RNA id: XM_036967655.1


Basic Information

Item Value
RNA id XM_036967655.1
length 1616
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC110520790
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8170634 ~ 8178058 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgcaacagaattggcGAAAGGAATACGCCCCTGATTACAAACACGGAACTACAGTGTCGTTAGAACGACGTCAACGTTGAGTCGCTGATGCAGATGTCAACTATTTGCACGATAGCTGATTTGATATTCATAGCGAAATTACTCACAATTTAGACACATACCTAGCTATCTAGGTAGTGCTCCACATATTCCCCTTTCCGATCTATGGAGTTTTTGCAGTTTCTATCATGGGCGTGCATCGTATTTACAGTCGGGATGTTCTCGACTGGACTgaCGGACCTGAAGAAGATGAGAGCTTCCAAAAGTGCAGATAACGTCCAgttcctccccttcctcaccaCATGCCTCAAtaacCTGGGCTGGCTGTATTATGGGATACTGAAGACGGATGGGACTCTGGTCCTGGTTAACACCATAGGAGCCTGTCTACAGTCCCTCTACATCCTCTCCTACTGCCACTACACCAATGACAAGAGGCGAGTGACCTCTCAGACATTACTAGCAGGAGGAGTGGTCTGTGGAGGCTGGCTGTACTTCAGTGTTGTCCTGCCTCAGGGAGAGTCTCAGCTGGCCCAGCTAGGTCTCACCTGCAGCCTGTTCACTATCAGCATGTACCTGAGTCCACTCGCTGACCTGaTGGAGATAGTGCGTACTGGTAGTGTGGAGCGTTTGTCCTTCTCTTTGACTGTAGCTACCTTCctcacctcaacatcctggaCGCTCTATGGACTACAGCTGCAAGACTACtatatcatgGTTCCAAACACGCCAGGCATTGTGACCAGTCTCATCCGGTTCTTCCTGTTCTGGAGATTTGCATCTGTCAATCAAGGCGTGCCATCCTATAAGCTCATCGAAATCTAAGTGGCTGGAGACTCACACCAATGGTTacaagggagagagaaaacaggcTTCTTGACCCTATCATGGTCAGGCTGTCAATCACTGATATTGTTACTCATATTGTAAGTGATTCATGATCACTCCTACCCACCAGGGGTTTAAGAACACTTTCTCCTCTCAAGGCAGAAGCTGTCCCTaatcacagatctaggatcagagtACCCTAGCAATGGGGGGATGAAAAATGATGAATAaatatctgaccctgtatcagtggttaGGGGCATCTTCCTCGTCTTTCTCCCTCCACCACTTCCTTTTTGTGCCTTCTGTACTAGTCTGGGACATCATTACTGAGAACTCAACCATGGGTGGGACAGTCCTGCCCTGTCAATCACAGCAGTCTCTGTTACCCAGTGGGAGGTTTTTTGCTCAGCATCAATGCGCTGCTATTGGTTGAATCGCTCTAACTAACAGGGCAGGATGATCCCGCCTCTAGTGGGGTTTGAGAACCCCTCACCTTTATAGTTGACTTGTCTGTCCTCATCACTATGGTACCCTGTGAACTAGGGGTGAACAACTGTTCCTGGTAGCCACAGTATCTGCTGGGTTGTTATCCTTCTCTTTTAACTAgacgtacagtgcatttggaaagttttcagactcctcgagtttttccacattttgttacgttattctaaaatgtattaaattgtttcttttcctcatcaatctacacacaatatcccataatgacaaagcaaagaggttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252494 lncRNA upstream 6618 8163294 ~ 8164016 (+) True G221262
TU252467 lncRNA upstream 50558 8119629 ~ 8120076 (+) True G221242
TU252365 lncRNA upstream 83372 8086667 ~ 8087262 (+) True G221153
TU252346 lncRNA upstream 236276 7930997 ~ 7934358 (+) True G221141
TU252277 lncRNA upstream 319782 7850638 ~ 7850852 (+) True G221077
TU252457 lncRNA downstream 35401 8211659 ~ 8214241 (+) True G221232
TU252575 lncRNA downstream 107375 8283633 ~ 8328759 (+) True G221306
TU252580 lncRNA downstream 137572 8313830 ~ 8314890 (+) False LOC118945294
TU252574 lncRNA downstream 150943 8327201 ~ 8328604 (+) True LOC118945294
TU252648 lncRNA downstream 240862 8417120 ~ 8417804 (+) True LOC110520859
XM_036967642.1 mRNA upstream 11238 8148407 ~ 8159396 (+) True efna1b
XM_036967633.1 mRNA upstream 84182 7941302 ~ 8086452 (+) True LOC110513974
XM_021589071.2 mRNA upstream 542667 7618368 ~ 7627967 (+) True LOC110508507
XM_036967459.1 mRNA upstream 670097 7460440 ~ 7500537 (+) True LOC110508431
XM_036967452.1 mRNA upstream 722752 7437011 ~ 7447882 (+) False LOC118945274
XM_021598321.2 mRNA downstream 68970 8245228 ~ 8249653 (+) False LOC110520877
XM_021598322.2 mRNA downstream 68970 8245228 ~ 8249653 (+) True LOC110520877
XM_021598324.2 mRNA downstream 73495 8249753 ~ 8254163 (+) True krtcap2
XM_021598333.2 mRNA downstream 88822 8265080 ~ 8266671 (+) False LOC110520886
XM_036967709.1 mRNA downstream 89023 8265281 ~ 8266671 (+) True LOC110520886
TU251574 other upstream 722757 7446369 ~ 7447877 (+) True LOC118945274
TU251531 other upstream 789071 7378258 ~ 7381563 (+) False G220445
TU251520 other upstream 805349 7363298 ~ 7365285 (+) False G220435
TU251521 other upstream 805349 7363298 ~ 7365285 (+) True G220435
TU251514 other upstream 806188 7363298 ~ 7364446 (+) False G220435
TU252560 other downstream 222813 8399071 ~ 8489067 (+) False G221299
TU252562 other downstream 222813 8399071 ~ 8489067 (+) False G221299
TU252563 other downstream 222813 8399071 ~ 8411530 (+) True G221299
TU252829 other downstream 552719 8728977 ~ 8732478 (+) False G221514
TU252831 other downstream 552719 8728977 ~ 8731107 (+) True G221514

Expression Profile