RNA id: XM_036967459.1


Basic Information

Item Value
RNA id XM_036967459.1
length 3705
RNA type mRNA
GC content 0.51
exon number 6
gene id LOC110508431
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7460440 ~ 7500537 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACTCGACTCCCAAGTATACCTGGAGATTTTACACACGAATAAAACTATGTCTGTACTGAGAAGACCTGACGGAACCATGACAGGTACCGAGTGAAGAATTAAATACGGAATATAGAGAAAAGAACACTGCGTGTGTTCCGGAGGCGTTCGCAGTTCGAGTGAGCACCTTTTGGTTCGGAgcgcacacatacgcacgcatCTGAGCAGCGATGGGCGCTTGGACGCTGCTGCTGTGCCTACTCGCCATTGTGAGAGGCAGCCTGGGGGCGGATACTGAAGAGCGGCTGGTGGAGTACCTTCTAAACCCCGCCCACTATAACAAACTGATCCGCCCAGCGACCAATGGCTCTGAGCTGGTGACGGTTCAGTTGATGGTGTCACTGGCCCAGCTCATCAGTGTGCACGAGAGAGAACAGGTTATGACCACCAACGTCTGGCTCACACAGGAATGGCAGGACTACCGTCTGACTTGGGTCCCTGAGGAGTTTGATGGCATGGAGAAGGTCAGACTGCCTTCCAAACACATCTGGCTGCCCGACGTTGTGCTGTATAACaaTGCTGACGGAATGTACGAGGTCTCCTTCTACTCCAACGCGGTGGTCTCCCATGACGGCAGTATCTTCTGGCTGCCTCCAGCCATCTACAAGTCAGCCTGTAAGATCGAGGTCAAACACTTCCCCTTCGACCAGCAGAACTGCACCATGAGGTTCCGCTCCTGGACCTACGACCGCACAGAGATCGACCTGATCCTGAGGTCCGACGTGGCCAGCATGGACGACTTCACACCCAGCGGAGAGTGGGACATCATCGCCCTGCCGGGGCGCCGCAACGAGAATCCTGCCGACCCCACCTACGTAGACATCACTTATGACTTCATCATCCGCAGGAAACCTCTGTTCTACACCATCAACCTCATCATCCCCTGTGTCCTCATCACCTCTCTGGCTATCTTAGTGTTCTATCTGCCCTCTGACTGTGGAGAGAAGATGACCCTGTGTATCTCTGTCCTGCTTGCCCTCACTGTGTTCCTCCTGCTGATCTCTAAGATCGTCCCCCCCACCTCCCTGGACGTTCCTCTGGTCGGGAAGTACCTGATGTTCACCATGGTCCTGGTGACCTTCTCTATtgtcaccagtgtgtgtgttctcaacGTGCACCACCGctcacccaccacacacaccatgCCCCCCTGGGTCAAGCTGGTGTTCCTCAACAAATTGCCTGCGCTGCTCTTCATGCGCCAGCCCCAGAACAGCTGCGAGCGTCAAAAGCTGCGCCAGCGACGGAGGGGCcaggagcagagggaggggggcagggaTGGGGGCTCTGCCGGGGGGCTGATGGTGGGCCTGGGGCTGGGGGGCGGAGGGGGTGGCACGGATAACAACGAACCCTGTACGTGTTACGTGAACCGGGCGTCGGTGAAACAGTTTGTAGGGGAGCTGGGAGGGGGcacggggggaggagggggaggggggtcgaTGGAGGGGCTGAACGGGCTGAGGGAAGACAGGGAGGGGGGGCAGGGGAACCGGCCCAGGGGGAAACAGGTAGGAGGGGGCCCAGCCCTGACCCAGGCCGTGCTAGGACAAGCCTGCCCTGGGTTGGAGGAGGCTGTCAACGGGGTCCGCTTCATCGCCAACCACATGAAGACTGAAGACGATGACCAGAGTGTGAGCGAGGACTGGAAGTATGTTGCCATGGTGATCGACCGTCTCTTCCTGTGGATCtttataattgtgtgtgtgtctggaaccGTCGGGATGTTCCTCCAGCCACTGTTCCAGAACTACACTGCCAAGACCATCACCAACACCAATGGCTGACCAACCAGGTGCCCAGCAGCATCGATGGACACCGCCCCGACCCAATCAGCACAGCAGGACAGGGGCAGGAGGGAGGCACCTGCCCAGCAGGGGAAGTGGGTTTTATTAAGTCTGTGGAACTATATTGGACAGGAGCCACACCTGTTAACCTTTATAGCCTTTCTACTGAACTGTTCTGAACTGAAGAACTAAACTTAACACCAACATCGTATGAAATATCTTTTTTTTTTCCAGAGGAGGGATAAATGGATGGACAACTCTTCCCTTTTTCCCAGAGGAAGGTGGAGttatgcctctcctctctccctctgagtGATAAGCAGCAGAAGCCAATCAGTGGGAGAGAGGACAATCTCTAAATTGTTTGACATCCTGTAGAACGCTACGCCAGCCAATCAATGCTTTTCATTCCAAGCTGACTGTGCAAGCTTACTGAGAGTATATTGTCGCACCTTCAACTGGTACAGAACTTAATGCTTCAGTAACAGAACCTTGATTGGAAACTGTGTCAACCAATCGGGAAAATGTAAAGGCAAGTGGGGGGTTGTCAAGGTTCATAATTGTTTTTCCAAGCCACTTCTGTTAAGCCAActgatagtacagtacagtatattttaCCATAGCCTAGCAGTGTACCACAGTATAGCTTTGAATATAATATTATTGCGATTTCTCTGTGTCTTCCTGAGAGAAAGGTAGGGTGCAGTGGTTTGTTGTATGATTCTCTACGCTTTTAAACAAGAATGTGATATTACCTGTACTACACAGCCTGTGACGTGCACGCTAACACTATATGAGTAGAAGAGACAGATcgtgaaggagagagatgaaagagagagagggatattgACAGAGAGTTAGATGGAATGAGATGAAGTAGTTATAGTGAATCCCAAACCGCCCCCTTGCCAATACCAACTCCCTCCGTTGTCACGTGTTGTTGACGAAGCTCCGAGGGTGACTTCCAGAGAGTGTCGATGGGATCAATAAACCCACCGGGACCAGTCTCTGAATCAGACATAAACACATGCACGTGGTATATAATTAGACACGCCTCTCCATTTTTTACAATTCAATTGTGCTAACTTCAGACATATAGCAGTGAGTGTCGGGATAGCACTGCGCTCTGAAGCCTGCATCCGTGCTGGCTAGGTCGAAGTGGCTATAGGAGGATCTAATTAGCCCCTACACCCCCATAATTTTTCACTCCCTCAGCTTTAGTACACTTGTGTAAATGGCAGAGGTGGAGAGGCAGGGGGTGAAGGGGCAGGGGGTGATTTGGGATTCAACCTTAGAGAAAGATAAAGGTGTAGGATGTCTGCGTATACAGCTCTATTGGGATAATAGCAGATTGTGCCATAGGGTACAGTTGCAATGGGATGAGTCTAGATTCAGTAAGTTCCTGGGAAACTGAGATTGGGTTGAGCCAAGATGGAGTAAATTCCCtctttttacagttttttttatttatttaaactttatttaactaggcaagtcagttaagaacaaattcttattttcaatgacggcctaggaacagtgggttaactgcctgttcaggggcagaacgacagattagtaCAGATCAGTTGAGCCATGATTGCACAAAATTGGGTGGTCGAATATAGAACTGACAGATGATATGTATTGTTGGAATAAGGATGTTTTCTCACAAAATGTAAGCTATTGTGTGTTATGAATGTTTGCACAAATGTTAATTTCTGTCATCACTGTGATTATCATTATCAGAGTAAGACAGTGTctcactctgtcctctcttcctttcctccctctctcctcccccctcctgtcctccccttcttctccctctctcctctcctccttcctcatcatgtcctcccctccttccccccctgc

Function

GO: NA

KEGG:

id description
K04813 CHRNB2; nicotinic acetylcholine receptor beta-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251568 lncRNA upstream 30312 7429644 ~ 7430128 (+) True G220476
TU251567 lncRNA upstream 31329 7428085 ~ 7429111 (+) True G220475
TU251557 lncRNA upstream 42584 7414412 ~ 7417856 (+) True G220466
TU251551 lncRNA upstream 47690 7410872 ~ 7412750 (+) False G220463
TU251629 lncRNA downstream 11514 7512051 ~ 7513038 (+) False G220527
TU251633 lncRNA downstream 11514 7512051 ~ 7513038 (+) False G220527
TU251627 lncRNA downstream 11646 7512183 ~ 7513038 (+) True G220527
TU251636 lncRNA downstream 15790 7516327 ~ 7516551 (+) True G220529
TU251609 lncRNA downstream 16665 7517202 ~ 7524528 (+) True G220510
XM_036967452.1 mRNA upstream 12558 7437011 ~ 7447882 (+) False LOC118945274
XM_021621564.2 mRNA upstream 103032 7348131 ~ 7357408 (+) False LOC110536044
XM_021621583.2 mRNA upstream 103032 7348131 ~ 7357408 (+) False LOC110536044
XM_021621592.2 mRNA upstream 103032 7348143 ~ 7357408 (+) False LOC110536044
XM_036967426.1 mRNA upstream 103032 7348434 ~ 7357408 (+) False LOC110536044
XM_021589071.2 mRNA downstream 117831 7618368 ~ 7627967 (+) True LOC110508507
XM_036967633.1 mRNA downstream 440765 7941302 ~ 8086452 (+) True LOC110513974
XM_036967642.1 mRNA downstream 647870 8148407 ~ 8159396 (+) True efna1b
XM_036967655.1 mRNA downstream 670097 8170634 ~ 8176258 (+) False LOC110520790
XM_021598321.2 mRNA downstream 744691 8245228 ~ 8249653 (+) False LOC110520877
TU251574 other upstream 12563 7446369 ~ 7447877 (+) True LOC118945274
TU251531 other upstream 78877 7378258 ~ 7381563 (+) False G220445
TU251520 other upstream 95155 7363298 ~ 7365285 (+) False G220435
TU251521 other upstream 95155 7363298 ~ 7365285 (+) True G220435
TU251513 other upstream 95994 7359668 ~ 7364446 (+) False G220435
TU252485 other downstream 670170 8170707 ~ 8172223 (+) False LOC110520790
TU252560 other downstream 898534 8399071 ~ 8489067 (+) False G221299
TU252562 other downstream 898534 8399071 ~ 8489067 (+) False G221299
TU252563 other downstream 898534 8399071 ~ 8411530 (+) True G221299
TU252829 other downstream 1228440 8728977 ~ 8732478 (+) False G221514

Expression Profile