RNA id: XM_036964051.1


Basic Information

Item Value
RNA id XM_036964051.1
length 1974
RNA type mRNA
GC content 0.50
exon number 3
gene id LOC110520854
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8412654 ~ 8414880 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAAACGCTTCTCACCTCTGGGTTGTCGTGGAGACACTCCTCACCTGGACAGTAGACTCCGCCCTGCATTAACCGGAATTATATAGTTTACACCTGGCGGCTAGATGGAATAAGGAAGTAATCTGCATAGGCTAATCCTAATCCACAGACAAAGGCCATTTTAATCGGAGGTCTTCTCGGCAGGCTGGGCTCGTCTGGCTGGGTCTGTAGGATTGATCCAGCAAAGATTGGAGGATACCCCAAATCTATTTCTCCAATAGGAATCCCAGATCACGCTTGTGACAGCACGCACATGGATCTAATCTTCCTCTCTCCCATTGACCTCAATACAACCACATGGTGATCTGTTCAACTACCCCTGTTCTGTAGTTGTTCATGGAAGTAATTGTTGGATGTGCCTCTAAGTTTAAaccctctctgactctctacCTACTATAGGTAGTAATCGGCTTTTGCACAGAAGGCTGTAGTGAATGGAGGTGGATGGAAGCGCCTTTGATGTGGTTTAGATAATCTATTGTTTGCTTTTGGCTGTCTGGTGACATGTTCGGCAGTGTGAAGAAAATAATCTCTCTGTTTGAGACTCGACGGCagcctcgccccctctctctacctccttccctccatccatctctctctccatctctaactccttcccttcctccatctctccctccatctctaactcaTTCTCTTCCTGCATCTGTTTCTTCATCTCTTCCcctatccctcccttcctccctatcCCCTCTCAGGTCCAGTAAAAAAGCCCCCCAGTCCCCCTTAAAGAGACACTCCTCTCCTTCTGGCTCCCTCTCCAGCTGCCCTTCCTCCTTCTCCAGCtgcccttcctccctctaccctcAGACCAAACCCAGACCCCCCCTTAACCCCCCACCTGTCCACCAACCACTACAACTTCCTGCTAGATGGAGAGTAGGAGAAGAAggcagggagggagtgagtgataCGGGTTGGGGTCATGGAGGGCTGAGAGGTCGTGGGGGGGTCAGGGTTAGGAACTCATGGCCGAGCGGACGGCAGGAGCTTCAGATAAGAAACCAAACATCTGTCACCATGGAGATTCCACAACACTTTTGGACCGCAACTAAACCTCAAATCCAGACCACTACTCAaccccaacctcaaccccagACCACTATTCAACCCCAGACCACTACTCAACCTGAACATCAACCGCAGACCACTATTCAACCCCAGACCACTGTTCAaccccaacctcaaccccagACCACTACTCAACCCCAACCTCAACCGCAGACCACTATTCAACCCCAGACCACTACTCAACCTGAACATCAACCGCAGACCACTACTAAACTCCAGACCACTACTCAaccccaacctcaaccccagACCAATACTCAACCAAAACCAAAACCTCACCCGCAGACCTCTACTCAACCCCAGACCACTACTCAACCCAAACATCAACCCCAGACTACTTCTAAGTCTCAACCTCAACCCCAGACAACTACTCAACCCCAACCTCAACACCAGACCCTGGCCCCGCTCCCATCCTGGTCGCTGTGTCTGAAGGGTACACCTTCTGTCCGGAATGCTGAGGCAGCCCTGCTGCTCTTCTGCCACAGtggCTCCAGTAGCAGTAAGATTGCAATTGACAACAAGATTGAGCAAGCCATGGACTTGGTGAAGAGCCACCTGATGCTGgctgtgagagaggaggaggagctacTGAGGAAGAGGATCAACCAGCTGTCAGAGAGGAATgcccagctggagagagagaactacataCTGAGagcactgagagacagacagagacactaacGCACTCatccacgcacacacaaacacacacatacacaaagagAAGTTAACAGTATTAGTACATGCCTTTCATTTTCTATTTAAAGGGGTGTTTTGATTAGTCctgtaaaatgtgtatttatatttaacctttatgtaCCCAGACGAGtcaagaacatattc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252575 lncRNA upstream 83895 8283633 ~ 8328759 (+) True G221306
TU252574 lncRNA upstream 84050 8327201 ~ 8328604 (+) True LOC118945294
TU252580 lncRNA upstream 97764 8313830 ~ 8314890 (+) False LOC118945294
TU252457 lncRNA upstream 198413 8211659 ~ 8214241 (+) True G221232
TU252489 lncRNA upstream 234596 8175717 ~ 8178058 (+) True LOC110520790
TU252648 lncRNA downstream 2240 8417120 ~ 8417804 (+) True LOC110520859
TU252687 lncRNA downstream 64422 8479302 ~ 8480109 (+) False G221394
TU252688 lncRNA downstream 64786 8479666 ~ 8480109 (+) True G221394
TU252572 lncRNA downstream 86857 8501737 ~ 8538421 (+) True G221303
TU252700 lncRNA downstream 96899 8511779 ~ 8512379 (+) True G221406
NM_001165171.1 mRNA upstream 1851 8408021 ~ 8410803 (+) True s10i
XM_036967731.1 mRNA upstream 10714 8399037 ~ 8401940 (+) True LOC110520890
XM_021598332.2 mRNA upstream 62360 8345438 ~ 8350294 (+) True s100w
XM_036967704.1 mRNA upstream 80910 8329147 ~ 8331744 (+) True LOC118936617
XR_005040410.1 mRNA upstream 84429 8313790 ~ 8328225 (+) False LOC118945294
XM_036967764.1 mRNA downstream 271 8415151 ~ 8417910 (+) False LOC110520859
XM_036967759.1 mRNA downstream 331 8415211 ~ 8417910 (+) False LOC110520859
XM_036967744.1 mRNA downstream 3063 8417943 ~ 8421019 (+) False LOC110520795
XM_021598212.2 mRNA downstream 3547 8418427 ~ 8421019 (+) True LOC110520795
XM_036967786.1 mRNA downstream 21252 8436132 ~ 8454424 (+) False LOC110520873
TU252563 other upstream 1124 8399071 ~ 8411530 (+) True G221299
TU252485 other upstream 240431 8170707 ~ 8172223 (+) False LOC110520790
TU251574 other upstream 964777 7446369 ~ 7447877 (+) True LOC118945274
TU251531 other upstream 1031091 7378258 ~ 7381563 (+) False G220445
TU251520 other upstream 1047369 7363298 ~ 7365285 (+) False G220435
TU252829 other downstream 314097 8728977 ~ 8732478 (+) False G221514
TU252831 other downstream 314097 8728977 ~ 8731107 (+) True G221514
TU252791 other downstream 346454 8761334 ~ 8763589 (+) False LOC110520796
TU252792 other downstream 359167 8774047 ~ 8774950 (+) True LOC110520836
TU252852 other downstream 425344 8840224 ~ 8908728 (+) False G221526

Expression Profile