RNA id: XR_005040410.1


Basic Information

Item Value
RNA id XR_005040410.1
length 1581
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC118945294
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8313790 ~ 8328604 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTGTAACTTGTGGACGCTGGGTGTCGGGatgcaagtacagggagtgactttaataataaataacacaaggaacaaaacaagaaacacgagtagcatacagacatgaaacagtgaaacagaaacaataacacctggggaaggaaccaagaGGAATggcagatataggggaggtaatcagggaggtgatggagccCAGGTAAGTCTGATGAGGCGTTGGTGCACctaacaatggtgacaggtgtacgTAATGATGAGCAGACTGGCGACCTTGAATGCCGGAGGGGCAGTATACGTGACACAGAGGCTAAGACCATATTGTATTAATGAGATagaggtggtggacagaggataagaccatactgtaacaatgagatagaggtggtggacagaggaTAAGACCATACTGTAACAATGAGATAGAGGTGGTGGACAGAGGGGCAGAATACGTGACAAGGAGGATAAGACCATACTGTAACAATGAGATAGAGATGGTGGAAAGAGGATAAGACCATACTGTAACAATGAGATAGAGGTGGTGGACAGAGGGGCAGAATACGTGACACAGAGGATAAGACCATACTGTAACAATGAGATAGAGGTGGTGGACAGAGGCTAAGACCATACTGTAACAATGAGATagaggtggtggacagaggaTAAGACCATACTGTAACAATGAGATAGAGGTGGTGGACAGAGGTTAAGACCATACTGTAACAATGAGATagaggtggtggacagaggataagaccatactgtaacaatgagatagaggtggtggacagaggatcagaccatactgtaacaatgagatagaggtggtggacagaggaTAAGACCATACTGTAACAATTAGATGGATGTGGTGGACAGAGGATAAGACCATACTGTAACAATGAGATagaggtggtggacagaggataagaccatactgtaacaatgagatagaggtggtggacagaggatcagaccatactgtaacaatgagatagaggtggtggacagaggaTAAGACCATACTGTAACAATGAGATAGAGgtggtggacagaggaTAAGACCATACTGTAACAATGAGATAGAGGTGGTGGACAGAGGCTAAGACCATACTGTAACAATGAGATAGAGGTGGTGGACATAGGCTAAGACCATACTGTAACAATGAGATAGAGGTGGCGGACAGAGGATAAGACCATACTGTAACAATGAGATAGAGGTGGCGGACAGAGGATAAGACCATACTGTAACAATGAGATAGAGGTGGTGGACATAGGATAAGACCATACTGTAACAATGAGATAGAGGTGGTGGACAGAGGCTAAGACCATACTGTAACAATGAGATAGCGGTGGTGGACAGAGGATAAGACCATAATGTAGCAATGAGATTGAGGTGGTGGACAGAGGCTAAGACCATACTGTAACAATGAGATATAGGTGGTGGACAGAGACTAAGACCATACTGTAACAATGAGATagaggtggtggacagaggaTAAGACCATACTGTAACAATGAGATAGAGGTGGTGGACAGAGGCTAAGACCATACTGTAACAATGAGATAGAGGTGGTGGACAGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252457 lncRNA upstream 99549 8211659 ~ 8214241 (+) True G221232
TU252489 lncRNA upstream 135732 8175717 ~ 8178058 (+) True LOC110520790
TU252486 lncRNA upstream 141567 8171963 ~ 8172223 (+) False LOC110520790
TU252494 lncRNA upstream 149774 8163294 ~ 8164016 (+) True G221262
TU252467 lncRNA upstream 193714 8119629 ~ 8120076 (+) True G221242
TU252648 lncRNA downstream 88895 8417120 ~ 8417804 (+) True LOC110520859
TU252687 lncRNA downstream 151077 8479302 ~ 8480109 (+) False G221394
TU252688 lncRNA downstream 151441 8479666 ~ 8480109 (+) True G221394
TU252572 lncRNA downstream 173512 8501737 ~ 8538421 (+) True G221303
TU252700 lncRNA downstream 183554 8511779 ~ 8512379 (+) True G221406
XM_021598335.2 mRNA upstream 22781 8287965 ~ 8291009 (+) True LOC110520887
XM_021598333.2 mRNA upstream 47119 8265080 ~ 8266671 (+) False LOC110520886
XM_036967709.1 mRNA upstream 47119 8265281 ~ 8266671 (+) True LOC110520886
XM_021598324.2 mRNA upstream 59627 8249753 ~ 8254163 (+) True krtcap2
XM_021598321.2 mRNA upstream 64137 8245228 ~ 8249653 (+) False LOC110520877
XM_036967704.1 mRNA downstream 922 8329147 ~ 8331744 (+) True LOC118936617
XM_021598332.2 mRNA downstream 17213 8345438 ~ 8350294 (+) True s100w
XM_036967731.1 mRNA downstream 70812 8399037 ~ 8401940 (+) True LOC110520890
NM_001165171.1 mRNA downstream 79796 8408021 ~ 8410803 (+) True s10i
XM_036964051.1 mRNA downstream 84429 8412654 ~ 8414880 (+) True LOC110520854
TU252485 other upstream 141567 8170707 ~ 8172223 (+) False LOC110520790
TU251574 other upstream 865913 7446369 ~ 7447877 (+) True LOC118945274
TU251531 other upstream 932227 7378258 ~ 7381563 (+) False G220445
TU251520 other upstream 948505 7363298 ~ 7365285 (+) False G220435
TU252560 other downstream 70846 8399071 ~ 8489067 (+) False G221299
TU252562 other downstream 70846 8399071 ~ 8489067 (+) False G221299
TU252563 other downstream 70846 8399071 ~ 8411530 (+) True G221299
TU252829 other downstream 400752 8728977 ~ 8732478 (+) False G221514
TU252831 other downstream 400752 8728977 ~ 8731107 (+) True G221514

Expression Profile