TU251860 lncRNA downstream 66773 7154745 ~ 7155223 (-) True G220722
TU251327 lncRNA downstream 101493 7120287 ~ 7120503 (-) True G220281
TU251324 lncRNA downstream 103276 7118482 ~ 7118720 (-) True G220278
TU251318 lncRNA downstream 106104 7115603 ~ 7115892 (-) True G220272
TU251945 lncRNA upstream 324 7290866 ~ 7291132 (-) True G220790
TU251946 lncRNA upstream 755 7291297 ~ 7291551 (-) True G220791
TU251947 lncRNA upstream 1295 7291837 ~ 7292049 (-) True G220792
TU251949 lncRNA upstream 7623 7298165 ~ 7298402 (-) True G220794
TU251951 lncRNA upstream 9541 7300083 ~ 7300316 (-) True G220796
XM_036963735.1 mRNA downstream 1916 7209694 ~ 7220080 (-) False il6r
XM_036963718.1 mRNA downstream 1918 7207921 ~ 7220078 (-) False il6r
XM_036963724.1 mRNA downstream 1918 7207921 ~ 7220078 (-) False il6r
XM_036963716.1 mRNA downstream 1921 7207921 ~ 7220075 (-) False il6r
NM_001281406.1 mRNA downstream 3162 7207921 ~ 7218834 (-) False il6r
XM_036975430.1 mRNA upstream 32494 7323036 ~ 7343283 (-) True LOC110536068
XR_005040374.1 mRNA upstream 74875 7365417 ~ 7394498 (-) False LOC110537383
XM_036967433.1 mRNA upstream 74875 7365417 ~ 7394499 (-) True LOC110537383
XM_036967443.1 mRNA upstream 117710 7408252 ~ 7436195 (-) False LOC110520792
XM_021588963.2 mRNA upstream 215659 7506201 ~ 7510860 (-) True LOC110508441
TU251896 other downstream 20575 7176392 ~ 7201421 (-) True G220751
TU251306 other downstream 121826 7099338 ~ 7100170 (-) True G220261
TU251284 other downstream 138305 7082745 ~ 7083691 (-) False G220242
TU251262 other downstream 160165 7019976 ~ 7061831 (-) False G220229
TU251959 other upstream 138128 7428670 ~ 7436171 (-) False LOC110520792
TU251958 other upstream 138292 7428834 ~ 7436171 (-) True LOC110520792
TU252079 other upstream 226658 7517200 ~ 7524492 (-) False LOC110508454
TU252080 other upstream 226658 7517200 ~ 7524492 (-) True LOC110508454
TU252088 other upstream 237484 7528026 ~ 7530317 (-) True LOC110508472

Expression Profile