RNA id: XM_036967633.1


Basic Information

Item Value
RNA id XM_036967633.1
length 3751
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC110513974
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7941302 ~ 8086452 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagaggagagagaagaggagaggaggagagggaaagagcgagaaCGAGAGACGAATGAGTATTTATGACGCGAGGATCGCAGGATGGATGGACAGACACTTAGAAAATGAAGAAACTCGTTGTTTGAAACTATTTGCTAGAGGGAGAATAAAAAAATGTTAATCTTACGGATTCTTCAAATGCGCATCAAGTAGGGATCTACGCCAAATGAAGAATTAACGTATTTTTCTATGTAAACTCAACATTTCCGAGTGAGAACGGTTCGTAGGCGATGCACGTTGTTAATGTGAATGGACTCGGTGTCTCTCTCCTTTTGTTAGCGCTGTTTTCATCAAATTAGCGCAGCCCATACTCCGCTGCACCCCCCTTGTCGGACGGCCAGCGGACAGCTAAGGACCCGCGTTCTATCTAGAAGAGAGACCGCTCTCCTGTGGTCGAAAGCCGGACCTCTCACCTCTCATTCCCCGCTATAAGAGAGGATCTTCTCGGTATGAAAGCTCCATAAACAGCTATTTTGTAGGGAACCCGTCTGGCAGGGAAGCAACAACAAATCCCCGTTTTCAGACTGTGATTTTTGGGGGACGCGGGCTCGCGTTATGGGGAGGGAGACCTCGCGTATCACAATGGAATTGGAGTTTGAGAACACGTCCCCAGTGCGTTAAGGAACGCAGCCTTATTCCGTTACACTACTGTATTTTACCTTCTCAACTGAAgtctttttttcttattttttttaaaactaccAAATCCGGGATGCCGCATTTCGTGGGGTGAAGGTTCCGAACGCGaggaaaagaaggagagagagagaagagagggaaggacggaggagaaagagagattcggagagcatggctcttgcaacgttgtctctctgtgtgctaACTCTCACCTGGGCAAACTTGTACCAGGTGTGTGCCAACAGGCACGCGGTGCATTGGAACAGCTCCAATATACATCTGCGTAGGGAGGGCTACACGGTGCAGGTGAATGTGAACGACTACCTGGACAtctactgtccccactacaatgACAGCCAGCGCGTGGTGGGCACCGGGGAGCAGTACATCCTCTACATGGTCAGCTACCGTGGTTACAGGACCTGTGACCCCCAGCTGGGCTTCAAGAGGTGGGAGTGTAACCGCCCCCACGCACCAATCAAATTCTCAGAGAAGTTCCAGCGCTACAGCGCCTTCTCCCTGGGCTACGAGTTCCACGTGGGTCAGGAGTATTACTACATCTCTACACCCACTCATCACCACGGTCGCAGCTGCCTCAGATTGAGAGTTTATGTCTGCTGCTCCACAGtgtctgatGTTAATGTAGAACCAGGACATCCAGAAACAGACTACACACTCAGACCAGACATCAAAATCCAGGACATCGaTGATTTTAACCCTGAGATTCCTAAATTGGAGAAGAGTGTCAGTGGAAGCAGTCCATCCAGGGATCGCCTACTCATCACCATAGCGACGCTCCTTCTCGCTGCCATCACCATATCCTAGCAACGGCCATCCCATCAGTGTCGCCATGCCAACCAGCCATGGGAGGGCTTGGGCAGGAGGGGTGAAGGATGACAAGGACTGAGGATTTGGGGGAAAGGGGACAGGAGATTAAGGGAACATGGAAAATAGGGAGTTAGAAGACTTCTGAATGACATTGGttgacaaggtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgctgctgctgctgcttagAAGACGACATTCACACAGAGTATGAAGAGAAGACCTTTTATGACTTTGGACATTGGGCCTGCATGTGTAGGTAtgtttcagagtgtgtgtgtctcaacaTGTGGTGAAGGTAGCCTGTTGAAACATGCACACTGCATACAGCATTTattagagaggagaagagcacCTGACTTTTTATTGGAGCAGCTGATCGCAATGAAACACAGTGACACTTTTTCATGCAATCTGATTGGCTGACACAGTTCTCTTCTTAGGGCTAGTTTCCTGTTTCTTGCTCCGGAGACTGAACTGATTGAACTTGACTGAAACTATCTGAATTATTGCCTTTTTGTTCTGCCAACTGGATTCAACCAGATCTAGTCTGGATCCCTTCTGTGGAACTGGATCTAGTGGTCCTCCTCCCATGTGATCTGGTCTGATCTGGACCGTAGCAGCCTAGTATGAAAGAGCCAGTCTGGGTCCAGGTTTCTGAACTGGGAAGTGGGACCATTCAGTCtaatatgagagagggagagagagctacagtaatGTATCAGAGTAGTAATATGTGTCAATACAATGACAGCTATAGGTTCTAGGTCAGTGGTTGTATACATTGTTATACACATTGACACAACCTCTGGCTCATCATTAAACCCCCTAGAGACATGTTTgtccttcattcattcattcctgGATAGCATTATCTCTGATCTCAGAGGTCAGAAAAGCACAGCAATACTGTCACCGAATGCATTGTATTTGGTTGTACACTGAggacctctcttcctctctcctggagTCGGATGGAATGGGACTACATACCACAGACTCCACATGCCAAACTCTTCTGTTTTATTTTACTGTACACACTAGAACtagaatcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtactgacaatGCACACggcaacatactgtacatgtcttAAGTTTAAGTAACTGAACAAACCAAGTGTATCTGAACATATAGACAACACTAAATAAACCTTGGGTTTAGGTTCTACATGCAAACCAAGTGTATCCGGGAGGACAGGAGAACAATGGGTTAAACTTTATCCTACAGTCCTCTGATTGACATGGTATTTTCCTTCCTAGTTTCTTTGGGATCATAGAAACAATCATTTTGGTAGTTACTCATTGTATAAGTACCAGAAAGTACATATTGTTGCCATTACATCTTAGTAAATACTAGGTTAATACTGTCTGAAAGAGGACTGTAAAATGAAGTGTACTGAACAACGTGAACAAACTGTACTAACCTGTTACCATGGTTCTTGACTAACTCTTTTCACTAGGAACTGTCACTTTGTGGGCCATGGTAACACCCTACCTTACTGCAATGTGTATAGGCAGTTTACTGTAGTAGGGCATGCATGGCTTACTGTAGTAGctctgaagatgatgatgatgaaggtatGGATGGCCTATCGGATACAGAGCTGACCTCTGACCTATAGAGGTCAAAGAGGTCGCACGTCTTGACACGTGTCACAGACATTCTAGAACTTTCACGCGTCGAGAATGGATTTTTCCGATGTCTTGAACTCTGACAGAATGAAATGTGATGTAAGCATTTTTACAAACTTGAAGCTCAATTTCCTTGTTCTGTTTGTATTTTTTAATTTGCTGTGGTGTATGTTGGGGCGCTGGGAAGGGGTAAACGTTGGGATAACTGGACTAGAGACATGCAGTACTGTATAGGACACGGAGTTCCACTAACGTGCTTTCAGATTTACCAATAAGCACCATGTTGCAACAAATGTTTCCAGACCGTCAAATTGGAATGATACTGTCATTGAAACGTGGTGCCAACATGAGGGACAGTTGGCTGAGATCagtatgtatacagtatgtatggctTTGGGGTGGGGGGTGAGATG

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252346 lncRNA upstream 6944 7930997 ~ 7934358 (+) True G221141
TU252277 lncRNA upstream 90450 7850638 ~ 7850852 (+) True G221077
TU251813 lncRNA upstream 133639 7807308 ~ 7807663 (+) True G220680
TU251811 lncRNA upstream 134159 7806721 ~ 7807143 (+) True G220679
TU251799 lncRNA upstream 155828 7784512 ~ 7785474 (+) True G220668
TU252365 lncRNA downstream 215 8086667 ~ 8087262 (+) True G221153
TU252467 lncRNA downstream 33177 8119629 ~ 8120076 (+) True G221242
TU252494 lncRNA downstream 76842 8163294 ~ 8164016 (+) True G221262
TU252486 lncRNA downstream 85511 8171963 ~ 8172223 (+) False LOC110520790
TU252489 lncRNA downstream 89265 8175717 ~ 8178058 (+) True LOC110520790
XM_021589071.2 mRNA upstream 313335 7618368 ~ 7627967 (+) True LOC110508507
XM_036967459.1 mRNA upstream 440765 7460440 ~ 7500537 (+) True LOC110508431
XM_036967452.1 mRNA upstream 493420 7437011 ~ 7447882 (+) False LOC118945274
XM_021621583.2 mRNA upstream 583894 7348131 ~ 7357408 (+) False LOC110536044
XM_036967642.1 mRNA downstream 61955 8148407 ~ 8159396 (+) True efna1b
XM_036967655.1 mRNA downstream 84182 8170634 ~ 8176258 (+) False LOC110520790
XM_021598321.2 mRNA downstream 158776 8245228 ~ 8249653 (+) False LOC110520877
XM_021598322.2 mRNA downstream 158776 8245228 ~ 8249653 (+) True LOC110520877
XM_021598324.2 mRNA downstream 163301 8249753 ~ 8254163 (+) True krtcap2
TU251574 other upstream 493425 7446369 ~ 7447877 (+) True LOC118945274
TU251531 other upstream 559739 7378258 ~ 7381563 (+) False G220445
TU251520 other upstream 576017 7363298 ~ 7365285 (+) False G220435
TU251521 other upstream 576017 7363298 ~ 7365285 (+) True G220435
TU251514 other upstream 576856 7363298 ~ 7364446 (+) False G220435
TU252485 other downstream 84255 8170707 ~ 8172223 (+) False LOC110520790
TU252560 other downstream 312619 8399071 ~ 8489067 (+) False G221299
TU252562 other downstream 312619 8399071 ~ 8489067 (+) False G221299
TU252563 other downstream 312619 8399071 ~ 8411530 (+) True G221299
TU252829 other downstream 642525 8728977 ~ 8732478 (+) False G221514

Expression Profile