RNA id: XM_021621564.2


Basic Information

Item Value
RNA id XM_021621564.2
length 2566
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC110536044
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7348131 ~ 7357408 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGGCCCGGGGGTTTTGCTTTGAGAGATTTCCCACCCAGCCAAGCAATAATcaataggggaaacactgttgaGTCAGAGAAATCAGATGGGTGCTACACATTGGTAATGGATGAGGAGAGTTTCTGTTTCCACCCATGTACACGTGACAATCCCGGATGTCAACAAACGATATCAACAACAGGGAAGTGTCAACGCATCGTTGTTACAGATTTTCCAATGGATTAACCGACATTTGATAATTAATTAATGTTACAGTCACTCGTGTACATTCTGAAAGGAACTATGAGTGAGTTCTGTTGATTCTACGCTAGTTTAGCATTTGACGAAGACTTTCAACATGAGGTCCGATTCTCCTCTCTCCAGCGTCAACGTAGTGCTTGTTATGGCCTACGGAAGTCTGGTGTTTGTGCTGCTGTTCATCTTTGTGAAGAGGCAGATCATGCGCTTCGCCATGAAGTCTCGTAGAGGACCACATGTACCCTTGGGCCACAACGCTCCaaagGAGCTGAGACAGGAGATAGACTGTGGTCTGTCCAAGGTTCAGGAGATCCGCTTTGAGCCACGCCTGCTGTCTGAACAGGACGACAGACTACAGAGTGGCGgTTGCTATGACTACCTATACAGAATGAGGGCACTAGATGCCATAAGAGACTCTGATATTCCGTTCAGTGAGTTGGGAGGGACTCCCACAGCTGTGACAGGGAGGAGATTCCGCGCCTGGCTTCTCGATCTGAGGAGTTCCCATTCCCTGTTCTGCAGCAGCCGTAGTTCCCTCATAGACACACTGCTGGAGGGCTACCACAACGCTCGCCACGGCACCGGGgTGTTTGGAGAAGCAGAGTTTGTCAAATACAAGGAAGCCCTGAACGAACTGGCCTCTGTTTATTATTCTCTCCCCAGTGTGAAGAGCCACTCCAGCTCCACCAGTCTGGACCAGCATCACCAGTTAGCAGCTAAAGACCTGACTAGTACCCCAGAgcccacccccccctctcccccctcccaggTCACATACCTGCCGTCAGCTGGGCAACGCACCAAACGACCAAAACACTTCCTGGAACTCAAGAACTTTAAAGACAAGTACAACACCTTGGAAAGCACATTCTGAGAACTACAATCTCCTATGGCATAACACGAGAAACTACAATTCCCTACAGCATACCTTGAGAAACTTGCTGCCTCTGACAACTTACAACTCCCTAGAAAACAACCTGAAAACTACAACAACTCCTCTGCTACCACTTTAAATCTGTTTTGTTGCGAGTACTGGACACTTTTCCTTCTCTATTTCCAAATTAGATAGCCTAGTGAAAAGAAaataatctgttgttctgcccctgaacaggcagttaacccactgttcctaggccgtcattgtaaataagaatttgttcttaactgacttgcctagttaaataaaggttcaataaaacggAAATGAAGGTAGTGATAAGTAGAGCTCCTGGAGGTGACAGATACTGGGGTTTGTGGTAAAAGAAGAGGTTGGTGAGTTAGTTTAGTGAGAGACTTGTTAGTgccagcagagagagaagagacttgGTAGGGTTGGTACTTGGTACAGTTGGGAAGACTGGAGCACAGCAGGATTAACAGTAGCATAGCACAGCAGTATAGGAATGACAGTAACATTACGCTGCCTTGCTAGTCCTGAGGAAAAACACTGCCTACTATCTATCATGCATCTCACATAATAAATAGTGCACTAGATTTAAGCTTATTTGACGTTAAACATCGTTGTGAACTTTTGCACAGACTTTGCAGGTAGATCATCATGTAGGGCTATGCAAAAGAGATGAGACCAGACAAGCTACATGCAGTTTCTATGCAGAATGCATTaatgcagtgtttcccaaacttggtcctggggacccGAAGTGGTGCACGTTTTgggttttgccctagcactacacaactgactcaaataatcaactaatcatcaagctttgattatttgaatgagCTGTGTCGTCCTAGAGCAGAACCTGAAATGTACATctcttggggtccccaggactgagtttgggaaacgctgtatTAATGCACAGTGTTAGAGTAAGACTTGTTTATAATGTGTTCAGTGCTAACTAAGCTATTGATGGACTAACGTTATAGCAGACCAGCGTTCCTCACAATGGCCCTGGAGAGCTAAAGTACAggctgtgcaggcttttgttcccgCCTAGCACTAACACACCTCCAATCAAGCTGATTAGTAGAATCCGGTTAGTCACTGTTGAGCTGGAACAGTACAGAAGAACTATGGATTATTCCAGTATTACTGCTAGACATTTCCAGTATTATTGTCCTGTTGCCAGCACTTGTTTAGGGCAGAGCCATGTATTTACATATATATTGCTCTGGTTTAGGGCTAGTGTTACAAGGAAATGAACATGTTACCACGTCTGATGGTTGTCTATTTGCTGCATAAAAATGATTATACTTTTTAgagtctacaatgtttttttgttgttgctgaaatCTGTTTTTGTATTCCATTTTTAAAGATAATTATTTAGAATAAAGCATTCATGTTAAGTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251482 lncRNA upstream 36089 7311639 ~ 7312042 (+) True G220407
TU251481 lncRNA upstream 36991 7310575 ~ 7311140 (+) True G220406
TU251478 lncRNA upstream 41836 7305933 ~ 7306295 (+) True G220403
TU251465 lncRNA upstream 47234 7300676 ~ 7300897 (+) True G220395
TU251437 lncRNA upstream 83471 7259535 ~ 7264660 (+) False G220368
TU251515 lncRNA downstream 2260 7359668 ~ 7365285 (+) False G220435
TU251516 lncRNA downstream 2260 7359668 ~ 7364446 (+) False G220435
TU251523 lncRNA downstream 8055 7365463 ~ 7366848 (+) True G220437
TU251532 lncRNA downstream 20850 7378258 ~ 7378802 (+) True G220445
TU251470 lncRNA downstream 49032 7406440 ~ 7419394 (+) True G220397
XM_036967358.1 mRNA upstream 177688 7161950 ~ 7170443 (+) False LOC110508415
XR_005040361.1 mRNA upstream 234350 7109982 ~ 7113781 (+) False LOC110508400
XR_005040362.1 mRNA upstream 234350 7110344 ~ 7113781 (+) False LOC110508400
XR_005040360.1 mRNA upstream 234350 7110348 ~ 7113781 (+) False LOC110508400
XM_036967328.1 mRNA upstream 249226 7084931 ~ 7098905 (+) False LOC110508380
XM_036967452.1 mRNA downstream 79603 7437011 ~ 7447882 (+) False LOC118945274
XM_036967459.1 mRNA downstream 103032 7460440 ~ 7500537 (+) True LOC110508431
XM_021589071.2 mRNA downstream 260960 7618368 ~ 7627967 (+) True LOC110508507
XM_036967633.1 mRNA downstream 583894 7941302 ~ 8086452 (+) True LOC110513974
XM_036967642.1 mRNA downstream 790999 8148407 ~ 8159396 (+) True efna1b
TU251106 other upstream 361609 6979131 ~ 6986522 (+) False LOC110508323
TU251108 other upstream 361609 6979492 ~ 6986522 (+) False LOC110508323
TU251111 other upstream 361609 6979559 ~ 6986522 (+) False LOC110508323
TU251107 other upstream 361609 6981569 ~ 6986522 (+) False LOC110508323
TU251120 other upstream 403152 6938600 ~ 6944979 (+) True LOC110520781
TU251513 other downstream 2260 7359668 ~ 7364446 (+) False G220435
TU251514 other downstream 5890 7363298 ~ 7364446 (+) False G220435
TU251520 other downstream 5890 7363298 ~ 7365285 (+) False G220435
TU251521 other downstream 5890 7363298 ~ 7365285 (+) True G220435
TU251531 other downstream 20850 7378258 ~ 7381563 (+) False G220445

Expression Profile