RNA id: XM_021598276.2


Basic Information

Item Value
RNA id XM_021598276.2
length 2509
RNA type mRNA
GC content 0.54
exon number 13
gene id LOC110520846
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8686537 ~ 8703190 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGTGACTGTCTCTCCTGCCCATAGTTTCTCTGTGCTGGTGAGGGCATGGGCAGCGGGCAGGACCAGTTTGAGAGTGACAGTTCAGCTGGCCAATCACACGTCAGCCTCCCACCAGCAGCTTTCTGACGAGATACAGATACTGgtGTACCAGGAGATGCAGCTGGCTGTAGGAACCTCCAGATCCATCCTCATGTCTCCCTACTCACACTACGCACTACAGAGCAACAAAGACGCAATCTGTCCTGTGCGGTACGccctgtgtcagtgtgtgaaAGGGGAGGGTCTTGTAACGGTGGACAGCCAGGGAGTTCTGAGGGCGGGGCCTGACACGGGATCCGCCCTGCTGGAGGTCATCGCTATGGAGACCTGTGGGGTCAACCAGACCCTGCTCATCAGCGTCCGGGTGTCTCCAGTGTGGTTTGTCAGGCTATTCAGTGTGTCCAGCCTGTACAGTGTTGGAGGGGGAGGCCTGCCTGCCTTTCCCCTGGGTTGGACCATCAGAGTCAGGGCTCTCTGCTACGACAACCTGGGACAACAGTTCAACGCCCATAACACCCTCACACACATTACcaccaacagggatgACTTGGTGCAGGTGACTCCAGACTCAGACAGTCATTCCTTTGTGGTCCAGACAGTGTCTGGGGGTTTGACAGTCCTAGGGGTGCAGGCAGACCCCACCAACCCCTCCCTGAGtgactacacccccctccctgtcctccccgcCATCTCTGCCCCGCCACACGCACTCAGGCCCGGAGACACACTCTGCTTCAACACCCCCCTGACAGGACCgcaaggccAGCCAGGTCAGTGGAACGTGTCGTCTAGTCGTATTCTGCAGATTGACCCAAAGACGGGAGCTGCTCTGGCAAAGCATTCTGGGACGGTAGTGGTCTACTACAGACTGGAAGGTGGACAGCAGGCCCTCagagagGTGAAGGTGGACTCTCCAGTCATCCCAGAACTCTCTCCTCCTGATGATCGTTTTCTCACCAACTGGCCTGACGCAGCTGACTACACTGTTCCTGTGGAACTATACACCTCCCCCTTCAACACAGCTCAGTGTTCCCTGTCCCAGAGGGAGGCCATAGAGAAGAGGCTGCAGCCAGAGGCAGAGTTACGGTGTTTCCTGCATTTCAGCGCCCCCTACCTCCAGCTCAACACGCTGCAGGCTGTGATGGTCACCACGCCTCACTATGACCTCGACACAGGTGAATACAGCTGCAGAGTCTCTGTCCGTCCCCAGTCAGACTccgtcctccacctcctctcctccctctctgtctccgtcgctctctcagcctctctgcgGGGCCAGTCCCCcgtccctgtcctccctctctctgctctgtcgcTACCTCTCTCCGGACGTTTGGTACAGTTGCCGTACCTGCCTGCGTTCCACTGCCCAGTGTCTTTCCTGGTGCTATCTGCTCTGCATCCCATGGCAGAGTTCTCTGTGCTGGGCACCAAGGAGGTGCTCTCTGCCCTACAGTTCCACTCTGACAGTACTGACGTGCTGCTATCTGAGCCCAGTCAATCAGACGGACATCTGGTGTTGTCTGTATACATTTCCACTTCCTGGGTCAAAAGTCAGGCCCTGCCCCCTCCTGCCAACATCACCCTCTCCAGCCACCTGACCCCACAGACTCATGCCCTTACAGTTTACATCACGGTGGACAGCGAGGTGAAGATAGGTTCCACAGATCTGATTCGTCTACAATCTTCCTGGACTCAGCTCCTGGACTTCCATCTCATCCTGGTCTTTGCTGTGTTTGCAGTTATGGCCACTACTGCCACCTTATACATAGTGTTTAACTCCTGCATGCAGACGGTTCCTGTCCCGGTGGTCGGCCTGTACTCCAACACACTGGAATGCAGCAGGACGGTGCGTTTCTCTCCCTGGATCAGACCCTCGTCTCCAGACACAGAAAGGATCATCCGCCGACGCAACTGGCTCTGGAGCACACGGTGACACTAACAGCCCTGTGAATGATCCATGTTGAAACCTTCCAACTAAACCATTTCCTGCCAAACGTCGTCAGCGTGTTGCGTTGGTCCATTTAAggcacaggtgtcaaactcattccagagGGACGAGTGTCTGCCGGGTCTCGCCTCCCTTGTACTTGgttgaattaaggtcactgattagtaagtTATTGTCCTCGCCTGGTTAtttaggtcttaattgaaagggaaAAAACAGCAGACCCTAGGTCCTCTATGGAATGAGACACCCCTGATTTAAGAACAGTGGGTCTACTTGAACAGGGTCTCTAGGTAGTTGTTCAGGCATAGATCTATGACCAGCATACATTCCCCACATCACACCATGTTGTTTTCTAATAATAGTCAAAGATTGACAAGTAAACTGGATTCTTTAACAAAAAGCTAAACTTTATTAAGTGAGAGAGACCGGTGGAGTGATGTCATGCCAGGGGACGTTCTCTCTCTACATACACAAAGCAGAGCTCAACACCATCTTTCCTCTTCAGTTTCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252814 lncRNA upstream 7739 8678496 ~ 8678798 (+) True G221499
TU252742 lncRNA upstream 17022 8573930 ~ 8669515 (+) True G221441
TU252786 lncRNA downstream 64814 8763974 ~ 8766590 (+) True LOC110520796
TU252784 lncRNA downstream 101350 8800510 ~ 8801779 (+) True G221469
TU252873 lncRNA downstream 122970 8822130 ~ 8825071 (+) True G221545
TU252872 lncRNA downstream 123964 8823124 ~ 8823805 (+) True G221544
TU252874 lncRNA downstream 126890 8826050 ~ 8826757 (+) True G221546
XM_036967855.1 mRNA upstream 1754 8680513 ~ 8684783 (+) True LOC110520797
XM_036967830.1 mRNA upstream 28854 8639044 ~ 8657683 (+) True LOC110520861
XM_021598313.2 mRNA upstream 49171 8631406 ~ 8637366 (+) True LOC110520869
XM_036967821.1 mRNA upstream 58065 8532941 ~ 8628472 (+) True LOC110520896
XM_036967816.1 mRNA upstream 163320 8499728 ~ 8523217 (+) False adar
XM_036967848.1 mRNA downstream 4550 8703710 ~ 8714435 (+) True LOC110520870
XM_036967901.1 mRNA downstream 16836 8715996 ~ 8764972 (+) False LOC110520796
XM_021598291.2 mRNA downstream 68617 8767777 ~ 8771883 (+) False LOC110520852
XR_005040446.1 mRNA downstream 68617 8767777 ~ 8771883 (+) True LOC110520852
XM_036967881.1 mRNA downstream 73176 8772336 ~ 8800464 (+) False LOC110520836
TU252560 other upstream 197470 8399071 ~ 8489067 (+) False G221299
TU252562 other upstream 197470 8399071 ~ 8489067 (+) False G221299
TU252563 other upstream 275007 8399071 ~ 8411530 (+) True G221299
TU252485 other upstream 514314 8170707 ~ 8172223 (+) False LOC110520790
TU251574 other upstream 1238660 7446369 ~ 7447877 (+) True LOC118945274
TU252829 other downstream 29817 8728977 ~ 8732478 (+) False G221514
TU252831 other downstream 29817 8728977 ~ 8731107 (+) True G221514
TU252791 other downstream 62174 8761334 ~ 8763589 (+) False LOC110520796
TU252792 other downstream 74887 8774047 ~ 8774950 (+) True LOC110520836
TU252852 other downstream 141064 8840224 ~ 8908728 (+) False G221526

Expression Profile