RNA id: XM_021598339.2



Basic Information


Item Value
RNA id XM_021598339.2
length 578
RNA type mRNA
GC content 0.51
exon number 4
gene id LOC110520892
representative False

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8699031 ~ 8703263 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AACACTTCCGGCCCCCGCTCTTCGGCCCGTTCATTTATTAACTGTCAACTTCCGGTTGATCCTTCTTTTCGGCAACGGCTACAAACTCGCCAACATGCCACTCGCAAAGGACCTGTTGCACCCAACctcagaggaggagaagaggagtcaCAAGAAGAAGCGTCTTGTACAGAGCCCTAACTCGTATTTTATGGACGTCAAATGTCCAGGATGCTATAAGATCACGACAGTGTTCAGTCACGCCCAGACGGTCGTCCTGTGTGTCGGATGCTCCACAGTCCTGTGTCAACCTACAGGGGGTAAAGCACGCCTCACAGAAGGATGCTCATTCAGGAGGAAACAGCACTAGACTCTCAGCAATGGAGCTTGTTGGACCGAGAGACCCAAGGGAGGAGAGACGAGTGACCCCACAGTGACCCTGCTCAGGAAGTGACAACGCGAGAGAAAGTGGAGATGAAACTGAAGAGGAAAGATGGTGTTGAGCTCTGCTTTGTGTATGTAGAGAGAGAACGTCCCCTGGCATGACATCACTCCACCGGTCTCTCTCACTTAATAAAGTTTAGCTTTTTGTTAAAGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU253395 lncRNA downstream 3070 8695411 ~ 8695965 (-) True G221964
TU253394 lncRNA downstream 3959 8694844 ~ 8695076 (-) True G221963
TU253393 lncRNA downstream 4233 8694567 ~ 8694802 (-) True G221962
TU253392 lncRNA downstream 4661 8693991 ~ 8694374 (-) True G221961
TU253391 lncRNA downstream 5138 8693374 ~ 8693897 (-) True G221960
TU253399 lncRNA upstream 1738 8705001 ~ 8705540 (-) True G221967
TU253407 lncRNA upstream 15577 8718840 ~ 8722818 (-) True G221975
TU253421 lncRNA upstream 60723 8763986 ~ 8767476 (-) True G221987
TU253422 lncRNA upstream 67301 8770564 ~ 8771933 (-) False G221988
TU253423 lncRNA upstream 67301 8770564 ~ 8771933 (-) False G221988
XM_036967794.1 mRNA downstream 203645 8466936 ~ 8495390 (-) True LOC110520844
XM_036967789.1 mRNA downstream 204044 8466936 ~ 8494991 (-) False LOC110520844
XM_036967678.1 mRNA downstream 455292 8214592 ~ 8243743 (-) False LOC110520794
XM_036967607.1 mRNA downstream 858560 7746237 ~ 7840475 (-) False si:dkey-246i14.3
XM_036967597.1 mRNA downstream 858562 7746237 ~ 7840473 (-) False si:dkey-246i14.3
XM_036967924.1 mRNA upstream 101388 8804651 ~ 8825324 (-) False LOC110520835
XM_036967917.1 mRNA upstream 101388 8804651 ~ 8839675 (-) False LOC110520835
XM_036967919.1 mRNA upstream 101388 8804651 ~ 8839675 (-) False LOC110520835
XM_036967926.1 mRNA upstream 101388 8804651 ~ 8839676 (-) False LOC110520835
XR_005040454.1 mRNA upstream 103519 8806782 ~ 8839676 (-) False LOC110520835
TU253214 other downstream 175827 8503184 ~ 8523208 (-) True G221807
TU253206 other downstream 288226 8394361 ~ 8410809 (-) False G221806
TU253177 other downstream 348746 8349319 ~ 8350289 (-) True G221788
TU252035 other downstream 1125563 7558939 ~ 7573472 (-) True LOC110508494
TU252033 other downstream 1140399 7556387 ~ 7558636 (-) False LOC110508494
TU253420 other upstream 59856 8763119 ~ 8763884 (-) True G221986
TU253443 other upstream 101434 8804697 ~ 8817709 (-) False LOC110520835
TU253445 other upstream 114558 8817821 ~ 8818214 (-) False LOC110520835
TU253444 other upstream 115421 8818684 ~ 8821067 (-) True LOC110520835
TU253485 other upstream 150554 8853817 ~ 8949187 (-) False G222023

Expression Profile