RNA id: XM_036967618.1


Basic Information

Item Value
RNA id XM_036967618.1
length 2341
RNA type mRNA
GC content 0.41
exon number 5
gene id si:dkey-246i14.3
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7744358 ~ 7840475 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCTCCTAACCCAAATCACAGCGCTCCAGACAGGACCCACTGACACCTATCAACTGATTTCAACTCTAATTCGGAAAACGCTGATATTTTAACCTAGCATACTCATAGTTCAGCAGGTGATTATCAACAACTTGCAAGTTAACTTTAGGCATATACTCGGTAAGTTAGTGTACTTTTAAAAGTGTATTTTTGACATAAGGAAATAAGTTGTGCCGCAGCAGAATAAAGGAGGCTATCCTTTTCAGTATCAGGCAGCAACTTTACCAAACTATCTGACTTTGTGTTCAGCTTTTGAGGAGTCTCTCCATCGTTTGACTTTATTCACCATGCAACAACGGCTTCCACATAGGATGTACCCCGAAAGGAAGGTATTTTGGTGACTTAGTTTGAGAACGTTTGAACGGGAATATTGCGTCAATAAAGGTGATTCTACTCTGCGTTAACCGGGGCCACTAGTTCTACCTGTCACGGAATTCTTTCAACCAACCACTCCCACCCGGTCCCCTCGTGCTGTCTTTCCGTGGGTCGCCTGCCTCGCCCGCTAACCGTGATGGCGTGCGGTTGGAGTCCGGGAGCTGTCACGGTTTGGAGAACTACCGTTTTCCTGCTCAACATCGCGTGCACAGCGTCGGCCAAGAGACACGTCGTCTACTGGAACTCCACCAACACTAGTTTGACGGGAGGGGATCTGTCCATCCAGGTGAATCTGAATGACTACCTGGATATTTACTGCCCCCACTACCCTCACCCGTCTCCCCCCAGTGAGGTCTACCCCCAGGTCCCACCAGACAGCCTGGCCCTGTACCTGGTGGCTGAGGGGGGGTTCAGGGGCTGTGTGGAGACCCAAGGGGCCATCAAGAGATGGGAGTGTAACAGCCCCCATGCCCCCTTAGGCCCTGTCCGCTTCTCAGAGAAGATCCAGCGCTTCACCCCCTTCTCTCTGGGCTTCGAGTTCCTCCCCggacaccactactactacagctcattGCCTACAGGGGAAAGCTCACCGCTGCCCTGCATGAAGCTGCGAGTCACAGTGTGCTGTGAGCCCACAACCGTAGGGTCCAAGCAGAATAAGCAGGAACAAGGCAATCAAAAAGAATTGTGGGGAACACACTGAGGGTACCGCCTCACTTCACCTCACACGCTCCGAACCACATCGGCTGATTGACAGATGCTCCTCACCAACCAGGTGTGTAGGTACAGTATTTAGACTGTCTGCTGAGCACTTAACCAGGTGAGGACCTCTACCAATGAGAAGAGGCCAAAGCTGGTGTTTGTTTGAATAGAGGTTTTTGTTTTAGTGCAGTAAAGATTCTGCTTTAGGTGTTTCAGTTAAATGTTGATGTTTTGTAGAGGTCCTGTAATGTTGGCATCCATTTTGATTATTTGAAACATcctgatttttatttttacatggcTGAACTTTTTTTATACAAATGTTTACAGGTCTAGATTTAGATTGCTGTTGTTTATAGTGCTATCAAGAATAACTAAAGCACTTTAGTACAGGTTACCCTGTATTTTTCTTTCAGTTATAAAACATACATTTTCATCATCTTTTCCTTAAACAAATAGCATTAAATGCCATTTTATTATCAAAgcaatttaaatgaattcattTTATTTTGATTGTTTCATATATTTTATCTGTTTGTTAGATATGACATTTTTGAATTTATTACTTCAATGCAATTTCATGTTCCAATCACAAAAGTAATATATCACTAAAGTTAATTTACAGTAGAAGTGTTACAAAAATATCACCAACCTAGCAAACATGCATGTTTTCTTTTCAAAAGTGAAACTGAAATTATTAACTGaaattatttttattaatttaatcCCACAAAAAATAGTGTATATTTAATTAAATTCATAATTCTGATTCGTTTCTTACCTTAATCCAACATCATTCTTAAATACAGGCTTTTCTGGGCTGCAGTTTTTCCCACATTCTAATGTTGTCTTTGGTCACAGCATTTAGAAAAACAATGTTTTCTTTCAGAATAAATATGTTGACTATTAGTTATTCCTGTAAGCACTTACTCAGAGAGATGAGTCTGTAGTATTACTTTACACACACATTTGGATAACAATATGCTTCAATGACAGTTAAATATTTTGTTCTAGTCTACGCAGGTTATTCAGGAATGTAATGATTATTCCAGGGGTTTAAACACTGATGTCTGGAACCTTGTTGTATAAAGTTGGAGCTCCCAGATGTAGTTTTTTTGTTTTCACATTTTAGTGAAGTATGAAACATCTTCTATGAAGAGCGAACTGCAAACAGCCCTTTTATACAAGGTGAGATGACAAAATAAAGATGATTGCAATAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252145 lncRNA downstream 3082 7674705 ~ 7741276 (-) True G220956
TU252136 lncRNA downstream 88040 7656057 ~ 7656318 (-) True G220948
TU252130 lncRNA downstream 95286 7648746 ~ 7649072 (-) True G220942
TU252129 lncRNA downstream 97037 7646982 ~ 7647321 (-) True G220941
TU252128 lncRNA downstream 98044 7646029 ~ 7646314 (-) True G220940
TU252273 lncRNA upstream 8397 7848871 ~ 7849072 (-) True G221073
TU252276 lncRNA upstream 9779 7850253 ~ 7850460 (-) True G221076
TU252286 lncRNA upstream 21957 7862431 ~ 7862680 (-) True G221086
TU252289 lncRNA upstream 29762 7870236 ~ 7870515 (-) True G221089
TU252291 lncRNA upstream 31477 7871951 ~ 7872157 (-) True G221091
XM_036967568.1 mRNA downstream 127165 7577008 ~ 7617193 (-) True LOC110520788
XM_036967579.1 mRNA downstream 127174 7577008 ~ 7617184 (-) False LOC110520788
XM_036967584.1 mRNA downstream 127174 7577008 ~ 7617184 (-) False LOC110520788
XM_036967574.1 mRNA downstream 137743 7577008 ~ 7606615 (-) False LOC110520788
XM_021589059.2 mRNA downstream 168744 7573853 ~ 7575614 (-) True LOC110508498
XM_036967678.1 mRNA upstream 374118 8214592 ~ 8243743 (-) False LOC110520794
XM_036967789.1 mRNA upstream 626462 8466936 ~ 8494991 (-) False LOC110520844
XM_036967794.1 mRNA upstream 626462 8466936 ~ 8495390 (-) True LOC110520844
XM_036967868.1 mRNA upstream 858561 8699035 ~ 8702619 (-) False LOC110520892
XM_021598339.2 mRNA upstream 858561 8699035 ~ 8703263 (-) False LOC110520892
TU252035 other downstream 170886 7558939 ~ 7573472 (-) True LOC110508494
TU252033 other downstream 185722 7556387 ~ 7558636 (-) False LOC110508494
TU252088 other downstream 214041 7528026 ~ 7530317 (-) True LOC110508472
TU252079 other downstream 219866 7517200 ~ 7524492 (-) False LOC110508454
TU253177 other upstream 508845 8349319 ~ 8350289 (-) True G221788
TU253206 other upstream 553887 8394361 ~ 8410809 (-) False G221806
TU253214 other upstream 662710 8503184 ~ 8523208 (-) True G221807
TU253420 other upstream 922645 8763119 ~ 8763884 (-) True G221986
TU253443 other upstream 964223 8804697 ~ 8817709 (-) False LOC110520835

Expression Profile