RNA id: TU252088


Basic Information

Item Value
RNA id TU252088
length 1368
RNA type TUCP
GC content 0.39
exon number 4
gene id LOC110508472
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7528026 ~ 7530317 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAGAAACCAGTGGTCAGTGTGGGGTAATTTAGCTTAcactattacagacaccttaaccTTGAAGTGGACAGAATGGACGCCATGACATGAGAAACATTTacaagagatggggggggggggggggcttgattTTATGAAGAGGAGGTGAGTataagagtgagaaagagagagaaaaacttACCTTCACACGTACCACCTCAACACACTCAACACACTCACCACCTCAGCTACCGGCAGCAGTGTCCAGtgatGGAGTCAGCCATTGGTGTACTCGTTTCCCAGTTCAAGGCGTTTGCTGGAAGTGATGGATCCTCAGACACACTGAGCAGAGATGAGTTCCAGAGCCTGGTCAAAACACAACTCCCCAACTTCGTTAAGAACGCTGATGACCCAGCTGTCATCGACCGACTCATGGACTCAATTGACGAGAACAACGACGGAGAGCTCACCTTCCTGGAGTTCTGGCAGCTGATTGGACGACTAGCAAATCAACACGGCGGCTTTATCCAATAGGATGTCTCCATGTCTTGTTCTGTTACTACCATATGATTACAATGATAAGTTATTCTAGTGGTATGGTTATCCCCATGTTGTGTTTCTAAATTGGCAAGTGTTTGCTAAAGCTATGGAGGATTGGTCCAGCAAAATAAAACATACAACTATAGTATATATGACTACCTGaccttagtctctctctctctccctccctctctaaagcTATGGAGGATTGGTCCAGCAAAATAAAACATGGATGAATCATACAACTATAGTATCTATGACTACCTGaccttagtctctctctctctccctccctctctaaagaTATGGAGGATTGGTCCAGCAAAATAAAACATGGATGAATCATACAACTATAGTATCTATGACTACctgacctccctccctccctctgtctttctttctctataaTTACATCTCGCCAAACTAatactgcatacacacacacacacagagcagtgaTGGCATCGGACTGTGTCTGCATTGTCTGTGTAAATGTAGAACTTGGTGTGTAAGTAGAATTTATTCTGGCCCTGTTGTGAATGAGACTGCTAGTGTTTTCCAGGAGGTTGTACCTCTTGCCAAATGAACAGGAGGCTGTAGGAATGAAAGTGAAAAACACCATTAAGTGTATAGGCACTAGGCAGGAGTAAAGAATTGTGGACATAGCCTGGATGTCAGTCATACTGCTTCAGCCAATGATGATTGCTATGATGTTTGGTATGATGCTTGGTATGATGTTTGGTATGGCAGCAGGGAAGGAGTTGGCTAAAGCAGCAGAATATCTGGCTCCCAGGCTAGGGAGAATCAGTAGCAGGGTAAAATCAATGGGGAAGCCAAGACATTAAAat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252072 lncRNA downstream 23412 7504333 ~ 7504614 (-) True G220894
TU252068 lncRNA downstream 25523 7498513 ~ 7502503 (-) False G220892
TU252069 lncRNA downstream 25523 7498513 ~ 7502503 (-) True G220892
TU252063 lncRNA downstream 33161 7494623 ~ 7494865 (-) True G220889
TU252051 lncRNA downstream 48558 7478146 ~ 7479468 (-) True G220879
TU252091 lncRNA upstream 4899 7535216 ~ 7535425 (-) True G220908
TU252029 lncRNA upstream 19356 7549673 ~ 7551927 (-) False LOC110508481
TU252030 lncRNA upstream 19356 7549673 ~ 7551927 (-) True LOC110508481
TU252032 lncRNA upstream 21865 7552182 ~ 7552852 (-) True G220866
TU252034 lncRNA upstream 26026 7556343 ~ 7558636 (-) False LOC110508494
XM_021588991.2 mRNA downstream 3482 7517195 ~ 7524544 (-) False LOC110508454
XM_021589000.2 mRNA downstream 3485 7517195 ~ 7524541 (-) False LOC110508454
XM_036967476.1 mRNA downstream 4119 7517195 ~ 7523907 (-) False LOC110508454
XM_021588983.2 mRNA downstream 4225 7517195 ~ 7523801 (-) False LOC110508454
XM_021588963.2 mRNA downstream 17166 7506201 ~ 7510860 (-) True LOC110508441
XM_036967504.1 mRNA upstream 1231 7531548 ~ 7552027 (-) False LOC110508481
XM_036967511.1 mRNA upstream 24469 7554786 ~ 7573519 (-) False LOC110508494
XM_036967516.1 mRNA upstream 24469 7554786 ~ 7573519 (-) False LOC110508494
XM_036967525.1 mRNA upstream 24469 7554786 ~ 7573519 (-) False LOC110508494
XM_036967534.1 mRNA upstream 24469 7554786 ~ 7573519 (-) False LOC110508494
TU252079 other downstream 3534 7517200 ~ 7524492 (-) False LOC110508454
TU252080 other downstream 3534 7517200 ~ 7524492 (-) True LOC110508454
TU251959 other downstream 91855 7428670 ~ 7436171 (-) False LOC110520792
TU251958 other downstream 91855 7428834 ~ 7436171 (-) True LOC110520792
TU251896 other downstream 326605 7176392 ~ 7201421 (-) True G220751
TU252033 other upstream 26070 7556387 ~ 7558636 (-) False LOC110508494
TU252035 other upstream 28622 7558939 ~ 7573472 (-) True LOC110508494
TU253177 other upstream 819002 8349319 ~ 8350289 (-) True G221788
TU253206 other upstream 864044 8394361 ~ 8410809 (-) False G221806
TU253214 other upstream 972867 8503184 ~ 8523208 (-) True G221807

Expression Profile