RNA id: TU252648


Basic Information

Item Value
RNA id TU252648
length 542
lncRNA type sense_over
GC content 0.60
exon number 2
gene id LOC110520859
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8415151 ~ 8417910 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaatacacacatgcagacataaacacacacatgcagacataaacacacacagaaacacacacatgcagacataaacacacacatgcagacataaacacacacatgcagacataaacacacacagaaacacacacatgcagacataaacacacaccacacactaactgagtgtatgtccTGTCTTTGTCTATAGGGGTGAACGTCCCTCCATCCCAGCACCTCTACAGGGCATTGGTCAATgtgaatgtggaggaggaggagcttaTCAGCCAGGCTCTACGTGACAGGCTTCAGCTGGTCTCGCCCACATGCAGCCATAGCAACAAGaaaGAGGACAGTCCTGACCTGCAGGTTTTCTTCAGGGGGGATCTGCTGAGAGAGAAGCCCCTCCTACCAGGGGAGGAGATTACCATACCACGCCCCCAGCCCATCCCACGCCCCGCAGACACAACCTTCGACCTctaccacagacacacatgctGGGAGGCTGGACCCTGACACACACTTACTCTGAACCTCTAGACTGAAAGGCCCTGTCCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252575 lncRNA upstream 88361 8283633 ~ 8328759 (+) True G221306
TU252574 lncRNA upstream 88516 8327201 ~ 8328604 (+) True LOC118945294
TU252580 lncRNA upstream 102230 8313830 ~ 8314890 (+) False LOC118945294
TU252457 lncRNA upstream 202879 8211659 ~ 8214241 (+) True G221232
TU252489 lncRNA upstream 239062 8175717 ~ 8178058 (+) True LOC110520790
TU252687 lncRNA downstream 61498 8479302 ~ 8480109 (+) False G221394
TU252688 lncRNA downstream 61862 8479666 ~ 8480109 (+) True G221394
TU252572 lncRNA downstream 83933 8501737 ~ 8538421 (+) True G221303
TU252700 lncRNA downstream 93975 8511779 ~ 8512379 (+) True G221406
TU252581 lncRNA downstream 97646 8515450 ~ 8518668 (+) True G221312
XM_036964051.1 mRNA upstream 2240 8412654 ~ 8414880 (+) True LOC110520854
NM_001165171.1 mRNA upstream 6317 8408021 ~ 8410803 (+) True s10i
XM_036967731.1 mRNA upstream 15180 8399037 ~ 8401940 (+) True LOC110520890
XM_021598332.2 mRNA upstream 66826 8345438 ~ 8350294 (+) True s100w
XM_036967704.1 mRNA upstream 85376 8329147 ~ 8331744 (+) True LOC118936617
XM_036967744.1 mRNA downstream 139 8417943 ~ 8421019 (+) False LOC110520795
XM_021598212.2 mRNA downstream 623 8418427 ~ 8421019 (+) True LOC110520795
XM_036967786.1 mRNA downstream 18328 8436132 ~ 8454424 (+) False LOC110520873
XM_036967769.1 mRNA downstream 18329 8436133 ~ 8454424 (+) False LOC110520873
XR_005040415.1 mRNA downstream 18481 8436285 ~ 8457492 (+) False LOC110520873
TU252563 other upstream 5590 8399071 ~ 8411530 (+) True G221299
TU252485 other upstream 244897 8170707 ~ 8172223 (+) False LOC110520790
TU251574 other upstream 969243 7446369 ~ 7447877 (+) True LOC118945274
TU251531 other upstream 1035557 7378258 ~ 7381563 (+) False G220445
TU251520 other upstream 1051835 7363298 ~ 7365285 (+) False G220435
TU252829 other downstream 311173 8728977 ~ 8732478 (+) False G221514
TU252831 other downstream 311173 8728977 ~ 8731107 (+) True G221514
TU252791 other downstream 343530 8761334 ~ 8763589 (+) False LOC110520796
TU252792 other downstream 356243 8774047 ~ 8774950 (+) True LOC110520836
TU252852 other downstream 422420 8840224 ~ 8908728 (+) False G221526

Expression Profile