RNA id: TU252489


Basic Information

Item Value
RNA id TU252489
length 2316
lncRNA type sense_over
GC content 0.44
exon number 2
gene id LOC110520790
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8170634 ~ 8178058 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGGGGATGAAAAATGATGAATAaatatctgaccctgtatcagtggttaGGGGCATCTTCCTCGTCTTTCTCCCTCCACCACTTCCTTTTTGTGCCTTCTGTACTAGTCTGGGACATCATTACTGAGAACTCAACCATGGGTGGGACAGTCCTGCCCTGTCAATCACAGCAGTCTCTGTTACCCAGTGGGAGGTTTTTTGCTCAGCATCAATGCGCTGCTATTGGTTGAATCGCTCTAACTAACAGGGCAGGATGATCCCGCCTCTAGTGGGGTTTGAGAACCCCTCACCTTTATAGTTGACTTGTCTGTCCTCATCACTATGGTACCCTGTGAACTAGGGGTGAACAACTGTTCCTGGTAGCCACAGTATCTGCTGGGTTGTTATCCTTCTCTTTTAACTAgacgtacagtgcatttggaaagttttcagactcctcgagtttttccacattttgttacgttattctaaaatgtattaaattgtttcttttcctcatcaatctacacacaatatcccataatgacaaagcaaagaggtttaattgtttttattttgtacatttataaaatggaaatatcagatttacataattattcagaccctttactcagtactttgttgaagcacctttggtagcgattacagcctcgagtcttcttgggtatgacactacgagcttggcacatctgtatttggggagtttctcccattcttctctgcagatcctttcaaactctgtcaggtAGGATGGGAACGTTGctacacaactattttcaggtctctccagagatgttagaccgggttcaagtccagccttgtcttggctgtgtgcttagggtcattatcctgttgggaggtgaacctttgccccagtcggaggtcctgagcactctggtgcaggttttcatcaaggatctctctgtactttgctccgttcatctttccctcgatcctgactagtctcctagtccctgccgctgaaaaacatccccaccgcctgatgctgccaccaccatgcttcacctcagggatggtgccaggtttcatccagatatgatgcttggcattcaggccaggagtggcttctgtctagccactctatcataaaggagTGATTAGTGgaatgttgcagagatggttgtccttctggaaggttctcccatctccacagaggagctctgtcagtgttcttggtcacctccctgaccaaggcccttctcccccgattgctcaatttgtccgggcgcagctctaggaagagtcttgctggttccaaacttcttcactttaagaacgatggaggccactgtgttcttggaccttcaatgctgcagaaatgtttttgtacctttccccagatctgttcctcttcacaatcctgtctcggagctctatggacaattcctttgacctcatgtcttggtttttgctctgacatgcactgtcaactgtgggaccttatatagacaggtgtgtgcatttccaaattatgtccaatcaattgaatttacagcagatggagtccaatcaagttgtagaaacatctcaaggatggaaaccggatcaatggaaacaggatgcacctgagctcaatttcgagtctcatcgcaaagggtctgaatacttatgtaaataaaggtatttctgttttttttatagaTTTGCAGAAATGTATATaaacctgttttctctctgtcatcATTGGCTATTGTTTAAGATTGGTGAGgatgattattttatttttaaaatccattttagaatgaggctaaataatactttctgaaagcactgaatACCTGGATAACCAGACGTCTAAGGTCACCTGGATAACCAGACGTCTAAGGTCACCTGGATAACCAGACGTCTAAGGTCTAGACTCGCTAGTTAATCAGTTATATGAATGGATCAGTTAAGTACCACGGAGAGATGAAGAGGCAGGACTGTGTGCTCCTAGTAGTACTAGTTGTAGCTGGGGTGTAGAGCCCTCTGTTGTCCATCCCTACTAGGGTTGCCAAACTCCAGGAACTTGTTTTTCCAGACATCCCGGTTGGGGGATTCACAGAATCTGAAGGGAATAAGAAGGAAATCTGGAgccctccaaccaggatttctggaaaaccagggaatttattgaaagttcctggaGTTTTGCAACCCTTTCCCTACTCTAAGCAGACATGGCATGTACTCTACATCATCGGTACTTGGTCTCTAAATCCATGAACTGAGGGAAGACTAAGAATTCCATTCGTATTGTGTTTCATACACAAAGTTTTTATTTGGGTCGTATGTCTTCGTGTGCATGTGCACGTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252486 lncRNA upstream 3494 8171963 ~ 8172223 (+) False LOC110520790
TU252494 lncRNA upstream 11701 8163294 ~ 8164016 (+) True G221262
TU252467 lncRNA upstream 55641 8119629 ~ 8120076 (+) True G221242
TU252365 lncRNA upstream 88455 8086667 ~ 8087262 (+) True G221153
TU252346 lncRNA upstream 241359 7930997 ~ 7934358 (+) True G221141
TU252457 lncRNA downstream 33601 8211659 ~ 8214241 (+) True G221232
TU252575 lncRNA downstream 105575 8283633 ~ 8328759 (+) True G221306
TU252580 lncRNA downstream 135772 8313830 ~ 8314890 (+) False LOC118945294
TU252574 lncRNA downstream 149143 8327201 ~ 8328604 (+) True LOC118945294
TU252648 lncRNA downstream 239062 8417120 ~ 8417804 (+) True LOC110520859
XM_036967642.1 mRNA upstream 16321 8148407 ~ 8159396 (+) True efna1b
XM_036967633.1 mRNA upstream 89265 7941302 ~ 8086452 (+) True LOC110513974
XM_021589071.2 mRNA upstream 547750 7618368 ~ 7627967 (+) True LOC110508507
XM_036967459.1 mRNA upstream 675180 7460440 ~ 7500537 (+) True LOC110508431
XM_036967452.1 mRNA upstream 727835 7437011 ~ 7447882 (+) False LOC118945274
XM_021598321.2 mRNA downstream 67170 8245228 ~ 8249653 (+) False LOC110520877
XM_021598322.2 mRNA downstream 67170 8245228 ~ 8249653 (+) True LOC110520877
XM_021598324.2 mRNA downstream 71695 8249753 ~ 8254163 (+) True krtcap2
XM_021598333.2 mRNA downstream 87022 8265080 ~ 8266671 (+) False LOC110520886
XM_036967709.1 mRNA downstream 87223 8265281 ~ 8266671 (+) True LOC110520886
TU252485 other upstream 3494 8170707 ~ 8172223 (+) False LOC110520790
TU251574 other upstream 727840 7446369 ~ 7447877 (+) True LOC118945274
TU251531 other upstream 794154 7378258 ~ 7381563 (+) False G220445
TU251520 other upstream 810432 7363298 ~ 7365285 (+) False G220435
TU251521 other upstream 810432 7363298 ~ 7365285 (+) True G220435
TU252560 other downstream 221013 8399071 ~ 8489067 (+) False G221299
TU252562 other downstream 221013 8399071 ~ 8489067 (+) False G221299
TU252563 other downstream 221013 8399071 ~ 8411530 (+) True G221299
TU252829 other downstream 550919 8728977 ~ 8732478 (+) False G221514
TU252831 other downstream 550919 8728977 ~ 8731107 (+) True G221514

Expression Profile