RNA id: XM_021589059.2


Basic Information

Item Value
RNA id XM_021589059.2
length 1460
RNA type mRNA
GC content 0.49
exon number 3
gene id LOC110508498
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7573853 ~ 7575614 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTACCGCAGGGTGGAGGTAGAGGCTAGTTGAGTTACCACAGGGGGGAGATAGAGGCTAGTTGTGCTTCTACATTAAGTGCCAAGGTGTACAGTAGGGTCTGGGGTTAGAGAATGTGCATTGGTGCAGGGTCCATGTCAGCAAATGTTCTATATTCAGACCTCTGGTGATAACATGTCCTATAGCTGCCATTCTCAGAATCATTTCAACCTGGACGATGACCACCACGCAGTCATCCAACAATATAGAAATCAGAATAGTGGGGCTTACTTATTTCAACCTGTTCAGAACACAAAACACATATTACCAGATGAGAGAAACAATAGACAGTCACACAGTCCTGGACAAAGAGAGGAGGCATATTGTGCGCTTTTACAGTAGAGCTGCATTGAGCAGGTGATACTGGAACTATCCTGGGGGGTGTACCGTAGGTGTGGTGGATAGATTATGCTTTACATAGGGAGAGACTGTTCCAGACTGGCAAAAACCctagagatgcagagagagctggagggagagagagaggggtggtggggtgcaGAACACACCCAGAGCCAGTGAACAGAATTTTTCATAACCAGGGGTGACTGGTGTGTCTGTGTTCCAGAGTGTAGaagaatataatagagaaagaTCAGGAGCTGAGAGAACACCCCCTGGTGTTGGTAGTGTTGATGTCACTATAGGAGGAGCTCTCTGGACAGGAGCTCTCTGTCCACTCACACCCAGTCCAACCCTGgtcttctcctcttcctttcctcctcaacTCCTCTGGGATTGACCTGACCCCTATTCCTCTCATCTCCCATTTCTATAATTTCTTCCTCCTGTCCTCCGTGTGGAGCAGTGCCACAGAGCCATGCACCCCCAGCGTCCTCTCCCCCAGGCCATGCCCTCCTCCCTCGGGCAGAACCTGCGTGACATGGCCATGGGCCTAGGCAGAGGGAAGAACTTCCTTGGTGGAAACATTGCCTACGGCTTCATCCAGTCCCTCAAGGAGTGCCTCTACTTCGTACTCTGCTGCTGGTGCATCAAGGAGatactggactgactgactgagacaccacgagagggagagaggggcacgAGGCTAAGATGTTAAACACAGCATGTGAAGCAGTTGCCCATGATGCAGTTCTGTATTCCTGTCTGGAGGCTTGGGAAACTGATGTGCTGCCTTGTGTATCAGAGGATCTCTGTCATTCTCGGATCCTGAGTCAGTCGGTCTGGagacctgcagtgtgtgtgtgtgtgtgtgcgtgtgaagcATCGTCTTAACACCAATctgctgatcctagacctgtggaGAAACCAAACCTGTGAGGCAATGGACATGGCTTTTGATGCTGCTTAGGTCACATTTAATTCCAAGTTTTTAAAATTTCTGTACAGTCTTAATATGCAAGGAATAAACAATGTAATATCtgattttgtttgtgtgtgccaaCCAGAgtcaggtgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252034 lncRNA downstream 15217 7556343 ~ 7558636 (-) False LOC110508494
TU252032 lncRNA downstream 21001 7552182 ~ 7552852 (-) True G220866
TU252029 lncRNA downstream 21926 7549673 ~ 7551927 (-) False LOC110508481
TU252030 lncRNA downstream 21926 7549673 ~ 7551927 (-) True LOC110508481
TU252091 lncRNA downstream 38428 7535216 ~ 7535425 (-) True G220908
TU252106 lncRNA upstream 13913 7589527 ~ 7591887 (-) True G220922
TU252117 lncRNA upstream 53741 7629355 ~ 7630077 (-) True G220929
TU252118 lncRNA upstream 55438 7631052 ~ 7631372 (-) True G220930
TU252121 lncRNA upstream 58702 7634316 ~ 7634807 (-) True G220933
TU252122 lncRNA upstream 59835 7635449 ~ 7636122 (-) True G220934
XM_036967511.1 mRNA downstream 334 7554786 ~ 7573519 (-) False LOC110508494
XM_036967516.1 mRNA downstream 334 7554786 ~ 7573519 (-) False LOC110508494
XM_036967525.1 mRNA downstream 334 7554786 ~ 7573519 (-) False LOC110508494
XM_036967534.1 mRNA downstream 334 7554786 ~ 7573519 (-) False LOC110508494
XM_036967545.1 mRNA downstream 334 7554786 ~ 7573519 (-) False LOC110508494
XM_036967574.1 mRNA upstream 1394 7577008 ~ 7606615 (-) False LOC110520788
XM_036967579.1 mRNA upstream 1394 7577008 ~ 7617184 (-) False LOC110520788
XM_036967584.1 mRNA upstream 1394 7577008 ~ 7617184 (-) False LOC110520788
XM_036967568.1 mRNA upstream 1394 7577008 ~ 7617193 (-) True LOC110520788
XM_036967618.1 mRNA upstream 168744 7744358 ~ 7840474 (-) False si:dkey-246i14.3
TU252035 other downstream 381 7558939 ~ 7573472 (-) True LOC110508494
TU252033 other downstream 15217 7556387 ~ 7558636 (-) False LOC110508494
TU252088 other downstream 43536 7528026 ~ 7530317 (-) True LOC110508472
TU252079 other downstream 49361 7517200 ~ 7524492 (-) False LOC110508454
TU252080 other downstream 49361 7517200 ~ 7524492 (-) True LOC110508454
TU253177 other upstream 773705 8349319 ~ 8350289 (-) True G221788
TU253206 other upstream 818747 8394361 ~ 8410809 (-) False G221806
TU253214 other upstream 927570 8503184 ~ 8523208 (-) True G221807
TU253420 other upstream 1187505 8763119 ~ 8763884 (-) True G221986
TU253443 other upstream 1229083 8804697 ~ 8817709 (-) False LOC110520835

Expression Profile