RNA id: XM_036967789.1



Basic Information


Item Value
RNA id XM_036967789.1
length 2285
RNA type mRNA
GC content 0.52
exon number 10
gene id LOC110520844
representative False

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8466936 ~ 8495390 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACCGCACAGTTCCAGCTGcatagcagagagagaagagaggagagggaaatgaacagagagggaggagagaagaggagcaggaaTAAAGAGAGACAAGGGAGAGGAATGATCACAGAGCTTACAGtaTCTGAGCAGGGTCCCCACCAGCGTAATCTATTGAGGGAGCTACTGAGGGACTATAACCGTATGGAGAGACCTGTTGCCAACGACTCTCTACCACTCACTGTCCGATTCTCCTACACTCTCTTACAAGTCATGAATGTGGATGAGAAAAACCAGATTCTCACCACTAATGCCTGGCTTCAGATGCAATGGTTTGACCACTACCTTCAGTGGAACCAGTCAGAGTACCCTGGAGTGAAAACCCTTCGCTTCACTACTGACCAGGTCTGGATACCTGATATACTACTGTACAACAgTGCCCATGATAAATTTGATGCCACCTTTAAGAGCTATGTGCTGGTCAACTCCAGTGGATTCTGTGAGTACCTACCTCCAGGTATTTTCAGCAGTGCGTGTGAAGTGGACGTGCGTTGGTTTCCCTTTGACGTCCAGCACTGTGAGCTGAAGTTTGGCTCGTGGACGTTTGACGGCTGGCTGCTGGACCTCCAGATGCAGGAGGCTGACCTGTCAGGATACATGTCCAATGGAGAGTGGGAACTGCTGGGTGTACCAGGTGATCGTCATGAGATATTTTATGAGTGCTGTACAGAGCCCTACTCTGATGTGACCTTTGTTGTGACCCTACGACGGAGAACTCTATTCTACGCTCTCAACCTCCTCGTCCCCTGTGTTCTCATCTCCTCCTTGACACTGTTGGTATTTCTACTGCCAgcccaatcgggggagaagatcggtctgggCATTACAATTCTTCTCTCTCAGACTTTCTTCATGTTGCTTGTGGCTGAGATTATGCCAGCTACCTCAGACTGCATACCACTGATAgGTCAGTATTTTGTGAGTACCATGGTTACCGTAGGGATGTCAGTGGTGGCGACTGTAGTTGTACTTCAGTACCATCACCACGACCCCAACAGTGGAGACATGCCTCAATGGgttGAGTTGGTTCTACTCCAGTGGGTTCCATGGTTTCTGAGGATGAAGTGTCCAGAAGAGTGGGGTGAGCTCACACCCCAGCACAGCCCCTCCAACCCCCAGACCAAGACCTGCTCCTctgcccctcccaccaccaccaccccagcccCCTTAACCTTCCCCCAGAGCCTCACCTCTCTGCAGGCCAGTCTAAGCCAGCTCAGCCAGCCCCTACCACACCCACCTTCCAACCCTACCCTCCAGTCCTATCCCAACTATAATCCAAACCCCCAGCCTAATATCCACCTTAACCCAAATCGATATCCCCAGCCCCTTCTTAACCTACACCCCAATCTCCCCTCCATCCCCCACGCTCAGCCGAATGGACACCTGCCATACATGGGCTTCCAGAGTCCTCCTGAACCTGACCCTGCTGtcacctggagaggaggaagaggaggaggagaagaaagaagggGTTCTGACACCCgcatcctccaccaccacccaccctccTCCACAATGTTGGGAAGCCCCCGTTCACAACCCCCCACATCTCCAGACCCTGACCCCTCATCCTCAGGTTCCAGCTGTGTGGAGGATGGGGCTGGGGCAAGTACTTGCCATGCCCAGGCCAGGGTGTTCCAGGCTGGGGAAGCAGAGGCCCAGCTCCAGGCCCTGCTGGTGGAGGTGCGGTTCCTGGCCGAGGGTCTCCGTGAGCAGGACCGCAGGGTGAGCGTGGCGGAGAAGTGGCAGTTTGCAGCAGTGGTCATTGACCGTCTGTGTCTGGTGGGGTTCAGTGTGTTCAACATAATTTGTACCATTGCAATCCTCATGGCCGCACCCAACTTTGCAGAGGCCGCCTCCAAGGACTTCTTCTGAGAAGGAGCCCCGCTGCTTCTAAATTGTTGCCACCactcaaaaaaacaacaacaacatatatcCATATTTCTGCCAAGATGTGCTTTTAAGATCAGATTGACAAGTTATAACGCATATTTATTGCATTTGATGCATTCAGAGACTTTGGGGATTTTCATTTGGGGTAAATGGAGATTGGCAAACCCATGCTTAAGCTTATTTAAAGCTGctatgctgcatcagttgggCTACAGGTTATAATTATTTTAAAGAGACATTTTGTAGAATGTCCTTTTAAAAAGTCACCAGAAGTGACCATTTAACAGtcctaaaaaatatatttaacaaaCATCCCGGGGGAGCATGCCcccggacccccccccccc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU253266 lncRNA downstream 2390 8461540 ~ 8464546 (-) True G221855
TU253262 lncRNA downstream 9455 8454161 ~ 8457481 (-) True G221852
TU253244 lncRNA downstream 40819 8425678 ~ 8426117 (-) True G221835
TU253234 lncRNA downstream 52906 8413662 ~ 8414030 (-) True G221825
TU253212 lncRNA downstream 56127 8394361 ~ 8410809 (-) False G221806
TU253318 lncRNA upstream 72681 8567672 ~ 8570629 (-) False G221896
TU253319 lncRNA upstream 73585 8568576 ~ 8570629 (-) True G221896
TU253346 lncRNA upstream 114146 8609137 ~ 8611384 (-) True G221922
TU253295 lncRNA upstream 133692 8628683 ~ 8630117 (-) False G221880
TU253296 lncRNA upstream 133692 8628683 ~ 8630117 (-) True G221880
XM_036967678.1 mRNA downstream 223193 8214592 ~ 8243743 (-) False LOC110520794
XM_036967607.1 mRNA downstream 626461 7746237 ~ 7840475 (-) False si:dkey-246i14.3
XM_036967618.1 mRNA downstream 626462 7744358 ~ 7840474 (-) False si:dkey-246i14.3
XM_036967597.1 mRNA downstream 626463 7746237 ~ 7840473 (-) False si:dkey-246i14.3
XM_036967568.1 mRNA downstream 849743 7577008 ~ 7617193 (-) True LOC110520788
XM_036967868.1 mRNA upstream 204044 8699035 ~ 8702619 (-) False LOC110520892
XM_021598339.2 mRNA upstream 204044 8699035 ~ 8703263 (-) False LOC110520892
XR_005051422.1 mRNA upstream 206472 8701463 ~ 8701598 (-) True LOC118964373
XR_005051421.1 mRNA upstream 206892 8701883 ~ 8702017 (-) True LOC118964372
XM_036967924.1 mRNA upstream 309660 8804651 ~ 8825324 (-) False LOC110520835
TU253206 other downstream 56127 8394361 ~ 8410809 (-) False G221806
TU253177 other downstream 116647 8349319 ~ 8350289 (-) True G221788
TU252035 other downstream 893464 7558939 ~ 7573472 (-) True LOC110508494
TU252033 other downstream 908300 7556387 ~ 7558636 (-) False LOC110508494
TU252088 other downstream 936619 7528026 ~ 7530317 (-) True LOC110508472
TU253214 other upstream 8193 8503184 ~ 8523208 (-) True G221807
TU253420 other upstream 268128 8763119 ~ 8763884 (-) True G221986
TU253443 other upstream 309706 8804697 ~ 8817709 (-) False LOC110520835
TU253445 other upstream 322830 8817821 ~ 8818214 (-) False LOC110520835
TU253444 other upstream 323693 8818684 ~ 8821067 (-) True LOC110520835

Expression Profile