RNA id: XM_021598321.2


Basic Information

Item Value
RNA id XM_021598321.2
length 1419
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC110520877
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8245228 ~ 8249653 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAGCGTTCCTCATCCTCAACTGGTCTGTTTCCGTCCTAAATCGTTAACGAAACCTTACGTTCTTGAATGCACCCCAGATTTAAGTTGTTGTAGCAACGAGCTAAGCCATGCCTGCAGCTGAAGCGTCTGTTGTTTCTAGTCCTAGACACAGTTGTTTCAATTACTGGTAAATGTATCATCAAATGTGGCTAGTTTTTGGCTCCAAATACTGACTAACGAGTTGAACAACGTCGTATGTCCTGTATTGggtacattagctagctaagttagcactATCAAGGTACCATAGTACCCATAAAGGCACATCTTTGCTGGGGCAATGTCTGCAGTCAGCAGCCTGGTCCCGGCACGATTCCTGACTCTCACTGCTCACCTCGTCATCGTCATCACCATTTTCTGGTCACGGGAGAACAATGTTGAAGCTTGCCTGCCTTTGGATTTCACACAGGACCAATATGACAAGGAGGACACCAAGTTGGTGGTAGCGTTGTCAGTCACCATGGGTCTGTTTGctatagagctggctggcttcttCTCTGGTGTGTCTATGTTCAACTGCACCCAGGGCCTCCTCTCGTTGGCTGTCCACTGCAGCGCGTCCGTCTCCCTGTCTTTCTTTGTCTTCCAGAGATGGGAGTGTTGGACATACTGGGTTATTTTTGCCTTCtgcagTGTTCTCCCTGCATTTGTGGAGATCCTACTCTTCATCGCAGTGTTCGGACTGAAGAAGAAGCCACTATAACCGAGAGCAGTGTTTCACATCAATGTTCATCCTTCCCAGGACTTGTACACAGCTGTCCAAGTGACACATTGTGACTGTTCAATAGTGTCAAGGAGACAGAGTTGATGTTAGTGATGCTGGATGGTGATCGTAGTGATAAAGACAACAGAGCTGGTTAAGATGTGGGTGGTCTAAGCTGCAGCATCCGATACGGTGACAGCATAGGTTCGAATCTGGCCTTCTGACTTTTGACACAGCCTTTATCTATCCATCAATAGTCCGATTATTTTAATTTTAAGCTGTGGTCTGTGTTTCAGGATTGTGGACGTTGTAGATGGAAACAGAGCTACTGTATGTACCAAGGCAGAGAGGACGATTTCTAAAAACTCCAGCGTATTGATCCTAATTGCTACGCTGAATGTATAGACACAAGTAACCATCTTTCTCTTCACCATGCTAAATGGTCCTGTTAATAGGATTTTAGTACCACCTTTCTAAAACGTTTacctaaaaaatatatgttttatcaaGCTGAAGCTATCCCAGTTTGTTTTTCATTTCATTGTAGAGTCACTTGtaaaccatttcttttttttttttatatgctTTTTAAATGAATCTAAAATGTGGTGATATAGGGGTGTAGCTACCATCAGATATGTCCAAAAAAATTACTATTAAAAGTATTTTACCTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252457 lncRNA upstream 30987 8211659 ~ 8214241 (+) True G221232
TU252489 lncRNA upstream 67170 8175717 ~ 8178058 (+) True LOC110520790
TU252486 lncRNA upstream 73005 8171963 ~ 8172223 (+) False LOC110520790
TU252494 lncRNA upstream 81212 8163294 ~ 8164016 (+) True G221262
TU252467 lncRNA upstream 125152 8119629 ~ 8120076 (+) True G221242
TU252575 lncRNA downstream 33980 8283633 ~ 8328759 (+) True G221306
TU252580 lncRNA downstream 64177 8313830 ~ 8314890 (+) False LOC118945294
TU252574 lncRNA downstream 77548 8327201 ~ 8328604 (+) True LOC118945294
TU252648 lncRNA downstream 167467 8417120 ~ 8417804 (+) True LOC110520859
TU252687 lncRNA downstream 229649 8479302 ~ 8480109 (+) False G221394
XM_036967655.1 mRNA upstream 68970 8170634 ~ 8176258 (+) False LOC110520790
XM_036967642.1 mRNA upstream 85832 8148407 ~ 8159396 (+) True efna1b
XM_036967633.1 mRNA upstream 158776 7941302 ~ 8086452 (+) True LOC110513974
XM_021589071.2 mRNA upstream 617261 7618368 ~ 7627967 (+) True LOC110508507
XM_036967459.1 mRNA upstream 744691 7460440 ~ 7500537 (+) True LOC110508431
XM_021598324.2 mRNA downstream 100 8249753 ~ 8254163 (+) True krtcap2
XM_021598333.2 mRNA downstream 15427 8265080 ~ 8266671 (+) False LOC110520886
XM_036967709.1 mRNA downstream 15628 8265281 ~ 8266671 (+) True LOC110520886
XM_021598335.2 mRNA downstream 38312 8287965 ~ 8291009 (+) True LOC110520887
XR_005040410.1 mRNA downstream 64137 8313790 ~ 8328225 (+) False LOC118945294
TU252485 other upstream 73005 8170707 ~ 8172223 (+) False LOC110520790
TU251574 other upstream 797351 7446369 ~ 7447877 (+) True LOC118945274
TU251531 other upstream 863665 7378258 ~ 7381563 (+) False G220445
TU251520 other upstream 879943 7363298 ~ 7365285 (+) False G220435
TU251521 other upstream 879943 7363298 ~ 7365285 (+) True G220435
TU252560 other downstream 149418 8399071 ~ 8489067 (+) False G221299
TU252562 other downstream 149418 8399071 ~ 8489067 (+) False G221299
TU252563 other downstream 149418 8399071 ~ 8411530 (+) True G221299
TU252829 other downstream 479324 8728977 ~ 8732478 (+) False G221514
TU252831 other downstream 479324 8728977 ~ 8731107 (+) True G221514

Expression Profile