RNA id: XM_021589071.2


Basic Information

Item Value
RNA id XM_021589071.2
length 2100
RNA type mRNA
GC content 0.54
exon number 10
gene id LOC110508507
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7618368 ~ 7627967 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTACAGCTCATTGGCTTTTTGGATTCAGAGATGGCACTTTATTGCTCCTGATTGGCTCGCCAGAGCCACCCAGTGTTTGAAGGGCATGCAGTTTGTCGGCTAATACATAACGAGGACGTATGCGACTTTAGGtTGGTTCTCTTCCCCCACTCTTTCTGTCTCAGGTCTGGATGCTGCAGGCTGTGTCCAGGCTGAGTAGAGCAGCGGTGCATGTGAGGAGAGTGGCCGCCCAGGTCCAGGTCACCACTGTAACCATGGCCCAGAATCACCAGAGCTGCGGTACCTCCTGTCAACAGAATGGGGGTGCTGTCACAGCAGCCATCCTCATCATCGGGGACGAGATACTCAAGgGTCACACGGTGGACACTAACAGCGCCTTCCTGTTGCGAGCTCTGAGGAAGCTGGGAGTGTGTGTCCAGCGTGTCACAGTAATCCCAGACCAGCAGGAGGTCATCTCTAAGGAGGTGGCCCTCCTGGCCCCACAGTACACACACCTGCTCACCTCTGGGGGAATAGGCCCCACCCACGACGACGTCACCTTCGAGGGTGTTGCCATGGCGTTCGAGGAGGAACTGCATGCCCACCCGGAGCTGACCCGTTTGGTGGAGGAGTTCTTTGGGGTGGTGGATAGGGAGAATGCAGCCATGAAGCTAGCCATGGTCCCCCGCTCGGCCAAGCTCAACTACGGCACTGACCCTCAGACTGGACAGCCACTACGCTACCCACTGGTGAGTGTGCGTAACGTCTACATCTTCCCTGGGATCCCGTCTCTGTTGGAGAGAGCCTTCAACGGTCTGGAGCACCTGTTCGCTGGCTCAGGGACCACCTTCCACACACGAGAGGTGTTTGTGGATGCAGACGAGGCGTTGATCGCCCCGGTGCTGACCCGCCTGCAGGCGGGCTGGGGGAAGAGGGTGGCTCTGGGCTCCTACCCTGACTGGCTCAGTAACTACCACCGGGTCAGGCTGGTGCTGGATTCAGACAGCtctgaggaggtggagaaggcCCGGGCTCAGCTGCTCGAGGAGATGCCCAAAGGCAGTGTGGTTCCCCTGGTCACGGACCCTGTGTCCATCGCTACTGAGGAGGTCTACACACTGGCCaacagcgGCACGCCGCTGGGTGATAAAGTGGCAAACGCTCTGAAGACCATAGAGTCTGCTCTGGATCAGTATTCGGCAGGGGAGATCTGTGTGGGCTTCAATGGAGGCAAAGACTGCACTGCTCTACTACATCTATATTACGCTGCACTGaaacgGCGGTATCCGGAGGGTAAGGACAAGGTAAAGGCTCTGTACATTCGCATCGTCTCTCCCTTcccagagatggagagattcCTCCAGGACACAATAAAGAGGTATGACCTGGAGATTTTCTCAGTGGAGGGCAGTATTCGGCAGGCATTGagtgaggtacaggagaggaggcCGGAGCTGAGAGCTGTGTGTATGGGCACCAGGAGGAGTGACccctactcacacacactcacacccatgTGTCTCACTGACCCTGGATGGCCGGACTACATGAGGGTCAACCCCCTGCTGgACTGGACGTATCATGATATCTGGTCATTCCTGAGGACTCTATATGTGCCCTACTGTATTCTGTATGATAAAGGGTACACCTCATTGGGCAGCATGGACAACACATGCCGAAACCCCGCCCTCCAAGTGGTGGATGGGAGGGGCGTGAGCCGCTATAGACCTGCCCACCACTTGGAGAATGAGGAAATGGAGCGCGACTCACGTGAATGATGTCACTTCCTTGTTTGTAACGTCATGTCCTGATCTTTTATCCGCCCTTCCTGTTTGGGGCTCCAGGTAAGAGATGCTTGTAGggacagacctaggatcagcatATCCTCCTCAAAtcccaaccttaaccattagaggaAGGAAgtggagagtgaaagaaagagggaaCAGATTGAGGAAAGTGGAACAGACAAAGAACCAGAGACTGATCGCAGAATGAGTGAATTTTGAAGGAAAAGTGTGTATTTCTGAATGGAAAACATGTGCCTGAGTGTATGTCTGAGTGGCTTAGAATCTAAAGATATGGATTTACATGGTTTGTAATAAAATATCAATCTGTCA

Function

GO: NA

KEGG:

id description
K00953 FLAD1; FAD synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251695 lncRNA upstream 1311 7616917 ~ 7617057 (+) True G220576
TU251694 lncRNA upstream 3576 7613663 ~ 7614792 (+) True G220575
TU251669 lncRNA upstream 12849 7600401 ~ 7605519 (+) True G220552
TU251665 lncRNA upstream 38034 7577070 ~ 7580334 (+) True G220549
TU251682 lncRNA upstream 44137 7573889 ~ 7574231 (+) True G220565
TU251699 lncRNA downstream 1297 7629264 ~ 7630255 (+) True G220578
TU251703 lncRNA downstream 5951 7633918 ~ 7634120 (+) True G220582
TU251702 lncRNA downstream 7520 7635487 ~ 7636196 (+) True G220581
TU251708 lncRNA downstream 13674 7641641 ~ 7642008 (+) True G220587
TU251709 lncRNA downstream 14161 7642128 ~ 7642584 (+) True G220588
XM_036967459.1 mRNA upstream 117831 7460440 ~ 7500537 (+) True LOC110508431
XM_036967452.1 mRNA upstream 170486 7437011 ~ 7447882 (+) False LOC118945274
XM_021621564.2 mRNA upstream 260960 7348131 ~ 7357408 (+) False LOC110536044
XM_036967633.1 mRNA downstream 313335 7941302 ~ 8086452 (+) True LOC110513974
XM_036967642.1 mRNA downstream 520440 8148407 ~ 8159396 (+) True efna1b
XM_036967655.1 mRNA downstream 542667 8170634 ~ 8176258 (+) False LOC110520790
XM_021598321.2 mRNA downstream 617261 8245228 ~ 8249653 (+) False LOC110520877
XM_021598322.2 mRNA downstream 617261 8245228 ~ 8249653 (+) True LOC110520877
TU251574 other upstream 170491 7446369 ~ 7447877 (+) True LOC118945274
TU251531 other upstream 236805 7378258 ~ 7381563 (+) False G220445
TU251520 other upstream 253083 7363298 ~ 7365285 (+) False G220435
TU251521 other upstream 253083 7363298 ~ 7365285 (+) True G220435
TU251514 other upstream 253922 7363298 ~ 7364446 (+) False G220435
TU252485 other downstream 542740 8170707 ~ 8172223 (+) False LOC110520790
TU252560 other downstream 771104 8399071 ~ 8489067 (+) False G221299
TU252562 other downstream 771104 8399071 ~ 8489067 (+) False G221299
TU252563 other downstream 771104 8399071 ~ 8411530 (+) True G221299
TU252829 other downstream 1101010 8728977 ~ 8732478 (+) False G221514

Expression Profile