RNA id: XM_036967574.1


Basic Information

Item Value
RNA id XM_036967574.1
length 10302
RNA type mRNA
GC content 0.47
exon number 13
gene id LOC110520788
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7577008 ~ 7617193 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTCCCATGGAATACGTGGTTACCAAACAGGAATAAGGGGGAGGAGCCTTTTAGAGGGGAAACAGCCCATGATGTCTCTactatctccatccctctctccttcccctcctccatccattccgttgtccttcccctagtgtgtgtgtgagagagaaagggagagagcaatGCTCAGTGCACACGCATGCATATACTGTTAAATGATTTAGACTGCAAAGTgggagaggggaaaaggggaggagagggaaagggaaggagggagggaaagggaaggagggaaggaaatggaacgagagagggaaagggaaggaggggtgaGCGGATGAGACAGCAGCAGCgcatgagcaagagagagagagaggcggcatcacccagacagacaagacagagctGGAAGGAAAGCAAAGGGGAATGAGAGAGCGaagcaagaggaggagaggaagacaatgAAGGAGTGCCGCTGTTCAGCCCTGCCATTCTGCTGTTTCACATTCAACTGAGacggggaagagaggaagaggacaagctgaggagaggatagatggagaggATATGAGATCTGGCAATGACTTTGTGATTTAAacgagtggaagagaggagagagagagggtgtttaAACATGAATATGGTTCTGATGTGAATATGGAGCTCTGTTAATACCATGCTACGGATAATCACCTCTACTCTGTCTAACCCAAAATAAGGAACAATCGTTTTACATTTTTCATTCACTCTTGAAGCAAAGGAAGAGTTCTCAAGAATTTATTCACAActcaaagcaaaaaaataacattttttgtAGTAAAATAAACAATTATAGGTGGAAAAAAACCTGCTCTGCAGATTATTATACAATCACCACCTTTGTCGTTACTTACCTAACAGTTAGGACTGTACAGGAAAACATTCAGGTTGTTGTTATGCAATTTTTTTCTAAAGTGTTAGCTATTGTGATAGTAAAGTTTATTGATATTAATATTGACTATCATATATGAAAGTATTTCATCCTCTGAAGCAATATATGTTGTGTTAATCCATGTGTCCTAGCCAGAGTCTGGAATCAGCCAGGTTGGGATGTCAACATTGATTTGGTTTTATGGCCGGTGCGACGTGGGCCAAACTTTGATCATTTCCTGAGTGGTATTGATCCCTCCAGGAGTCTCTGGCTGGCCGACCGGCTGTGGTTTCTATAGTTAGATGTTAAAGGCCGTAATGGGTCAGTCTCAGCTCTGCTTAGCTGCTCCTGGGCTCTGATTTGTGGAAGCAGTCTGTTATCTCATTGTCTGAGATGTTTCTGCCGCTGTCAGGATTTCTCAATATAGATCCTGAGCAGGCTTCTCTTTTAATGTTTGTTGCCATGGCAACTTGCATCCGCTGcagtcagagacagactgagatgTAAAGTTATTTTGAGTCTTTTTCTCTTTTTTCAAATACTGGTGCTGTTCTTTCTATACTTTTCTGTCTAGGGTGGTGATAACCAGGAGAAACAGTCCAGACAGGACCGGGCTACTGGTGGGGTGGTGATAACCAGGAGAAACAGTCCAGACAGGACCATACTACTGGTGGGGTGGTGATAACCAGGAGAAACAGTCCAGGCAGGACCAGACTACTGGTGGGGTGGTGATAACCAGGAGAAACAGTCCAGGCAGGACCAGACTACTGGTGGGGTGGTGTCAACCAGGAGAAACAGTCCAGGCAGGACCAGACTGCTGGTGGGGTGGTGACGACCCGGAGAAACAGTCCTGACAGGACCAGACTACTGGTGGGGTGGTGATGACCAGGAGAAACAGTCCAGACAGGACCAGACTACAGGTGGGGTGGTGATGACCAGGAGAAACAGTCCAGACAGGACCAGACTACAGGTGGGGTGGTGATGACCAGGAGAAACAGTCCAGACAGGACCAGACTACTGGTGGGGTGGTGATGACCAGGAGAAACAGTCCAGACAGGACCAGACTACAGGTGGGGTGGTGATGACCAGGAGAAACAGTCTAGACTACTGGTGGGGTGTTAGTGTGTTGAACCTCTAACCTATTTATGTAAATGTAGGCTCTGTCTAGAATTCTAGACTGAATTTGATGCAGTGTTCTTGCTGGTTTGCCATGAGGTatatctctcgttctctctcttcaaCGTCTGCCGTGCCATCTTTGCTGGTAACTAGCGTCCTGACCGGAACAGGTGGTATACCAAGCCGATGTCAGAAATGACTAGTCTGGATTATAATCAGATAATTCTACATGTGGACATATCATTCACTTTGTACAGCTGTGGAACTGTGTAGTCTTAACTGGTATAATCAGctgtgttgtttatgtgttaGTGTAGTGGTGACTTTCTctacttgttgtgtgtgttttctatctGTGTGTAGGAGAATCAGGAAATCTTTTCAGGTAGAGGGCGCTATACTCAGCACTCATCTGACCTACACTGTGTTTTATTCTGTGCACTAACATCTGGCAGGGCGAGGGTTAAACCTGCTGTACTAGCATTTACTAGTGTTAACCTATGTTTGCTAACTGACCCGTTGGCTATGTTTGTGACATCTCGTCACTGTTAGCGACTGGTTCTGTCTGTTGCTAGCGTTGCGTTGCTAGCGTTGCATTGCGTTCAATTGTGAAACGCTAGCAACTCTATACGTTCATCTGTGTTGAcatttatattttagtcatttagcagacactcttttcCAGAGCGACTTAGAGTTGTGAGTGCATACTTgttcgtactggtcccccataggaatcgaacccacaactctgGCGTTGCAAGCCTAATGCTCCACCAGGTGAGCCACACGGGACACGTTGTCTACAGCCACTAATTGGCCGTCGCGATCTGACCATCTAGCCTGCATTTAGTATTCCACTGGTAGTGCTACAGCACTAGGACAAATAGACATTTAGAGCATAGACTATAATGGAAGACTTTTGTAGTTATGCGAAGACAGTTAGGCTGTGCTAAGAGCCTGCCGTAGGCTGCCGTAAGACCTTAATAGCCCTTCATAGCCCCTACATAGCACTTCATAGCTAATCCCAGTCTGATGTGTTCTGGTGCTCTCTGTCTGGGAGGAGACGTTAGCTAGTTATATTCCAGGTTCAACCTCCACTATTCAGTCCTGTGAGCTGACAAGCCCCTGGAGTTATATTCCTGGTTCAACCTCCACTATTCAGTCCTGTGAGCTGTGTCTTGTGGCTGGAGACTGTTCATGTTAGACATCTTTAGTTTTCTCTTTGGATGGACTATGCAGATTGTTCGGACTGTAGTTAGCTCAGTGTTTCTAGTTAGGCTAGTACTGTATCGTGCTGTGCTGTGTCAAGAAATACACATGCTTCTCTCAGGTAACTGACTATTGGCGTGGCTTGTTTAAACAAGACTGTTTCTGTGGAAtcgataaggagagagagagaggggagggaggtttAATTAAGTGTAATGACTGGGTGATGGAGTTCTCTAACAAGCCTCCAGTACCATTCAGGTCTCATTATCATCAAAACAATCCCACCGATGGTGTCATCAGCCAATGACCTACATTCTCTCTTGTTACATCACCactgtgtgtgtcactgtttctGTAACCAGAAAGAGGCAACTTCTCCAACTCTAGCACTTCTGATGCTATGGTGCTCCAGAACGTATCCACTCTAACCAGGGCAGCAATGTTCTAGAACAGCTCTACCTACGGTTTTAGCCATATCAGAAACTTCAGTCAGGGACAAGCCCAGCATCTGGTGCTTTCTTATCTATCAGTCGTTTCTTATCTAGTGGTGTCTGTTACTAGGTTATGTGCATTGTATAGACTCTGGCTGTAGTTACAGAGTgagtgtggagagagacagacaatctTTGAAGTAGAGGGACTGTTTAAGAGGACAGTCTGGAGAACGGGAAAGGAGacgagggagggggggagggggagcgagagatcaTTTGGAAGAGAAGGCAGGAAGTGGtggagcgagagaaggaggaagTGCAGCGGCTACTGAGGGAGGCACAGAAAacagtgtggaggaggagagagggattccaggagaggataggagaggacaagctgaggggagagagaagcgcagagagcgggagagagactgCACAGGAGGTGatctggaggaagagagaggaagagggggagaaagcCAAGGCCATCCAGAGAGGACACGAGACCatctggaggaagagagagagggagtgaggaaaagggagagggagtGTGTAAggaagagggagtgaaagagtACAGAGGAGGAAGAGTTAAATTACTTAGGAGCATTCTCCAGCAGCCTTGGAACCTGAAAAACAAAGCTGCtcacaggagagaaagagggataaagagagagagagaggaataaaaagcaggagggatagagagattttCCCTGCCAGAATTGGTGTCTGGCCATAGATCAGCAGGTCTTAACAGAACTTTGCTATATTAAACTCTGCAGATAATCTTACTCTGTTGTAtcaacccgtgtgtgtgtgtgtgtgtgtgtcccttctgATCTACTCGTTGGCAGCTGATAGGGATTTTATGGGCCCGTGTCAGGCAAGAGAGGCTAGTGAGCTACTGTCCTGACAGACACGCtgaaacgcgcacacacacacaccacagactcACACACTCTGTGCCATTTACAGGCAGTAGAGTAGGTTTCTACTCCAACACATGCTAACAGACACATGAGGGTAGGCCCCTTGATTGAGTAACTCATACCACCTGAGTTTCTGTGTCAATAGACAATCACATTCTGAGGTTGTATGTGGAATCTCCATGGTGCTCAAAGATGAACAACTGGACTTAAGTGCCATGCTACATTAGTTGACATGCTGATGTGCTCAAACAGCATTTTTCAGAACAGGTGCTACATACTTGATCACAAAAATCCTTTTTGATTCTGTCTATTGGAAAGTGGCATTAATTTCTGTGGATTGAAAGTGATAACATGTTGTAAGACTGACAGCGAAGACACCAAACAACTGAGTATCACTCCATCAGTGTGCTGGGTTAGACTCTTAGAGTGATCCCCTCTGATCTTCAATCGCTCCTCTTGCTGCTCTCCTCTGTCTTGTAGATGGTGTTTCTTGCGCAGTGTCTGCTGCACTGCCTGACAATGACGGGAGGATATAAAACAGGGCGGACGGACAGACAACGGTCactgagagggaaagaaagacgAGCGAGTTTTTGAGCGAGCGACTGATaatacagagaaggagagaatgaacCACCGTTGTTGTTTAGACTGAATCACACCAGTGTGTGTGgacttgttagagaaacactgaaATAACATCAAACATCTCAGATCCATGATGGAGCTGGTCCCTAAAACTAAGTACACTCACTTCCGGAGTGAATCTCTCAGTTCGAATGACGATACCAACTCCAACCCTTTGTCCCTCCCCCCTTCCACCCCCGCaacccccctcacccctcctgggctaccctcctccctctcctcctcctctctcacacccatcctccccccttcctccccccgCCGGGCCGAGAACAGCCCCACCACGCTCTGTTCCTTCTTCCCCAGGATGGGAGCCCTTCGCCTGGGCATCTCTGCTACTCTACTCCCAGGCCTCAAGGTCTCCATTAGGCCTCAGCGGGCTCAAGCCCCCATGGGGTCTTCAGGGGGTAACAGTTCCAGCTCTCCCACTCCTCACCCCCCTCCTTGTCTAAcagccccctctcccccccaTCGCCCCCCTCTGCAGGATATGAACCGGCTGGGTGGGGCGTCCAGGAGGGCGCGGGTGGAGGGGGGGCAGCTGGGGGGAGATGAGTGGACGCGCCACGGCTCCTTCGTCAACAAGCCCACCAGAGGATGGCTACACTCAGACCATGTGGTCAGCACCACTGGGGTCGCCTACTCAGTACGGTATATGGGCTGTGTGGAGGTGCTACAGTCTATGAGGGCGCTGGACTTCAACACCAGAACTCAGGTCACCAGAGAGGCTATCTCAGTGGTGTGTGAGGCAGTGCCTGGAGCCAAAGGAGCCCAACGCAAGAGAAAGccGTCGTCTCGCTGTATGACGTCCATTCTGGGGAAACGTAACCTGCAGTTTGCTGGGATGACCATCAGCCTGACGGTCTCTACCAGCAGCCTCAACCTGCTGGCCTCCGACTGCAaacagaTAATTGCAAATCATCACATGCAGTCCATCTCTTTCGCTTCTGGAGGAGACCCAgACACAGCAGAGTATGTAGCATACGTGGCCAAAGACCCAGTCAACCAGAGAGCGTGTCATATCCTGGAGTGTTCGGAGGGCTTGGCCCAGGAAGTCATCAGTACCATAGGGCAGGCCTTCGAACTACGCTTCAAACAGTACCTGAAGAACCCCCCCAAACTGGTCACCCCCcatgacagGATGGCTCCGTTTGATGGCTCAGcgtgggaggaagaggaagatgagggaGCACCGCCCCCTGCAGATGTTCCGTACTATAATAACTTCCCCGGGAAACAACCTCCTCCTGGGGGACTGGTGGACATGAGGGCCCGCCCTGGGGCTACGCTGCCCTATGGACAGCCGGGCCAGAATGATATTCACAAGCAGCCGCTTCCCCCTCTACCAATGGGAGCAAAGGAGGGAGGGCGGGACCTGTGTGATGACCCCTCATACGTCAATGTGGATAAACCCCGCCCCGCAACAgctgcagccaatggcaatgctCACAGAGATGCGTTCGACATGAaGCCGTTTGATGATTCCCTGGGTGTATCAGGTCTGGGGGTCTCAGCGGCGCCCCCTCTGGTGGAACAGCTGCAGTGCGAGGCCTGGTTCCACGGCAGCCTGAGTCGCAGGCAGGCTGAGAGACTGCTGACCCGTGACGGAGACTTCCTGGTTCGAGAGTCAGGCACCACCCCTGGACAGTACGTCCTCACTGGACAACAGGGGGGTCAGCCCAAACACCTACTACTGGTCGACCCAGAGGGAGTGGTACGTACCAAAGACCACCACTTTGAGAGTGTGAGCCACCTGATCAGTTACCACATGGACAACAGACTGCCCATCGTATCAGCAGGCAGTGAGGTGTGTCTGCAACAACCAGTGGAGCACGgggcctgaacacacacacacacagcaatgcaacacacacacactctcagaaaCACTACACACATAAGCAGTGCTGACAACATTAAGGAAAGCCAAAAAAACACCTCTATCACTCTTTCTGCCAAAATCATTTGCTCTCTGCTTTTCCTcacacccttctctcctcctggACGACTCACTGTTACCTCAGTGATCCCTACTTCTGTTCATCCTTCCGTCATCGAGgtccactccctccatccctccaaagAACGTGGGAGTAACACCTAGGAACATTTTATTTTCCTTCTCATTGGGACAGAAATTAATACAATTTAGTAAAAAAACTGAGCATTATTAATTAAATCATGCCATTGTATCATTTCTGAATGATTCTATCATAGTAAAAGAGGACTATGCACCTTGGAGGGGAGGAGTGAAACGTAGAgaaaggaatggagggatggggggagaggtCTTGATCCAGACATGGCAGAGGAAACAGTTTCTCTCACCGTCACAGAAGCACTCCAAAGACTTGTCTGATGATTGGACTCATCAGAGAGCCAATCAAATATCAGTGGAACACAGGAACAGCCAATCAAATATCAGTGGAACACAGGAACAGCCAATCAAATATCAGTGGAACACATGAATAACCAATCATGACTGAGATCAGGCCTCCTGTTAATATGCATTGACATTTTTGTGTCCACACCAATCAGGGCCCTCGCTTACCATCAAGCCACTTCCATTAAAATACCTTTCATCTTTGACCATTGACCCTGAGTGATACCTGGTGATATCACGGTCTCTGTATGCAAAAAGGGGGTTGCTATACCAACAAccattgtctctgtctgtccaaaTATGGACAAGGTTTCTTTCCGGCCTCTGAAGGTGGAGTTTGATAAAAGGATGTCCGACatccgcctgtctgtctgcatgggactggtctccctgtctgtctgcatgggactggtctccctgtctgtctgcatgggaCTGGTCTTACCTTTCTGTCCTGATCATGACAAAGAAAGTGGACTTGGTTGGACTGGGGCGGCAGAAACCATGGAGATGACTCCTACACCAACATACAGTGTGCTAGTCTGTCTGTCATGTACTTTCATTGGGAGAATAGTGTCTTTACatagagagggatgtagagaagACTGGGAAGGGGCAGGAGGCCGGGGGGAGGTTCCACATCTAGAGATGTCATCAGACCTAGACACGATGTCATCTGAAAGAGTTCAAAACCAATTCTAGGACGATGTCACAGTCAACCCAAATGCGACTGTCACAATTTAATCGGTGCTGTGTTGGAATCGTAGTTCGGATTAATGCCAATATTTTCTTGCTTTTCAATGGATTTGTTGTTAATATCTGCTTGCCTTGACAATCTATGGCCATGTCTCTGTCTGGAtgggtggggggtggaggggttgGGGGGCATACTGGATGAAGTGTGTTTAATGCCGAAAGCGTTCGGTCCAGAGCATTCAAAGCATAGATTTTATCTCCTCTCCAAATGTGCTGCAACACTTGGTCAGGAGATTAGcttttagcgttagcattagcgtaaGCATTAGTGTGTGATGATTCTTCTCAGTTCACTGCAGGGAAAACTGTGTTATCAGCACTGTTCACAACAAAATCTGGGAGCTTCGCGAACGTTGGTCAGATGTTGGACTTTGACGTGTTGTTTTCCTTGGAATTAGAAGATAGTAGAGGGAGAGAACGTGGAGGaatcatcctctccctccttctcttcatgATATGTTTTGTATCTTTTACTCGTGCCTTGTTTCTTCGATGCAGTCACCTCACTCCAGTGCAGCCTGTCACCTAATGTACTGTGCTTATTGTACAGTCAGTTGATGTACTTAATCCAAATGTAGTGGACTGTTGGATCCTGTCACATGGTCTCTCAGTCCATCAAAGACTCTGCAAAAAGGACACTGACTCTCACCACCCAGGTCCAGTGATGCCAATCCGCTCCTCTATTGCACATTCATTCTTACTTCCTGTTGTCACGGTTGCTTGATGTCGCAGCTCTCATTGGAAGGATTTCCACTCCACCTGTAAATAACATCAGATCTGATTGGTTGGTTTGAGTTATTTGTTCTGAAATGAAAGTCTTTATTGTTTAGATGTTATTAATAACATGGGTGGGACAGAACCAGATACTGTATTTCACATGTAATACCCACGGAAAACTTTTCTCTCTGAATCCAATTCATTTTGATTCTAGCCAATGAACCATGTCCAGGTTTTTGAGGGAGGCTGAAACCAAACTGTAAATGTGGAAGTGAAGAGTAACCTGGGATCTGCCACCTGCTGTACAAAATATTTCTGTCTCATcagtagggttgcaaaatcctgtggttttccagaaatcctggttggaggattcacGGAATTCCTGTTTATTCGCTCGTGTAATTCTAGGATTATtttaaccaggatttctggaaaaccggggaatttggggaaagttatcTGAATTTTGCAACTCTAGTCATGAGAAAGGGCTCTCTGAACCCGGACAGGTAATTGTTTTATTCATCTTTCTCatcgtgcttgtgtgtgtgttgtgagagaGGATGTGTGGATGATCAGAGTTTATGGTTGGGAGTGTAGGGGGTTGTGTAGTTCTTACATGGTGGCACTTGTGCTCTGTGTGTGAGGCCTTTGCTTCATTCTGTCACAAACACACAGGAAGGACAGCTGTGttagacacagactgtttaagtgACTATAGGTCCTGGATAGGCAACAAGAAAACAAGTATGCAAGCCCCAAGGTGTGTGTGTAAAAGGAATCATCTATCCTCTACATAATTTGTGAAACATTCTAGCGTTGTCATTGTTCATCACAGTTGCCTTTGTTGCATGGAAATCATTGTTTTTACACTTTCTATATTGTTGTTTTGATGTACTTTTTAATTTGAGTTTTGAAAGCCAAAGGGTTATTTTCAATTAGCCTTCACAAATATTGATTTAATTTTGTACTTTTTACAGTTCTGTTGTAATGCTCTTGTTCTTTTGGGGGGGAAATACATCTGTTTACACCTGTACCTGAAATCACAGATTGCATATAAATGCATATGTCATGAATCTTTCTTGGTGAGTTTGGCTTTAAAATGCAGTTTCTGGATTTACACTTTGGTCTCCTGTGATGTGTTTTCTTAAATGTTGATTCATAACTATTAAATAGAACATATCCCCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252034 lncRNA downstream 18372 7556343 ~ 7558636 (-) False LOC110508494
TU252032 lncRNA downstream 24156 7552182 ~ 7552852 (-) True G220866
TU252029 lncRNA downstream 25081 7549673 ~ 7551927 (-) False LOC110508481
TU252030 lncRNA downstream 25081 7549673 ~ 7551927 (-) True LOC110508481
TU252091 lncRNA downstream 41583 7535216 ~ 7535425 (-) True G220908
TU252117 lncRNA upstream 22740 7629355 ~ 7630077 (-) True G220929
TU252118 lncRNA upstream 24437 7631052 ~ 7631372 (-) True G220930
TU252121 lncRNA upstream 27701 7634316 ~ 7634807 (-) True G220933
TU252122 lncRNA upstream 28834 7635449 ~ 7636122 (-) True G220934
TU252126 lncRNA upstream 36797 7643412 ~ 7643660 (-) True G220938
XM_021589059.2 mRNA downstream 1394 7573853 ~ 7575614 (-) True LOC110508498
XM_036967534.1 mRNA downstream 3489 7554786 ~ 7573519 (-) False LOC110508494
XM_036967618.1 mRNA upstream 137743 7744358 ~ 7840474 (-) False si:dkey-246i14.3
XM_036967597.1 mRNA upstream 139622 7746237 ~ 7840473 (-) False si:dkey-246i14.3
XM_036967607.1 mRNA upstream 139622 7746237 ~ 7840475 (-) False si:dkey-246i14.3
XM_036967678.1 mRNA upstream 607977 8214592 ~ 8243743 (-) False LOC110520794
XM_036967789.1 mRNA upstream 860321 8466936 ~ 8494991 (-) False LOC110520844
TU252035 other downstream 3536 7558939 ~ 7573472 (-) True LOC110508494
TU252033 other downstream 18372 7556387 ~ 7558636 (-) False LOC110508494
TU252088 other downstream 46691 7528026 ~ 7530317 (-) True LOC110508472
TU252079 other downstream 52516 7517200 ~ 7524492 (-) False LOC110508454
TU253177 other upstream 742704 8349319 ~ 8350289 (-) True G221788
TU253206 other upstream 787746 8394361 ~ 8410809 (-) False G221806
TU253214 other upstream 896569 8503184 ~ 8523208 (-) True G221807
TU253420 other upstream 1156504 8763119 ~ 8763884 (-) True G221986
TU253443 other upstream 1198082 8804697 ~ 8817709 (-) False LOC110520835

Expression Profile