RNA id: XM_036967387.1


Basic Information

Item Value
RNA id XM_036967387.1
length 5837
RNA type mRNA
GC content 0.51
exon number 29
gene id LOC110520786
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7221996 ~ 7320978 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGATGAGGGGACAGGTCGGACACTGATAAAGACGGTAACTAGCTAGtaaaggagtgcacggggaaagatGATGACGGACATTAGGCCACAGACAGGTGAAGATGACAGCTGTTATTGACAGAATGACACTTTTTATTTTTGCCTTTGACAGTGTGTGAATACCACTTTGACTACAAGATTCTGCAGAAACCAGTAGATCTGCGTGGGCATCTGATCTGCACAGGGCAACATTCACATAATCTGTAGGCTGGCCAGGTGGGAGCTACAGGTTTAGGCACAGATGCATATAGATGGGACAGGTCCAGGCTAACAAACAGGTATTGGGGATGAAGGAGAGCGGGCAGGTACCAGGTACCTGACGAACCACTTGGCTCGGAAGTGTTTGGGAGAGCTGATGGGAACATTTGTTCTGCTGaCAGTCCCATGGGCCATAGTGGAGGGTCAACAACAGAGTGGAGATGTTCAAAGAGAGGCCTCCTCCAGaggaggagaggagggtccgGGCCAATGACAGAGAATACAACGAGAAGTTTCAGTATGCGagTAACTGTATTGTGACGTCTAAGTACAACGTCATCACCTTTCTGCCCGTCAACCTGTTTGAACAGTTCCAGGAAGTGGCCAACACCTACTTCCTCTTTCTGCTCATACTGCAGttgatTCCTCAGATCTCGTCTCTCTCCTGGTTCACCACCATAGTGCCTTTAGTCCTGGTGCTCAGCATCACTGCAGTAAAGGATGCCACCGATGACTACTTCCGTCACAAGAGTGACAACCAGGTGAACAACCGGCAGTCTCAGGTCGTCATCCAGGGCTCTCTTCAGAAGGAGAAGTGGATGAATGTAAGAGTGGGTGATATCATTAAACTGGAGAATAACCAGTTTGTGGCAGCTGACCTTCTCTTACTGTCCAGTAGTGAGCCTCATAGCCTCTGTTACATCGAGACCGCAGAGCTAGATGGGGAGACCAATATGAAGGTGCGTCAGTCTCTGTCTGTGACTGCAGAGCTGGGAGACCCCAACAGCCTGGCCTCTTTTGATGGTGAGGTGGTCTGTGAGCCTCCCAACAACAAGCTGGACAGGTTCTGTGGTCTTCTGTGCTGGAGAGATTGTAAATACCCCCTGAGCAACCACAACATGTTACTACGAGGCTGTGTTCTCCGCAACACAGAGACCTGCTACGGACTGGTCATCTTTGCAGGCCCAGACACCAAGCTGATGCAGAATAGTGGTCGCACCAAGTTCAAACGCACAAGCATCGACCGCCTCATGAACACACTGGTGCTCTGGATCTTTGGCTTCATGGTGTGTATGGGTGTGATCCTGGCTGTGGGGAAcgctgtgtgggagagagaggtgggttctCTGTTCCAGAGTTACCTGGCCTGGGACCTGCCTGTAGACAACTTCCTGTTCTCTGCTTTCCTCTCCTTCTGGTCCTACGTCATCATTCTCAACACCGTGGTGCCCATCTCACTCTACGTCAGTGTGGAGGTGATTAGGCTGGGTCATAGTTACTTTATAAACTGGGACAGGAAGATGTTCTGTCCACAGTGTAACACAGCAGCTGAAGCCAGGACCACCACTCTCAACGAGGAACTGGGACAGGTGGAGTACATCTTCAGTGACAAGACAGGAACTCTCACTCAGAACATCATGAGCTTCAGCAAGTGCTCTATCAATGGACATGCCTATGGTGAGGTGATCGACCCGTTGGGAGCACAGCCAAAGAGGCTAGACTTCTCTTCCTTCAACCCCCTGGCGGACCCTGACTTCTGTTACTATGACAACGGTCTGCTGAAGTCGGTGAAGCTGGGAGACCTTCACAGCCACGAGTTCTTCCGGCTGCTTTCCCTCTGTCACACCGTCATGagtgaggagaagaaggaggGAGAGTTGATGTATAAGGCCCAGTCTCCAGATGAGGGTGCATTGGTGACAGCAGCCAGGAACTTTGGTTTTGTGTTCCGGTCTAGAACCCCTGGTACTGTCACTGTGACAGAGCTGGGCCGACCCGTCACATACACACTGCTGGCCATCCTCGACTTCAACAACATCCGCAAGAGGATGTCCGTTATAGtGCGTAACCCCGAGGGGAGGATCCGTCTATACTGTAAAGGAGCTGATACTCTGTTGTTTGAGAGGCTCCACTCCTCCAACAATCACCTGATGAACATCACAACAGATCACCTTAATGAGTATGCTGGGGACGGTCTGCGGACCCTGGCCCTGGCCTACAGAGACCTGTCAGAGGAGCAGTGGGAGGAGTGGTCAGAGAGACACCGCCAAGCAGACAGAGCTACAGACTGTAGAGAGGACAGACTGGCTGACATATATGAATACATAGAACAGGACATGATGctCCTGGGAGCCACAGCCATAGAGGATAAGCTACAGGAGGGAGTTCCTGAGACCATCGCTATTCTCTCTCTTGCTAACATCAAGATCTGGGTCCTCACTGGAGACAAACAggAGACAGCAGTTAATATAGGTTACTCCTGTAAGATGCTGACTGGTGATATGACTGAGGTGTTCATCATCAGTGGAAACACAGTGCTGAGTGTTAGAGAGGAACTCAGgagagcgagggagaggatgATAGAGTTTGCCCGtacgagagagggaggaaaggaggaggggatggagggatggggcgAGGCCTGTTCTCTGGGGAATGGGTTTgggggagacgggggaggagatgggagagagtggCCCTCCGTGGGGGACAAACAGCAGCAGTGTCCCCCTCCCCCTGGCCCTCCCGCCCCTCGACCCCCCTCCTCAACCACGCTAGACTCCATATCTGGAGAGTTCGCCCTCGTCATCAACGGACATAGCCTGgcCCATGCGTTGGAGGCTGATATGGAGGGGGAGTTTGTGTCAACAGCGTGTGTCTGTAGAGCAGTGATCTGCTGCAGGGTGACTCCTCTACAGAAAGCCCTGGTGGTGGAGCTCATCAAGAAACACAAGAAAGCTGTCACCCTGGCCATAGGAGACGGGGCTAATGATGTTAGCATGATCAAgaCGGCTCATATAGGAGTGGGCATCAGTGGTCAGGAGGGCATCCAGGCAGTGCTGGCGTCTGACTACTCCTTCTCCCAGTTCCGCTTCCTCCAGCGCCTGCTGCTGGTCCACGGACGCTGGTCCTACCTCCGCATGTGTCGCTTCCTCTGCTACTTCTTCTACAAGAACTTTGCCTTCACCATGGTGCACTTCTGGTTTGGCTTCTTCTGTGGCTTCTCTGCCCAGacagtaTATGATCAGTACTTCATCACTCTCTATAACATcgtctacacctctctccccgtGCTGGCCATGGGAATATTTGACCAGGACGTCCCAGAGCAGCGTAGTCTGGAGTATCCTAAGCTGTATGAGCCAGGTCAGCTTAACCTGCTGTTCAACAAGAGAGAGTTCTTCATCTGTATAACCCAGGGTATCTACACTAGTGTTGTGTTGTTCTTCGTACCCTATGCCATCCTGTCCCACGGAACCCAGGGCACCGGGGAACCCCTCGCTGACTACCAGACCTTTGCTGTTACCACGGCCACCGCCCTGGTGATCGTGGTCAGTGTGCAGattgctctGGACACAGGCTACTGGACAGCCATCAACCATTTCTTTGTGTGGGGCTCTGTGGGCTCCTTCTTCACCATCATGTTGGCTATGCACAGCCAGACTCTATTCAGCATCTTTCCCAACCAGTTCCACTTCGTTGGCAGTGCCCAGAGCACACTGGTCCAGCCGCTGGTGTGGCTGACCATCGTCTTGGCCACAGTGATCTGCATCGTTCCAGTTCTGGCTTTCCGATTCCTCAAACTGGACCTGAAACCACAGCTCTCTGATACGgtGCGTTACACCCAGCTGGTGCGTCAGAAGACGAGGAAGCCAGCGGGTCGATGCATGGGAGGAGTCAGGGGCGGGGGCGTGCCTGAGGGTCGTCTGGGGGCAAGGGGGGGGTTCAGGAGGTCAGGATATGCCTTTGCCCACCAGGAGGGCTTTGGGGAGCTCATCACCTCTGGGAAGAACATGAGACTGTCCTCCCTGGCCCTGGCCAACTTTGCCTCCAGACACAGCTCCAGCTGGATAGACACCCTGCGCAAAAAGAAACACTCAAATACACATCCCCCGCAGAGCGCCTCGGGAGAGAGCAGCCCGGCACCTAGCTATGTGTCGGGATCGGCTCCCCCCCTGTCCAATTCATCCTCTCTCCTGGGGGGGTCGCAGGATACTCCCCTGGAGGAGGGAACACACACGCTGCCTGTCATACTCCCACAGGTGGCTTCTGGCCCTCCCACAAACACACCAGCGTTAGCTCCAGCCCAGGTCCCCTCTGCTGACGCTCTCACTCCCACCTCTGTGAGGAGTCCTGGGGGAGACTCGGTTGGTGGCTGGAACCTTAGTCTGGGCGCTGTACAGGATGCTCTATTTGGTTGGAGGGGCGGCGCCTCTCGCACCAGCGGAACCAGCAGCCCGGGACCTCCCCCTGTTCCCAAGGAAACCAACCACACCGTgtgagacggacagacagatggacagatgaTTTAAAGAAGAAGGACAGGCTGTCATATCCCACTGGATTCTCTTGGAATACGTGAAGAAATACTGCATTTGGAAGTTTGGAATACTGAAGGAGGAATGTTTGGAATGGCACTTAGGAAGAGATCCAAAGTGGCAGCCAATGTAGGCGGAAGGCATACACACCCATCAACACCCACTGGCATTTGTATGACACTGTCGTTGCAATAGTGTTGATACATATATGTATCCGTCTGAAagactactgtgattattattatttgaccatgctgttctgttataatctccacccggcacagccagaagaggactggccacccctcatagcctggttcctctctaggtttcttcctaggttttggcctttctagggagtttttcctagccactgtgcttctacacctgcattgcttgctgtttggggttttaggctgggtttctgtacagcactttgagatatcagctgatgtaagaagggctatataaatacatttttatttgaaatCAATTTTATTTGAAAGATGGTGTGTGGTAGTTGTGATAGACATGCTCAGACTATCCACAACCCACTTATCTGTCTTCTTCAACCAATGAGGCAGGCTGAAAGAAGCACTTCTTCATGCAAATGATGTAACCATCTGCTGAAGAGCTTGGTACCACAGGGTTCCGGACAGAAACCCCCCTCCAACAGCACCGTTGTGGTTCAGACATGACTATACTATTTATACAATGGATCATATGTCATAACATCATATCAGATTGGTTCAAAACAAAGTATTGAATTGAGTCTTTATGACAGAAGAGAGGTTCATTTGATGGTCAGAAAGGTGGTGAATTGAGTCTTTATGACAGAAGAGAGGTTCATTTGATGGTCAGAAAGGTGGTGAATTGAGTCTTTATGACAGAAGAGAGGTTCATTTGATGGTCAGAAAGGTGGTGAATTGAGTCTTTATGACAGAAGAGAGGTTCATTTGATCATCAGAAAGGTGGTGAATTGAGTCTTTATGACAGAAGAGAGGTTCATTTGATCATCAGAAAGGTGGTGAATTGAGTCTTTATGGCAGAAGAGAGGTTTATTTGATCATCAGAAAGGTGGTGAATTGAGTCTTTATGACAGAAGAGAGGTTCATTTGATGGTCAGAAAGGTGGTGAATTGAGTCTTTATGACAGAAGAGAGGTTCATTTGATCATCAGAAAGGTGGTGAATTGAGTCTTTATGACAGAAGAGAGGTTCATTTGATCATCAGAAAGGTGGTGAATTGAGTCTTTATGACAGAAGAGAGGTTCATTTGAT

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0006812 cation transport biological_process
GO:0045332 phospholipid translocation biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K01530 E7.6.2.1; phospholipid-translocating ATPase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251877 lncRNA downstream 2594 7158585 ~ 7219402 (-) True il6r
TU251860 lncRNA downstream 66773 7154745 ~ 7155223 (-) True G220722
TU251327 lncRNA downstream 101493 7120287 ~ 7120503 (-) True G220281
TU251324 lncRNA downstream 103276 7118482 ~ 7118720 (-) True G220278
TU251318 lncRNA downstream 106104 7115603 ~ 7115892 (-) True G220272
TU251980 lncRNA upstream 18229 7339207 ~ 7339861 (-) True G220819
TU251953 lncRNA upstream 85459 7406437 ~ 7408110 (-) False G220797
TU251954 lncRNA upstream 85459 7406437 ~ 7408110 (-) True G220797
TU252051 lncRNA upstream 157168 7478146 ~ 7479468 (-) True G220879
TU252063 lncRNA upstream 173645 7494623 ~ 7494865 (-) True G220889
XM_036963735.1 mRNA downstream 1916 7209694 ~ 7220080 (-) False il6r
XM_036963718.1 mRNA downstream 1918 7207921 ~ 7220078 (-) False il6r
XM_036963724.1 mRNA downstream 1918 7207921 ~ 7220078 (-) False il6r
XM_036963716.1 mRNA downstream 1921 7207921 ~ 7220075 (-) False il6r
NM_001281406.1 mRNA downstream 3162 7207921 ~ 7218834 (-) False il6r
XM_036975430.1 mRNA upstream 2058 7323036 ~ 7343283 (-) True LOC110536068
XR_005040374.1 mRNA upstream 44439 7365417 ~ 7394498 (-) False LOC110537383
XM_036967433.1 mRNA upstream 44439 7365417 ~ 7394499 (-) True LOC110537383
XM_036967443.1 mRNA upstream 87274 7408252 ~ 7436195 (-) False LOC110520792
XM_021588963.2 mRNA upstream 185223 7506201 ~ 7510860 (-) True LOC110508441
TU251896 other downstream 20575 7176392 ~ 7201421 (-) True G220751
TU251306 other downstream 121826 7099338 ~ 7100170 (-) True G220261
TU251284 other downstream 138305 7082745 ~ 7083691 (-) False G220242
TU251262 other downstream 160165 7019976 ~ 7061831 (-) False G220229
TU251959 other upstream 107692 7428670 ~ 7436171 (-) False LOC110520792
TU251958 other upstream 107856 7428834 ~ 7436171 (-) True LOC110520792
TU252079 other upstream 196222 7517200 ~ 7524492 (-) False LOC110508454
TU252080 other upstream 196222 7517200 ~ 7524492 (-) True LOC110508454
TU252088 other upstream 207048 7528026 ~ 7530317 (-) True LOC110508472

Expression Profile