RNA id: XM_036967539.1


Basic Information

Item Value
RNA id XM_036967539.1
length 3257
RNA type mRNA
GC content 0.51
exon number 11
gene id LOC110508494
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7554786 ~ 7573519 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGCCTTCCCGGTTGGACAAGAGAGAGTGGCGCACGCATGTGTCAAAGAGAGTCTTCCAAGTTCCGAAATTGGATGCATTCAATTAATTTGGCAGAAAAGGATTGATGCACGATTGTCATTTGTAAGGAAAACATCGCGTTCAGAGGTGCTGGTCAGAGCCACGAGGGGGCAATGTCTGACAGCAGTGGTGCTGCCAACAGCAGTAGCTGGACTGTCCTCACAGCTGAGGAGACTGTTGCTGAGACACTGAGGCCTGTAGCGAAGGGAACAGAACACCATGAaaatacacccagtcatactgctgcagagaaacctacagagAGTAGGCCTGGGGAGGATGCAGTGTCTGCTGAAGAGTCTCACTCTGTGAAGCTACAGCAGGAGACCCAGGAAacacaaccagagagagacaaggaTTACACCCCTGTTGTAGAGAGTCACACCCATGACCTTCCTTTTGACCCTGCCCCTGACTCGACCCCTGCCCTTGACTCCATCTCTGCTAGTGTTGCTCCTCTGAGCTCTCTGTTAGAAGTCCCCGCCCCCACAGGGCTTGACTCAGATACACACAGCCAATCCAGAAGCCTCCCTGGGAacccagcccctcccatctctGACCCTGATTCGTTCTCTGACTCCTACACCCACATTAGCTCCTCCCCCGACCTTGAAGAGCCCCCAGCCTTGCTGCTCAACACTGAGCCACCGGAAGAGGTGGGGCTTGTACAGGAAGCGGAGGGGTATATACAGGATGTGCATCATCATTATGAGGGGGGGCTTgggcaggaagaggaggagtctgATCTGTCTGAGGTCAGGGCCAAGACAGACTCCCATCTGGAAACGGAGGTGGTGGGGGAAGAGGTgtcaggggtgaggaggaggagggggtctcTCCTGGCGGCTCTGGAGCGGAtcgggaggaaggaggaggaagaggaggaggaggagaatgagttCCAGATTCCGCAGCAGAGGGAGCAAGAGGAGACTGGTTTCTCTCTCAACAAGTGCATCCTAGGAGCTGTCATACTGCTGGGCCTCGGAACCATCTTcttctcagGTGTCTTCATGGACTTGGATGatgAGGGGGACTATGATGCCAGGGAGCTGAGAGAAACAGAGGTGGTGGGAAAACAACAGGAATGGCTGAATCCTGAGGTTCCTCTTCCACCACCTGTAGAAGTTGACAGTACAGACCAACTGAATAAACTGGCTAAAGAAGACCCACGGATAGCTGTACTGCAAGCCCAACTCCTGGCACAGAAAGAGGAGCTAAAAGTAGCCCAGAAGGAGGcggaggatggagggaaggagagaaagaagagggaggaggtggagagggagcaCGGTAGGCTGAAGAAAGAGATGATGTCACTCCCTGTCCTTCAGAAGGAGAacgagaggatgaagagagagctGGAGTCTGTTCCTGTCTTACAGAAGGATCTAGAGACACTCGGAGCCACAGTGACTGAACTaaaacacagcacagCCAAGGATGCAGCTCCACCTCCAGTCTCTGCCTCTGTCCCGCCCCCCTCTGGCCAAGCTGGGGATGACAGCCAGAACACAGCAGGAACGATGGAGAGGGAGGGCAAGAAACCAGGgaagggagagaaaaaagagTTGAAGGAAGAGGAGACGGATTGGAATAAGGGAGGGAAGACGGATTGGAATAAGGGAGGGAAGACTGATTGGAATAAGGGAGGGAAGACTGATTGGAATAAGGGAGGGAAGACTGATTGGAATAAGGGAGGGAAGACTGATTGGAATAAGGGAGGGAAGACTGATTGGAATAAGGGAGGGAAGACTGATTGGAATAAGGGAGGGAAGACTGATTGGAATAAGGGAGGGAAGACTGATTGGAATAAGGGAGGGAAGACTGATTGGAATAAGGGAGGGAAGACGGATTATAAGGTTGAAAAAGAGTGGAGAAGTGGAAAATATGACCAGGAGAAAGAAGGAAAAGAGGAGAAAGAGTGGAAGAAGAAAGAAGACAAGAAGGGAGAATGGAAGAAAGATAAATCTAGCAGAGGGGATGAGGGCAAACCATGGAAGGACAGAGGAAACAAGATGGAATGGAAGGAGAAGAGTGAGAAAAAAGACTGGAAGGTGGAGAAATATTGGAAAAAGGAAAAACCTGAAAGATGGAGTGATGGCAAGGAGTGGAAGAAAGGCAAGGATGAGCGGAAGGGAAAAGAGgagaaaaatcaaaagaaaggaGGTTGGGTTGAGTGGAAGGGAGAGAAGAATGGAAAAGAGGACAAAAATCGAAGAAAAGGAGGTTGGAATGACGGCAGGGATGAgtggaagggagagaaggagtggaagaAAGACAAGGATGACTATAAGGACCTTGGCaaaggatggaaggagagaggagagaaaaaggagtggaagggagagaaagattggacaaagaaagacagaaagaaagacgtCAGTAAAGAGTGGAAGAGTAAGGACAACAGGAGAGAAAATGAGTGGTCGGATAGAAATAGAAAGATGGAAGgcttgaaggaggagagaaatggTGGGAACTGGAAAAGGGACAGAGGGAATGACAAGTATGAGAAGGACCaccaccactactccactactaaggaagggcagaaagagaaagagaggagaaggagagaaaagggccCTCCCCAAACCCACCGCAGACCCCCCCTTGAGCAACCTGACTACTGGAGTTACCAGAGAGAACGACTGCAGCACAAACCCAACCATCAAACCCACTGCAGTTCAGTGGAGGCCTGCGCTCAGGCAGAGGGGCTGCTCCCTGTCGCCATGCCGGAGTTTGAGGCCCTGCTCCTGGGTTACCTGGTCAAGGcagagagggtgggggtggaggCCTCCAAGAGGGAGGAACTCAGTAAGCTAACCAAGGAGTTCTTCAGTGACGGAGTGTTCGTTCACGACCAGATGAGCTTCAAGGACTTTGTGGAGGATGTGGATGACATCTTAGAGGATAtggtggaggatgaggaggtagaggaggaggtggatgaCTTTGAGGAAGAGGCAATGAACAGGTTTTCAGTtccagggggagaagagagggagaagtggaaGAAGGATAGTGGGAGAGGACGGGTGTGATGGAGTGAGAAAGGGAGTCAACGCATGTCAGGAGGAGCGGAAAGATAAAGGTGGAGGAAAATGGATGGATGTGCTGCAAGGTAGAATTTAGGAGGAGCAacacgcatatatatatatatatatatatatatatatatactgctccaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252032 lncRNA downstream 1935 7552182 ~ 7552852 (-) True G220866
TU252029 lncRNA downstream 2860 7549673 ~ 7551927 (-) False LOC110508481
TU252030 lncRNA downstream 2860 7549673 ~ 7551927 (-) True LOC110508481
TU252091 lncRNA downstream 19362 7535216 ~ 7535425 (-) True G220908
TU252072 lncRNA downstream 50173 7504333 ~ 7504614 (-) True G220894
TU252106 lncRNA upstream 16008 7589527 ~ 7591887 (-) True G220922
TU252117 lncRNA upstream 55836 7629355 ~ 7630077 (-) True G220929
TU252118 lncRNA upstream 57533 7631052 ~ 7631372 (-) True G220930
TU252121 lncRNA upstream 60797 7634316 ~ 7634807 (-) True G220933
TU252122 lncRNA upstream 61930 7635449 ~ 7636122 (-) True G220934
XM_036967504.1 mRNA downstream 2760 7531548 ~ 7552027 (-) False LOC110508481
XM_036967491.1 mRNA downstream 24604 7528527 ~ 7530183 (-) False LOC110508472
XR_005040385.1 mRNA downstream 24604 7528527 ~ 7530183 (-) False LOC110508472
XM_036967497.1 mRNA downstream 24659 7528527 ~ 7530128 (-) False LOC110508472
XM_021588991.2 mRNA downstream 30243 7517195 ~ 7524544 (-) False LOC110508454
XM_021589059.2 mRNA upstream 334 7573853 ~ 7575614 (-) True LOC110508498
XM_036967574.1 mRNA upstream 3489 7577008 ~ 7606615 (-) False LOC110520788
XM_036967579.1 mRNA upstream 3489 7577008 ~ 7617184 (-) False LOC110520788
XM_036967584.1 mRNA upstream 3489 7577008 ~ 7617184 (-) False LOC110520788
XM_036967568.1 mRNA upstream 3489 7577008 ~ 7617193 (-) True LOC110520788
TU252088 other downstream 24470 7528026 ~ 7530317 (-) True LOC110508472
TU252079 other downstream 30295 7517200 ~ 7524492 (-) False LOC110508454
TU252080 other downstream 30295 7517200 ~ 7524492 (-) True LOC110508454
TU251959 other downstream 118616 7428670 ~ 7436171 (-) False LOC110520792
TU253177 other upstream 775800 8349319 ~ 8350289 (-) True G221788
TU253206 other upstream 820842 8394361 ~ 8410809 (-) False G221806
TU253214 other upstream 929665 8503184 ~ 8523208 (-) True G221807
TU253420 other upstream 1189600 8763119 ~ 8763884 (-) True G221986
TU253443 other upstream 1231178 8804697 ~ 8817709 (-) False LOC110520835

Expression Profile