RNA id: XM_036967452.1


Basic Information

Item Value
RNA id XM_036967452.1
length 2851
RNA type mRNA
GC content 0.50
exon number 6
gene id LOC118945274
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7437011 ~ 7447882 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCACCACCACACCCATTTCCCAACTCCACCaaactctttctctcacacacgcacTTCTCTCTCCAGCACTCAGCTTTGACAGCCCGCTCCATACACCAGTCGCTCCGGGAATGGGATCATCATTAGTGAGTGCGAAGAAAAACTTCCAGTTCTTCCGATTCTACGCTCTCCAAAGACTACTCTTCAAACTGCGGGGATAGCTTCGAGATAAAGCGATAGCGACTGTCAGAAATATATATTACAGGCGTTACAAGTTGATGAAAGGAGAGGTAACTTTACGCACTGTGGAACGACAAAGAGTATTGGGTCAAGCGACAAATGGGGTGAAGTTTGGAGTTAAAATTATATGAGAACATTTACTACTAAATTTATGGGGTAGAAATCATTATTAATAATGTTTTGAAATAAATTAACATCACAAAGGGGGTAATTCGGATAAGATATCAGGCGCGAGGCGCGTAAACGTAGGCCTATGTGGTCGTGGATGAATGTGCTTGGCAAGTTTTTGTAGGCTAACCAAATATTCTCTGTGACTCGATTGCGAATGATTTATAAACATTAAGACTAAGTAGGCCTAAGTGAGTGTGTTATATTAGGATAAGTTTGGAGCCAAAGCTAGAAACCAAAAAACTGCCACTGATCGTAACCAGCAATGGCAAAGTGGTTTAGTTCCGCCATCAATCTGAAGAACGGGACCGAACGGGTCCGCTCTGCCTCGGAGTCCGGCACTCAACCCCGAACCAGACACGGGTTAACACCGGGGACCAGTCTGAAGGGGAACCGGGTCAAGGAAAGTGCTGGAGGGATAGGCTCTATACTGACCGGAAGAAACCGGAAAAACTCGGCCATCGAACTGGGTCGGAACGGCTCGGGTACTGGCGGGAACTCGTTTAAGGACGGTAAGATCTGGGACAGTCTCATCCCTGGGAAGAGTAGGAAGAATTCCAAGCTCGAGGTGGGGCCATCTGAGGAGCATCGGCCCACCAGGACATCCAGTTTGGCGCATGCGTGCATCAGCAGGATGATCAAGGTGGACAAACAGGACAAGGGTCCCAAACATAGCGGTACAGGTGAACAGGTGGGATCCGAAAACGAGAGGGAGAAGGTGGACATCAAAACAACGATGCTGATTATTCTGGAGGACTATGCTGACCCGTTTGACGCAGAGAAAACGAGGGAGCAGAGGGaggcggagagggagggagagaacgatGGATACATGGAGCCCTATGACGCCCAGGTTATCATCACAGGTATTCGTAGGCGGGGCTCCAAGGACCTGCTGAAGGTGTGTGTGCTGCTTCCCaagggagatggagaagggggCAAGCCCGCACCCCCCCACATCTACGACACTCCCTACGAGGGGCTGCTGGAGACAGATGGGGAGGCAGGAGGGGTGTGGATCCCTGTGACACGGCCGGAGTCAGACCCTCGCCCCCCTGGAGAGTATGAACTACCCTGGGAGTGGAGGAAGGAGGACATCGTCAGAGCACTGACAGcccagtTTAAGAAGGGAATGAGCAGTTTGCCCCCTAAAGAGGAACCTCCTCCACCCATCAGACAGCAGACTCTCAGTCATCAGCAGACCCTCAGACAGAAGACCTGGAACAAGAAAGTCCtcgtcccctctccctcctcccctactcctcccATTCTCaagctctctcctccctcacctctctctcattcctctcccccctctcccacctctcacTCTTCTCTCACTCCCAAACTTTccccatcctcttctcctccctccaccacctccacacccaaCGCAGAGACAGCCAAAGTGGACCCCACCCTGCCCCTGGAGAAACAGAGcTGGTACCATGGCAGTGTGAGTCGCCAGCAGGCAGAGGCTCAGCTCCAGCGCTGCAGGGATGCCAGCTTCCTGGTTAGAGACAGCGAATCAGGGACCAGCAAATACTCCATCGCGCTCAAgaccagtcagtgttGTGTCCATATCATCGTGGCCCAGACTAAAGGCAGTAAGGGTCTGGGTTATACTCTGGATCAGAGTAGCTGTGTGTTCAACAGTATACCAGAGGTGGTGCATCACTACTGTACACACAGACTGCCCTTCACTGGAGCTGAACACATGACCCTGCAACACCCTGTCCCCAGgccacactgaacacacactgaacacacacaccactgcaaaGGAGTAGCAGGTCTCACCCAAACAGCCTGAGAGGTACAGTATCATCTTGAGTTTCTCCAATGCACAGCCTAGTGGTCAAACCTTCACACTGCATAGCACAGAGAACGTTTCAGGAGGGAATAATGTTCTGTACTATGTATGATGTCATGTTTCATATGGGCCCCAGAAAGACTGGCTGATGCTTTTGCAGCGGCTAATGGGGAGCCTGATAAATACCAAATGCCAAATGTTCAGCTAGTTAGCCTAAGTACCTGTATGTGTCGTGTGCTCTGGGTAATATTAGGCCTCATTGATTTGATAGCTGTCTGTATTatcatcagacacacacagtatgttACAGTATGTTAGACAGAAGTATGATCTGGTTTTGATGTGAATGTATTTGCACATGTGATGGTTTCTGCAATGACCCAGGCTTGTTGCTGTAATAGCCAAGGAGCCGAAGCTTGGAATTGTAATATCCCAGGCTTGTTAATGTAATAACCCAGTCTTGTTACTGTAATAACCCGGGCTTGTTACTGTAATAACCCAGGCGTGTTACTGTAATAACCCAGGATCTTTACTGTAATAACCCAGGCATGTTACTGTAATAACCCAGGGTGTTACTCTAATAACCCAGACTTGTTGTACAATGCATAAAATACTGTAATGTTGACTGGaataaagtgactgtgcatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251568 lncRNA upstream 6883 7429644 ~ 7430128 (+) True G220476
TU251567 lncRNA upstream 7900 7428085 ~ 7429111 (+) True G220475
TU251470 lncRNA upstream 17617 7406440 ~ 7419394 (+) True G220397
TU251557 lncRNA upstream 19155 7414412 ~ 7417856 (+) True G220466
TU251552 lncRNA upstream 24261 7410342 ~ 7412750 (+) False G220463
TU251613 lncRNA downstream 42272 7490154 ~ 7490423 (+) True G220513
TU251618 lncRNA downstream 47162 7495044 ~ 7495322 (+) True G220518
TU251629 lncRNA downstream 64169 7512051 ~ 7513038 (+) False G220527
TU251633 lncRNA downstream 64169 7512051 ~ 7513038 (+) False G220527
TU251627 lncRNA downstream 64301 7512183 ~ 7513038 (+) True G220527
XM_021621564.2 mRNA upstream 79603 7348131 ~ 7357408 (+) False LOC110536044
XM_021621583.2 mRNA upstream 79603 7348131 ~ 7357408 (+) False LOC110536044
XM_021621592.2 mRNA upstream 79603 7348143 ~ 7357408 (+) False LOC110536044
XM_036967426.1 mRNA upstream 79603 7348434 ~ 7357408 (+) False LOC110536044
XM_036967358.1 mRNA upstream 266568 7161950 ~ 7170443 (+) False LOC110508415
XM_036967459.1 mRNA downstream 12558 7460440 ~ 7500537 (+) True LOC110508431
XM_021589071.2 mRNA downstream 170486 7618368 ~ 7627967 (+) True LOC110508507
XM_036967633.1 mRNA downstream 493420 7941302 ~ 8086452 (+) True LOC110513974
XM_036967642.1 mRNA downstream 700525 8148407 ~ 8159396 (+) True efna1b
XM_036967655.1 mRNA downstream 722752 8170634 ~ 8176258 (+) False LOC110520790
TU251531 other upstream 55448 7378258 ~ 7381563 (+) False G220445
TU251520 other upstream 71726 7363298 ~ 7365285 (+) False G220435
TU251521 other upstream 71726 7363298 ~ 7365285 (+) True G220435
TU251513 other upstream 72565 7359668 ~ 7364446 (+) False G220435
TU251514 other upstream 72565 7363298 ~ 7364446 (+) False G220435
TU252485 other downstream 722825 8170707 ~ 8172223 (+) False LOC110520790
TU252560 other downstream 951189 8399071 ~ 8489067 (+) False G221299
TU252562 other downstream 951189 8399071 ~ 8489067 (+) False G221299
TU252563 other downstream 951189 8399071 ~ 8411530 (+) True G221299
TU252829 other downstream 1281095 8728977 ~ 8732478 (+) False G221514

Expression Profile