RNA id: TU252029


Basic Information

Item Value
RNA id TU252029
length 2165
lncRNA type sense_over
GC content 0.38
exon number 2
gene id LOC110508481
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7531548 ~ 7552027 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acacacacacacagtcttgtatatcTAACCTTGTATAACTAATCCATTCAAAATCCTGTACCCTAACATTAATCcttaaacctagctcctaaccccaaaactaaacctagctcctaaccctgaaCTTAATTCTAACCATAACaccaattctaaccttaaccctaaaccccctagaaatagcattttaccttggggactaacaaaatggccccagttggtcaaatttgtttgtttactattcttgtggggacttctggtccccacaaatatagtgaaacacgtccacacacactaTCTACTAATGTCTTTAATCTTATGCTATTTTCCATTTCAACAGTTTAAAAGTCTGAATGAATAATgtattacacacaaacacacacacctcaggcaTTCATTTCAGAGGGATCTGTGAAGTTGTTgatgggagtagagagagagactagcagGCCAGTGGCACTGAGGAAACAGAGGTCCATCCAGCAGTCTTAACATAGCTAGTCGGAGGGGACTAGAACATGTCTCTCAATGGccaatcccaaatcaacccctCGCCTAACCTCTTACTGTCCCCAAGCACATAGGAAACAAAACTACCCAGGATCGCTAGCCTAGAAAAGTGATGTAACACTTGTCTGTTTCATAAATAGGAGTGTGTTTCCGCTGTAGATTACACTATGCATTGTGCACTGCCAAGTTAACCCTTTCACTGGCGGCATGTAGCGTTGGTAGCTTTCATTCATGTCAATCATTTCTGTTAACTTATTTATTAATAACTTTATTTTTGTTTGTGAGATGTGGTCATTAAAGGATAGATTTACAAAGTGACTGAAGTACTGAGGAGTGAGGGTAACGTGATGGTGATGCAGGTCTTTATTTTCATGTCAATGTTCAACAGGTTGTAAATAGTGCACTAAAACACCACACACTTACAAAACATTTGAATGATATAttctatttaaaataaaatagagGATTTTATAAATGTCAGAAGGCACATTAACTTGCTTTGGAGACACTGTAATATGATGACCATGCATCCATCCTTTTGGGTAAAGAGGGAATGTATTGAAAACACTAAAACGTCTTTACTTTTGGGTAAAGAGGGAATGTATTGAAAACACTAAAACGTCTTTACTTTTGGTTATGTTGCAACAGTTATTATGAAGCAAAATGCTCATGGCACTTAAGATAAGGATTGTCTTCAGGAAAGAAAACAGTTGGATGTTGTGGTTCAACTTTACTTTACAGTCCTGTATTTACCAGGTATTTACTTAAATAGTAGAATGATCATTAGAATATCCACCTAATGACAacttttattatttttaaaaaaagttaATTTGAAGAGTTTCTAATTCTGTTGAATTCTTTGAGATAAGTGCCAAAAGGTATGTCTGTTACCATAGTTTCATAGTAAAGACCAGGTCCAGGACCAGATgaagcagggctgtaaaataaagtCTGACTATGTTTACATGATGGTAACTGTGTAAATCTGATGATTGACAAGCCCATATCCACTCATTAAAACATTGATTGAACGGACATTCAAGTTGAACCACGTGGGCTTACAGAGGCATCGTTGAAAACTCCACTTTGTGTGATTTTAAATGTGCAAATGTAACATGGTACGATTGTGACAAAAGCAACCTAATAAATTAAGCTTTGACCTTCTGAAGAACagttgtcatgttgttgtgtccAAAATGTCAGCTTTATGCCGACTGATAAGTGGTGAGAGGTGAGAATGAAAAGTATTGCTGTTCTGTCCGTTACAGGTCTGTTAATTAACCTTCAGCACTTCACAGCAACAGAGAACCTCTATCTGACTATTTTAAACCTACACAACAACTTTTGCAGTAAAGACATTGTTTTCACTTCCCTTTTCTCAAGACATATTTAAAGGTTGTTCTCTAGTATTCTGCACGAGACTGTAGCGGTCTAGGTGTGGACAGAAGTACAGACTTCTCCCCCCATAGAAGCACAGAGGTCTGGCACAGGAAGACCGTTTTTAAACACGGAACACTGAGGTGAGCTGTCCTACTTCACTTTGCTGTCCTGTTCTCCACTTGTATAGTCCATTTAGTTTCCTATCAGCTGGTATGTACTTGGAATTTAATGATTGTTAATAAGGTGTTTGTTATGAGGATTATGTAATTACTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252091 lncRNA downstream 14248 7535216 ~ 7535425 (-) True G220908
TU252072 lncRNA downstream 45059 7504333 ~ 7504614 (-) True G220894
TU252068 lncRNA downstream 47170 7498513 ~ 7502503 (-) False G220892
TU252069 lncRNA downstream 47170 7498513 ~ 7502503 (-) True G220892
TU252063 lncRNA downstream 54808 7494623 ~ 7494865 (-) True G220889
TU252032 lncRNA upstream 255 7552182 ~ 7552852 (-) True G220866
TU252034 lncRNA upstream 4416 7556343 ~ 7558636 (-) False LOC110508494
TU252106 lncRNA upstream 37600 7589527 ~ 7591887 (-) True G220922
TU252117 lncRNA upstream 77428 7629355 ~ 7630077 (-) True G220929
TU252118 lncRNA upstream 79125 7631052 ~ 7631372 (-) True G220930
XM_036967491.1 mRNA downstream 19490 7528527 ~ 7530183 (-) False LOC110508472
XR_005040385.1 mRNA downstream 19490 7528527 ~ 7530183 (-) False LOC110508472
XM_036967497.1 mRNA downstream 19545 7528527 ~ 7530128 (-) False LOC110508472
XM_021588991.2 mRNA downstream 25129 7517195 ~ 7524544 (-) False LOC110508454
XM_021589000.2 mRNA downstream 25132 7517195 ~ 7524541 (-) False LOC110508454
XM_036967511.1 mRNA upstream 2859 7554786 ~ 7573519 (-) False LOC110508494
XM_036967516.1 mRNA upstream 2859 7554786 ~ 7573519 (-) False LOC110508494
XM_036967525.1 mRNA upstream 2859 7554786 ~ 7573519 (-) False LOC110508494
XM_036967534.1 mRNA upstream 2859 7554786 ~ 7573519 (-) False LOC110508494
XM_036967545.1 mRNA upstream 2859 7554786 ~ 7573519 (-) False LOC110508494
TU252088 other downstream 19356 7528026 ~ 7530317 (-) True LOC110508472
TU252079 other downstream 25181 7517200 ~ 7524492 (-) False LOC110508454
TU252080 other downstream 25181 7517200 ~ 7524492 (-) True LOC110508454
TU251959 other downstream 113502 7428670 ~ 7436171 (-) False LOC110520792
TU252033 other upstream 4460 7556387 ~ 7558636 (-) False LOC110508494
TU252035 other upstream 7012 7558939 ~ 7573472 (-) True LOC110508494
TU253177 other upstream 797392 8349319 ~ 8350289 (-) True G221788
TU253206 other upstream 842434 8394361 ~ 8410809 (-) False G221806
TU253214 other upstream 951257 8503184 ~ 8523208 (-) True G221807

Expression Profile