RNA id: XM_021598212.2


Basic Information

Item Value
RNA id XM_021598212.2
length 2309
RNA type mRNA
GC content 0.52
exon number 3
gene id LOC110520795
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8417943 ~ 8421019 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaagactgaaataacagtagcgaggctatatacagtagcgaggctataactcAGACATgtaatgttaactgactgatgATATTCTATgcataagatctcctaagcctgtgttaacctcagacatTATTTTCTATGTTTATCCCAAAACGCTATTCTTTCCCCATTTAATTTCCCCAATAGGAATGGCTGATCGAACCAGAGGTTAGAGTGTGTttattatgtagtgttgttgtgtgtaacacATTGGTGTAACAGGGAgttttgtgttggtgtgtgtgattgCTAACATCGAGCAAGTCCTTTCCCTACCACAGGATAGACATGTTTGTGTTTCAGTGGTGGGAACAATTCTGTAATTTTGTGAAAATGGTACTCCATCTCCCAGATTAACTCAATTGACATGGAATTGAGCCCAAATCACCTAGATATGTTGTTTTACATCTCCTAGATGTGTGGTTCAGGACCATCTCCAGTTAGAATCCATCAGCCTACGTCACCCTGTGCTGTAACCTGGGTGATATAGACcatccacactctctctcacacacacaggcacgcttGTACCATCTcagctcacctctctctctcacacgcacacccCAGTCTCTGAGACCCGGGCATCTCTCTCTGACCATGGACGTGTCAGCGCTGGGCAGTGGGAGCAGCTGTTCAGAGGATTGTGTGCTAGGGTCTGGCTGTCTGGAGGACTGTGGGAACCAGAGTGACCAGACTGACTGGGAATGGGAGGACTTCAGTGGGGCTGAGCTGGTGTGTGTGACAGCCGTGTGTGTGCTGCTGCTGGCCCTGGGCATCGCAGGAAATATGTTAACCATCCTGGTAGTTTGGCTCCGGCCACACCTGAGAAGCACCACCTACCTCTACCTGAGTAGTATGGCTGTCTCCGACCTCCTCATACTGCTTCTGATGCCTTTAGATCTGTACTACAAGCTGTGGAGGTTCCGGCCCTGGGATCTGGGTGATGCATTGTGTAAGCTGAGTGTGTTCATCAGTGAGAGTTGTACCTACTCCTCCATCCTCCACATCACCGCCCTTTCTCTGGAGCGCTACCTCGCTGTCTGTCGACCACTCACAGCCAAGACCCTGGTCACACGGACCCGCGTCCGCACTCTCATTGGCTGCCTGTGGGTTGTGGCCGTGATCAGCGCTGGGCCGGTGTTTGCTATGGTAGGGGTAGAGGAGCTggggggaggtgagggggagagcgAGTGTCGCTGTACGGACTACGCCGTCTCCTCAGGCCTGCTGGGGGCCATGATGTGGCTCTCCAACCTCTACTTCCTGGTGCCGCTGGGCATTCTGGGAGTTGTGTATGGTCTAATCGGCAGGAAGCTTTGGCTCCGCCCACAACGCAGCAGCCGAGACCGCGCCCAGCGACACACCATCAAGATGCTCGggaTGATCGTGCTGGCGTTTGTTCTGTGTTGGCTGCCGTTCCATGTTGGTCGGACGTTGTTCTCTCTGACTCTGGGCTCCAGCGCTGATATGTACTACATCTCTCAGTACTTTAACCTGGTCTCCTTTGTGTTGTTCTACCTCAGTGCTGCTGTCAACCCTATCCTCTACAACACCATGTCAGCACGCTACCGCCACGCTGTCCGCAGCCTGCTGCGCTCACACACACCCCGCTCCCACCACCCCCCACTCACCCCACAACACTCTACCACCACTCTGTAACTCACACACACCCCGCTCCCACCACCCCACAACACTCTACCACCACTCTGTAACTCACACACACCCCGCTCCCGCCACCCCCCACTCACGCCACAACACTCTACCACCACCCTGTAACTCACACACACCCCGCTCCCACCACTCCCCACTCACCTCACAACACTCTACCACCACCCTGTAACTCACACACACCCCGCTCCCACTCACCCCACAACACTCTACCACCACTCTGTAACTCACACACACCCCGCTCCCACCACCCCACAACACTCTACCACCACTCTGTAACTCACACACACCCCGCTCCCACCACCCCACAACACTCTACCACCACTCTAACTCACACACACCCCGCTCCCACCACGCCACAACACTCTACCACCACTCTGTAactcacggacacacacacacacacacacacacacacagaaaacctTGGAGATGGATGGAGGAATAAGACTTTGTTTAGAGGCACATTGTCTTTAGTGAGACATATTGTCAGATTTATTGTATAATATTTGGTTCATATATATTTGCCATTTTGATGACTGTTGGTTCTAAACccctgaaggtgtgtgtgttctcagagtGATGTGTAATAAACTGTAATTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252648 lncRNA upstream 623 8417120 ~ 8417804 (+) True LOC110520859
TU252575 lncRNA upstream 89668 8283633 ~ 8328759 (+) True G221306
TU252574 lncRNA upstream 89823 8327201 ~ 8328604 (+) True LOC118945294
TU252580 lncRNA upstream 103537 8313830 ~ 8314890 (+) False LOC118945294
TU252457 lncRNA upstream 204186 8211659 ~ 8214241 (+) True G221232
TU252687 lncRNA downstream 58283 8479302 ~ 8480109 (+) False G221394
TU252688 lncRNA downstream 58647 8479666 ~ 8480109 (+) True G221394
TU252572 lncRNA downstream 80718 8501737 ~ 8538421 (+) True G221303
TU252700 lncRNA downstream 90760 8511779 ~ 8512379 (+) True G221406
TU252581 lncRNA downstream 94431 8515450 ~ 8518668 (+) True G221312
XM_036967764.1 mRNA upstream 517 8415151 ~ 8417910 (+) False LOC110520859
XM_036967759.1 mRNA upstream 517 8415211 ~ 8417910 (+) False LOC110520859
XM_036964051.1 mRNA upstream 3547 8412654 ~ 8414880 (+) True LOC110520854
NM_001165171.1 mRNA upstream 7624 8408021 ~ 8410803 (+) True s10i
XM_036967731.1 mRNA upstream 16487 8399037 ~ 8401940 (+) True LOC110520890
XM_036967786.1 mRNA downstream 15113 8436132 ~ 8454424 (+) False LOC110520873
XM_036967769.1 mRNA downstream 15114 8436133 ~ 8454424 (+) False LOC110520873
XR_005040415.1 mRNA downstream 15266 8436285 ~ 8457492 (+) False LOC110520873
XR_005040417.1 mRNA downstream 15266 8436285 ~ 8457492 (+) False LOC110520873
XR_005040418.1 mRNA downstream 15266 8436285 ~ 8457492 (+) False LOC110520873
TU252563 other upstream 6897 8399071 ~ 8411530 (+) True G221299
TU252485 other upstream 246204 8170707 ~ 8172223 (+) False LOC110520790
TU251574 other upstream 970550 7446369 ~ 7447877 (+) True LOC118945274
TU251531 other upstream 1036864 7378258 ~ 7381563 (+) False G220445
TU251521 other upstream 1053142 7363298 ~ 7365285 (+) True G220435
TU252829 other downstream 307958 8728977 ~ 8732478 (+) False G221514
TU252831 other downstream 307958 8728977 ~ 8731107 (+) True G221514
TU252791 other downstream 340315 8761334 ~ 8763589 (+) False LOC110520796
TU252792 other downstream 353028 8774047 ~ 8774950 (+) True LOC110520836
TU252852 other downstream 419205 8840224 ~ 8908728 (+) False G221526

Expression Profile