RNA id: XR_005040374.1


Basic Information

Item Value
RNA id XR_005040374.1
length 2399
RNA type mRNA
GC content 0.47
exon number 13
gene id LOC110537383
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7365417 ~ 7394499 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCCCTATTTTTTTGTTTCATGGAAGTCAATGAACCAAGAAGAATACCAGACCCAGCTGCTGTCGTATTGGTGTATATGGGAGAGCCACCCCCTTAAGTAGACAGGAACGGATCATTTTTTGTTCGATTGTTCACTCAGGATGTTAACCATCTTCAGCTATCCAACATCTTTGCTGCCTGTGCATTGAGGTCACGCGCATACATTCCTGGGGGAGGGCGGGAGTGGAGGGAACTGCCTGATGAAACGTTATCGACTGGTAGTGAAGAGCAGCGTCGACTATTGTTAAAATCAACCGTGATCTTCCGTCTGTGAGGGCGAGAGTGAGACAAGAGGACGAAAATCCGTGTTCCCTGTTTGTTTAGAGAAAATAATTATATATAAGCAACGTTGGACAACTCTTTCATATTTAAGCTATATAGTTATTTATCTATCTTATCTGTGTGAAGATGAACGGGGTAACGCGGAGTCTGTGTACATTTGAGGACCTCAGAGCTGATGAGAGAACAGCGGATGGGTGCAGGAGACTGAGGCTGACTCTCCACCAGCAGAACCAGGTCGGGAGGATCACAGAACAACCCAGGAGCAAGCCAATCGGACGAGCATTTGCTCTGGTGCAGCCAACCAGTGATAGGCCTGCTCTGAAGCCTGAACCAATCAAACCCTCTGAGGAGAAGACTGAAAAGGTTGAGGTCATCAAGGTGTATCTGGAGGATCGTAGACAGGAGCAGCAGAGACACCAGCAGAGCCTCAAGATGTTGTCAGATGAAGTCTCCCAGATACAGGAGGTGAGATACTGTCTGAAGACCCTGAGGGAACAGATGGCCACCAAGAACAAAGGACAACACAAGTTTCTTGCTAGTGGCTACGGAGTCAGCACTCCCTCCAATCAGAACATCTCTTCTTCCTCAAAGGGAGGAGCTAAAGATGATGGGCAGggaggggaggatgaggtGGAGAGGGACAAGATGAGGGAGGTCAGTAAGCGTCTGTATGCTCAGCTACAGGAGGCCGAGAAGAAACAccaggaggagagagcgagactgCAGGCTGAGGGTGTGGATCTGCGCCAGCGTCTGGGGGAGCAGGAGGAGAAGCtgaagggggtggaggagagtagTGAGAGGAAGGACCAGAGGATTGAGGAGCTCCAGAGGCTGCTGGGAGGCATGGCGCAGGAGAGCCAAGCCCTACGAGACACactgaggaacagagaggaggaactCAGAGAATTACGCAAGATCAGAGAGGAGGGCAGGAACgaggagcagagGTCAGAGCAGTTGGAGAAGGAGCTGGCCATTCTGAAGGAGAAGATCCATCATCTAGATGACATGCTGAAGAGCCAGCAGAGGAAAGTCAGACACATGATCGAACAGctgcAGAACTCTCGTATGGTGATCCAGGAGAGGGACCGTGTCATCAGAGATCTGGAGGAGAAGGTGGCTTTCCTGGAGGCAGAGaaccGGGAGATGCATGATCAGATGGACTACTTCCTGGGAGGTGAAAGGTCAAACTCGCACCTCTCATCAGACCGCCACGCCCAGATTGTCTACAGTAAGCCTTTGAAGCCCAGCAACTCGTCCAACAAGCCTCTTCCCTTCATCAAAATCATTGAGACCAAGTCCTGAACTGGTGAAAGCGAGGGAGAAGGTTAACCTAACGACACCAAACCTGCTAAGCTAAACAACAACGGACTGAAATAGACCACCACCACATTACTACCACACCAACATCACAATGCACGTATGAAGTTTAAACTGAGGTGACCACAACATCACATCAACTGACCACCAGCTATGACCATCACCCACCCATGGCCACACTCCTTCGATAGGAcactatgcagtgtgtgtgtgtcagaggaggctggtggaagaAACTATTTATTTATGAAGTGTCATGGTTTATACAAAGTTATGAAGGccatgtttgttattttgttcgttGAGAAAGTGGGATGTTTGGTCTAGTATGTGTGGATTAGAAGTCTTCCTCACCAATACTGATGTCACTTTAAAGTCTAAAGGAAATGAAGATGATTCATTCTGACAAGTACTTACTAACCTTGCAAGAAGTCTTGTTGACATGATCCACATTTTTGCATGCATTTCAGTTACCTGACGTTTCATCCACTATCACCAGCTTTGTACACAACTATATGTATTTGTTTATGTGGTATTCTTTGATGTCCCTGTAGTCTCACTCTGGGATTTGTTTGTTAATTTTATCCTTCAGACAGGAATGTTTGGCCTGACACTTAGTGTGTGACAATCATCTTTATGTATTTATGTGAAAATACAACTTTCATTTTAGGGAAACCATTTTCAGTAGACATTTTAGTGTGTGTTAACAACATATATActttgtgttttatttattttaataaatatataaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251980 lncRNA downstream 25556 7339207 ~ 7339861 (-) True G220819
TU251870 lncRNA downstream 45930 7314310 ~ 7319487 (-) True G220729
TU251951 lncRNA downstream 65101 7300083 ~ 7300316 (-) True G220796
TU251949 lncRNA downstream 67015 7298165 ~ 7298402 (-) True G220794
TU251947 lncRNA downstream 73368 7291837 ~ 7292049 (-) True G220792
TU251953 lncRNA upstream 11939 7406437 ~ 7408110 (-) False G220797
TU251954 lncRNA upstream 11939 7406437 ~ 7408110 (-) True G220797
TU252051 lncRNA upstream 83648 7478146 ~ 7479468 (-) True G220879
TU252063 lncRNA upstream 100125 7494623 ~ 7494865 (-) True G220889
TU252068 lncRNA upstream 104015 7498513 ~ 7502503 (-) False G220892
XM_036975430.1 mRNA downstream 22134 7323036 ~ 7343283 (-) True LOC110536068
XM_036967387.1 mRNA downstream 44439 7221996 ~ 7320978 (-) True LOC110520786
XM_036967380.1 mRNA downstream 54314 7221996 ~ 7311103 (-) False LOC110520786
XM_036967403.1 mRNA downstream 54314 7221996 ~ 7311103 (-) False LOC110520786
XM_036967377.1 mRNA downstream 74875 7221996 ~ 7290542 (-) False LOC110520786
XM_036967443.1 mRNA upstream 13754 7408252 ~ 7436195 (-) False LOC110520792
XM_021588963.2 mRNA upstream 111703 7506201 ~ 7510860 (-) True LOC110508441
XM_021588983.2 mRNA upstream 122697 7517195 ~ 7523801 (-) False LOC110508454
XM_036967476.1 mRNA upstream 122697 7517195 ~ 7523907 (-) False LOC110508454
XM_021589000.2 mRNA upstream 122697 7517195 ~ 7524541 (-) False LOC110508454
TU251896 other downstream 163996 7176392 ~ 7201421 (-) True G220751
TU251306 other downstream 265247 7099338 ~ 7100170 (-) True G220261
TU251284 other downstream 281726 7082745 ~ 7083691 (-) False G220242
TU251262 other downstream 303586 7019976 ~ 7061831 (-) False G220229
TU251959 other upstream 34172 7428670 ~ 7436171 (-) False LOC110520792
TU251958 other upstream 34336 7428834 ~ 7436171 (-) True LOC110520792
TU252079 other upstream 122702 7517200 ~ 7524492 (-) False LOC110508454
TU252080 other upstream 122702 7517200 ~ 7524492 (-) True LOC110508454
TU252088 other upstream 133528 7528026 ~ 7530317 (-) True LOC110508472

Expression Profile