RNA id: TU251467


Basic Information

Item Value
RNA id TU251467
length 1987
lncRNA type sense_over
GC content 0.41
exon number 2
gene id LOC110536044
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7348131 ~ 7357408 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctgtgattcaatgataaattaacaggcaccgcatcgattatatgcaacgcaggacaagctagataaactaataatatcatcaaccatgtgtagttaactagtgattatgttaagattgttttctataagatacgtttaatgctagctagcaccttacctccttgctgcactcgcataacaggtagtaagcctgccacgcagtctcctcgtggagtgcaatgtaatcagccatgatcggtgtccaaaaataccgattaccgatttgttatgaaaacttgaaatcggccccaattaatcggccattccaattaatctgtcgacctctagtctaTAGTGTGtgactcctgtctgtctctctgtgtctgaaggTGTTTGGAGAAGCAGAGTTTGTCAAATACAAGGAAGCCCTGAACGAACTGGCCTCTGTTGTGAAGAGCCACTCCAGCTCCACCAGTCTGGACCAGCATCACCAGTTAGCAGCTAAAGACCTGACTAGTACCCCAGAgcccacccccccctctcccccctcccaggTCACATACCTGCCGTCAGCTGGGCAACGCACCAAACGACCAAAACACTTCCTGGAACTCAAGAACTTTAAAGACAAGTACAACACCTTGGAAAGCACATTCTGAGAACTACAATCTCCTATGGCATAACACGAGAAACTACAATTCCCTACAGCATACCTTGAGAAACTTGCTGCCTCTGACAACTTACAACTCCCTAGAAAACAACCTGAAAACTACAACAACTCCTCTGCTACCACTTTAAATCTGTTTTGTTGCGAGTACTGGACACTTTTCCTTCTCTATTTCCAAATTAGATAGCCTAGTGAAAAGAAaataatctgttgttctgcccctgaacaggcagttaacccactgttcctaggccgtcattgtaaataagaatttgttcttaactgacttgcctagttaaataaaggttcaataaaacggAAATGAAGGTAGTGATAAGTAGAGCTCCTGGAGGTGACAGATACTGGGGTTTGTGGTAAAAGAAGAGGTTGGTGAGTTAGTTTAGTGAGAGACTTGTTAGTgccagcagagagagaagagacttgGTAGGGTTGGTACTTGGTACAGTTGGGAAGACTGGAGCACAGCAGGATTAACAGTAGCATAGCACAGCAGTATAGGAATGACAGTAACATTACGCTGCCTTGCTAGTCCTGAGGAAAAACACTGCCTACTATCTATCATGCATCTCACATAATAAATAGTGCACTAGATTTAAGCTTATTTGACGTTAAACATCGTTGTGAACTTTTGCACAGACTTTGCAGGTAGATCATCATGTAGGGCTATGCAAAAGAGATGAGACCAGACAAGCTACATGCAGTTTCTATGCAGAATGCATTaatgcagtgtttcccaaacttggtcctggggacccGAAGTGGTGCACGTTTTgggttttgccctagcactacacaactgactcaaataatcaactaatcatcaagctttgattatttgaatgagCTGTGTCGTCCTAGAGCAGAACCTGAAATGTACATctcttggggtccccaggactgagtttgggaaacgctgtatTAATGCACAGTGTTAGAGTAAGACTTGTTTATAATGTGTTCAGTGCTAACTAAGCTATTGATGGACTAACGTTATAGCAGACCAGCGTTCCTCACAATGGCCCTGGAGAGCTAAAGTACAggctgtgcaggcttttgttcccgCCTAGCACTAACACACCTCCAATCAAGCTGATTAGTAGAATCCGGTTAGTCACTGTTGAGCTGGAACAGTACAGAAGAACTATGGATTATTCCAGTATTACTGCTAGACATTTCCAGTATTATTGTCCTGTTGCCAGCACTTGTTTAGGGCAGAGCCATGTATTTACATATATATTGCTCTGGTTTAGGGCTAGTGTTACAAGGAAATGAACATGTTACCACGTCTGATGGTTGTCTATTTGCTGCATAAAAATGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251510 lncRNA upstream 5644 7348838 ~ 7349576 (+) True G220432
TU251482 lncRNA upstream 43178 7311639 ~ 7312042 (+) True G220407
TU251481 lncRNA upstream 44080 7310575 ~ 7311140 (+) True G220406
TU251478 lncRNA upstream 48925 7305933 ~ 7306295 (+) True G220403
TU251465 lncRNA upstream 54323 7300676 ~ 7300897 (+) True G220395
TU251515 lncRNA downstream 2365 7359668 ~ 7365285 (+) False G220435
TU251516 lncRNA downstream 2365 7359668 ~ 7364446 (+) False G220435
TU251523 lncRNA downstream 8160 7365463 ~ 7366848 (+) True G220437
TU251532 lncRNA downstream 20955 7378258 ~ 7378802 (+) True G220445
TU251470 lncRNA downstream 49137 7406440 ~ 7419394 (+) True G220397
XM_036967358.1 mRNA upstream 184777 7161950 ~ 7170443 (+) False LOC110508415
XR_005040361.1 mRNA upstream 241439 7109982 ~ 7113781 (+) False LOC110508400
XR_005040362.1 mRNA upstream 241439 7110344 ~ 7113781 (+) False LOC110508400
XR_005040360.1 mRNA upstream 241439 7110348 ~ 7113781 (+) False LOC110508400
XM_036967325.1 mRNA upstream 256315 7085136 ~ 7098905 (+) True LOC110508380
XM_036967452.1 mRNA downstream 79708 7437011 ~ 7447882 (+) False LOC118945274
XM_036967459.1 mRNA downstream 103137 7460440 ~ 7500537 (+) True LOC110508431
XM_021589071.2 mRNA downstream 261065 7618368 ~ 7627967 (+) True LOC110508507
XM_036967633.1 mRNA downstream 583999 7941302 ~ 8086452 (+) True LOC110513974
XM_036967642.1 mRNA downstream 791104 8148407 ~ 8159396 (+) True efna1b
TU251468 other upstream 1590 7348292 ~ 7353630 (+) False LOC110536044
TU251106 other upstream 368698 6979131 ~ 6986522 (+) False LOC110508323
TU251108 other upstream 368698 6979492 ~ 6986522 (+) False LOC110508323
TU251111 other upstream 368698 6979559 ~ 6986522 (+) False LOC110508323
TU251107 other upstream 368698 6981569 ~ 6986522 (+) False LOC110508323
TU251513 other downstream 2365 7359668 ~ 7364446 (+) False G220435
TU251514 other downstream 5995 7363298 ~ 7364446 (+) False G220435
TU251520 other downstream 5995 7363298 ~ 7365285 (+) False G220435
TU251521 other downstream 5995 7363298 ~ 7365285 (+) True G220435
TU251531 other downstream 20955 7378258 ~ 7381563 (+) False G220445

Expression Profile