RNA id: XM_036975430.1


Basic Information

Item Value
RNA id XM_036975430.1
length 5325
RNA type mRNA
GC content 0.53
exon number 8
gene id LOC110536068
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7323036 ~ 7343283 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAcggtgactgagtgagtgaatgtCTGCTCGCCTGCCTGcctctgtttgtgtctgtttaTATTCCCATGCAGTATAAACCGGTGTGGTTGTTCAGCTGCCCTCTCAGACCACATTCTGCTACTGAGAATAAACCATGCTGCCTTCACAGCCTTGGCAGTCTGAAACATCTAGAGGAAACCGAGGAATACTGCTAACGAGACAGTGGTCATGAAAGAGGAATACTGCTAACGAGACAGTGGTCATGAAGGAGGAATACTGCTAACGAGACAGTGGTCATGAAGGAGGAATACTGCTAACGAGACAGTGGTCATGAAGGAGGAATACTGCTGACGAGACAGTGGTCATGAAGGAGGAATACTGCTAACGAGACAGTGGTCATGAAGGAGGAATACTGCTAACGAGACAGTGGTCATGAAGGAGGAATACTGCTAACGAGACAGTGGTCATGAAGGAGGAATACTGCTAATGAGACAGTGTTCATGAAGGAGGAATACTGCTAACGAGACAGTGGTCATGAAGGAGGAATACTGCTAACGAGACAGTGGTCATGAAGGAGGAATACTGCTAATGAGACAGTGGTCATGAAGGAGGAATACTGCTAACGAGACAGTGGTCATGAAGGAGGAATACTGCTAACGAGACAGTGGTCATGAAGGAGGAATACTGCTAACGAGACAGTGGTCATGAAGGAGGAATACTGCTGACGAGACAGTGGTCATGAAGGAGGAATACTGCTAATGAGACAGTGGTCATGAAGGAGGAATACTGCTGACGAGACAGTGGTCATAAAAGAAAGGAGACAAGGAAAAGATGCTGTTAGGGACACAGGACACTGTATATGTAAATGAATGTGtgatactgatgtctctaccGGTGGTGTGACGCTTCTTTGTTCCCTCAGGAAGGAAGTCTCTCAGCTCACGCTTCAGACGACAGAGCGGAACAGCTACAAGTCTGAGTGTTCTGAGGCTTGTGTGTGACCGCTCACCCAGGAAAACTTCACTGCTGAGGACCTCTGTTTGACTACTGGAGCCGACACCAcagagaggaatggacagagagggagggaagtagaacTAACAATCATCTCTGAGTGTGTGGGAGACAGAAATGCAGAGAATCTTCATGGATGGAATCTCAAACCTGTGGATATACAAGTGAGTGTCTGTTGATATCTGGAGCCCCAAACATGAGAAGATTGCAGTTCAACCACTCTGACGTTTCTGCTGGGGCAGACAAACACCTTTCCTTCCAGACCTGTGCTGCTACCAGGCCTGTGCTGCTGTCGAAGACTTCTGTGATGATTTTGACCTGTGGTTAAACTCTGCAAAAAGGATTACTGGGATTCTTAAACTGTCACCttttactacatactacatttgGAATAATTCAACTCGCACTGGACCCATTCCCCAGTGAGGGGAAATACACAACAGGCTCCACAATGGCCACCGGACAGTTGAGACAGAATGGTGGTGTGAGGGACGTGATCCCAGAGGATGGCAGTGACAGGGGAGGAAACTGTGGCATTGCAGGGAAGTTGGCTGGAGACAGGGGCAGGACAGAGTGGAGAAGGCTAAACCTGCCCAAAAGGAGTAAGAGTTTAGACTGGAGTGGAAGGGGGGCTAGCCCTGGCGAGGGGCTCAGGACTGGGCTGCTGAGGTTTTCTGGGAACCTAGGGGGGTCCACACTTAAACGAGCAGAGAGTTTGGAGAGTAGGAGGGCAGGAGAGAGCAATGTGTTGTCCAGGGTGAAGGCCTTTAACTCAGTTGGACCAGGGGAAGTGAGGAGCCCCGTTCGGGGGTCAGGGTGTTCCCTTGGTGAAGGGGTGTCCCCTGTGGGTCTAGCGTATGTGGCTATATCTCTGGAGAGGGCCAGTGGGGGCCAGTCCCTCCCCACCAGGCTGAGTTCTAGTCCTGGTCCTGGGTCTGGAACCAGAAAACCAGCCGGTGGATCTCTTGGATCCTCCAGGGGTCAGAGTATCTGGGACCGGATACAGAAGCTCTATGGGACTACTGGAACTGATAAAGCTACTAACAGAGATGTGAAGGACTCAACCAGAACCAAGCGTCTCTCAGCACCGGTAGGAGACTGGTCTCTATtggagagggatgggggggatACAGCAGCCAATCGCAGGATGTCCACCACAGACTCTGTCtttgtctcccccctctcctcccccgttTCCTCCCCCCTCAGTGGATTATCCAGGGGGGAGAGGAACGGcctgctctcacacacacccctagtagaacagaacaccacacacacacccctggtagaacagaacaccacacacactacacacacaccacagagacatCAGCATAGTGCAGTCAAGGTGTCTGGTTTGAGCCCCTCACTGTCTCCAGTGTCAGGGTGTACCACACCCACACTCTCATACaaaccctcacacacacccttaGTGGAGGGGTCATCAGTGTGCATTAGGGACCCCTCACTATCCCCTCCATTAGAAGAcaaacaggagagagggaaaaaggagGTGACAAACACTGTGGGCAAAAAGAGTGGAAGTAGTGAAGACAGCGAAAAGGAGAGAGTAAGGGTGGGGAGCATGGCTCAGGAAAAAGAGAAATGGACTGATGTCGAAGGAAAAGGACACAAGAAAAAGGAGGTGGAGAAGCGAGGGAGAGATAACGCTGAAGTCTTTCTCCCCCAGCACAGACTATCAGTGACACCCACCAGGGACTCTCAGCCTATCACAACGTCCGGAGTAGGGATCACCACAGGGTCAAACCCCCTCCTGACCAATCAGCTTAATGGGAAAATTGACACCTATGACAGGAGCAAGACCCCTGGTAGAGGCGTGGCCAGGGAACAGAGCCTGTCAGAAGATGTGTTTGAAGCCAACACCCCACAGAGGATAACATTACAGAACACAGAAAATACCAAGTTACCTGGGAAACTGGTAGTGCCCTCTGCAGCCAGTGTGAGGAACAAGATCCACCAATTTGAAGCTCTGACACAGACATCTCAGGTCCCAGTGCCCAACTACCTGAAGCCCAGACGGGCTTTCTCTGTCCCGGAACAGCTCAGTGAGTCTGGAGAGGGGGTCAGGAAGAGTGGGTTGGATAGACAGGTACGCGGGGTGGGGGGagtatgggagagagggagaggaggaagagagggagggattgtaATTATGGATGGGGGGAGAGgacgaggagaaggagaaggggtaAGGAAGAGTGTGCCAGATAAAGCActtggtggagggagaggaagtgaggtagtgagagaagagaggaaggctcATAGAGGGTGGGCGCTGAGGTCTATGTCAGTGGATGAGGTGAGGctggggaGGGAAGTGGGGGAGATAGGCAGAGTGGGGGAGACGGGAGGAGTGGGGGAGACAGGGGAAGTTGGGGAGACGGGAGGAGTGGGGGAGACAGGGGAAGTGGGGGAGAATGCTGTTGTCTCTGGTACGTTTTCCAACCTCGGGGGTAAACTAGACATCCCTCTGAATGGCAAAACCACCAGAGACACTCTGAAAGACTTTTCCATTGATGAGCCAGACCTCCCCAATCACACAGTCACACCCCAGGACTGGAGTAGGAGAGGCACCAACACAAAGACTACTACAGTCACTGCCAAGGATACTTCATCCTCCCAGCTGTCTAACTCTGTGAACAACTCCGATGACGTTCTAGGTGGCCCTGACCAGTCTAGGAGGCCTCACAATAGAGACTCACCTAACCTGCCATCTCCAGTGAGCGATGACGACAAGACACCAACCAACACCCCCCAGAACTCCCCCTTCCACCCCCAGAACACACCTCCCACCTCCCCACACCTCCCCACTACTTCCCTGCAGCCTAAACAccaacagggtgtagattcaggTCTAGCTGACCTAAAGAACCCTCCAgtctccacacacacagcccagggtAGGGTCACTACTGACCCTGCTATCCCAGTCTCACACTCTGGCCTGGGGAGGGATTCCCTGTCCcttcccctcacctcctcctcccccaacaGCCTACCGCTCCTCCCCACTCTGGCTCGATGGAACTCAGAGGAAGGGGGATGGAGTGATGAGGATATTGATGATGAAGGTACAGAGAAGGACTCAGACTCCACCTACGACTCAGACTCTGCTGAATCGTCGGTGACCGTCACCAGCGCCATGAGCCAATCACATCGCAGGAGCTTCTCTCTCAGtctggcAGAGCTGTGTAACTTTGGAGAGGTGGACTATGATCCCCAGTCTTCCTCTGACAGTGAGGAGTGGCCGTCCAGCCGGTCAGCCAGCCGGTCAGCCAGCCGGTCAGCCAGCCTGTCGTCTGACGTGTCGGCATTgtcctgtgtgtctgtcctggGCAGTGATGAGCTGAACCGCCTGCTGGACGACGTAAAGAGCCTGGGGGACACAACGCTGCAGAACTATGAGGATGTCCAGGTGGTGGTTCTCCATAAGGATGTTGGTGTGGGACTGGGCTTCACCATGGCAGGAGGAGTGGACCAGAACAAACCTGTCATTGTCCATAAGGTGTTCCCGGCAGGGGTGGCTGCTAAGGAGGGATCCATCCAGGAGGGAGACAAGGTCCTGTCAATCAACGGCACAGCGCTGTGTGGCTCCTCCCACTGGGAGGTGCTGAGGACACTAAGGAGGGCGCGGACTCAGGGGATGGGCGTGGTTGTCTTGAGGAGAGGGGGGGTAACAGACCCCCGTAAGGGAGGAACAGTGACTGATAGTCCAGGAGGGACACAGACAGAGCCTGCTAACACTGgtcagagggtgtgtgtgacgCTGGAGAAGCGCAGCAGAGACCTGGGCTTCAgtctggagggaggagtgggttCCAGCCTGGGAGACAAACCCCTCACCGTACAGAAACTCTTCCTTGGTGGTCCAGTGAACCAGGTGTCTCCAGGGGACGAGGTGATGGAGATCGAGGGTGTGAGCTTGGTGGGCCTGAGGAGGCTGGAGGCCTGGACCTTGATCAGAACACTGCCCCCTGGGCCTGTGGATGTGGTACTACACCGTCCTCACAAACCACAGTGACAGGAATGAACATTGATATGCACCCTCGATATGCTTATAACAAGGCACTGAAGAGACCAGTAAAGACTGAGGAGAGGGCCTGTCTGTATATAGGGTCAACCCAGGGTatgaagagggagacagagatcaATACAGAGGTCATTTATTTAACGTTGTAGAAATATGCTGTATGTTTCTTTAATACCTAGTCGGCCCAGTTTTATATGATGAAATGTCAGGAGTTTGTATATGGCTGTTGTAATATATATTGTGACTGGAAAGTTAATAAATCCTACAATAACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251870 lncRNA downstream 3549 7314310 ~ 7319487 (-) True G220729
TU251951 lncRNA downstream 22720 7300083 ~ 7300316 (-) True G220796
TU251949 lncRNA downstream 24634 7298165 ~ 7298402 (-) True G220794
TU251947 lncRNA downstream 30987 7291837 ~ 7292049 (-) True G220792
TU251946 lncRNA downstream 31485 7291297 ~ 7291551 (-) True G220791
TU251953 lncRNA upstream 63154 7406437 ~ 7408110 (-) False G220797
TU251954 lncRNA upstream 63154 7406437 ~ 7408110 (-) True G220797
TU252051 lncRNA upstream 134863 7478146 ~ 7479468 (-) True G220879
TU252063 lncRNA upstream 151340 7494623 ~ 7494865 (-) True G220889
TU252068 lncRNA upstream 155230 7498513 ~ 7502503 (-) False G220892
XM_036967387.1 mRNA downstream 2058 7221996 ~ 7320978 (-) True LOC110520786
XM_036967380.1 mRNA downstream 11933 7221996 ~ 7311103 (-) False LOC110520786
XM_036967403.1 mRNA downstream 11933 7221996 ~ 7311103 (-) False LOC110520786
XM_036967377.1 mRNA downstream 32494 7221996 ~ 7290542 (-) False LOC110520786
XM_036967394.1 mRNA downstream 32494 7221996 ~ 7290542 (-) False LOC110520786
XR_005040374.1 mRNA upstream 22134 7365417 ~ 7394498 (-) False LOC110537383
XM_036967433.1 mRNA upstream 22134 7365417 ~ 7394499 (-) True LOC110537383
XM_036967443.1 mRNA upstream 64969 7408252 ~ 7436195 (-) False LOC110520792
XM_021588963.2 mRNA upstream 162918 7506201 ~ 7510860 (-) True LOC110508441
XM_021588983.2 mRNA upstream 173912 7517195 ~ 7523801 (-) False LOC110508454
TU251896 other downstream 121615 7176392 ~ 7201421 (-) True G220751
TU251306 other downstream 222866 7099338 ~ 7100170 (-) True G220261
TU251284 other downstream 239345 7082745 ~ 7083691 (-) False G220242
TU251262 other downstream 261205 7019976 ~ 7061831 (-) False G220229
TU251959 other upstream 85387 7428670 ~ 7436171 (-) False LOC110520792
TU251958 other upstream 85551 7428834 ~ 7436171 (-) True LOC110520792
TU252079 other upstream 173917 7517200 ~ 7524492 (-) False LOC110508454
TU252080 other upstream 173917 7517200 ~ 7524492 (-) True LOC110508454
TU252088 other upstream 184743 7528026 ~ 7530317 (-) True LOC110508472

Expression Profile