RNA id: XM_021598291.2


Basic Information

Item Value
RNA id XM_021598291.2
length 2394
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC110520852
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8767777 ~ 8771883 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCACTCGCGAAGGCTGTCGGGAGGTTTAGTTCAGAAGCTATGCGATAAAATAAACGCCAACGCGGTCAAAAACTACAATACACCGAATTCCCAAGTTCTGTGTGCGTCGTACTCTCCCATTTGACAGGTAAAGAGACACCAGTGAAGAGGGATTTGCCAAACAGACTGTCACTACGAGCAAGGACAAGATAATAATGGGTGACAGTAGTTGCAGCAACGGGACCCACCACTCGGGGGCGGCGCAGTCAGACCCACAGCTGTTTGAGGCCCAGTTTGAGGAGCTGGTGACCGAGCTCACAGAGCAGGACCTCACAGACTCTGTCCTCGCTGACGCTCTCAACAGACTCCGAGAGGTGTTGCATTACAACACTCCTGGCGGAAAAAGAAACAGAGGCCTGTCTGTGATTGGCTCTTTGAGGGAGCTTGTTCCTCCCACTGAGCTGACCCAGGATGCTGTTCGACGGGCCCTGCTGGTTGGCTGGTGCATTGAGCTGctccaggCGTTCTTCTTGGTAGCTGATGACATCATGGATGCTTCAGTGACTCGGAGAGGTCAGCCCTGCTGGTACAAGAGGGAGAGTGTGGGTCTGGATGCCATCAATGATTCCTTCCTCCTGGAGGGATCCATCTACAGACTACTGCGCAGACACTGCAGGGCACAGCCCTACTATGTACACCTATTGGAGCTCTTCACTGAgACGTCCTTCCAGACCGAGCTGGGCCAGGCACTGGACCTGATGACCGCTCCTCCTGGTCAAATAGACCTCAACCGCTTCACCATGGAGAGATATAAGGCCATAGTAAAGTACAAGACTGCCTTCTACTCCTTCTACCTCCCTGTGGCAGCAGCCATGTACATGGCGGGCATCGACAGTGAAGAGGAACACAACAACGCCAAACATATCTTACTGGAGATGGGAGAGTTCTTCCAGATACAGGATGACTACCTGGATTGCTATGGCGACCCGGCGGTGACAGGGAAGATTGGAACAGACATCCAGGACAACAAATGCGGCTGGCTGGTGGTGACCGCTCTAGGGGTCATGACCCCGGAACAAAGGGCAGAGCTGGAGTCATGTTATGGTCGGCATGACAGTGTGGAGAAGGTGAAAGCACTGTACAACACCCTACAGATGCCCACCCTGTACCACCAATACGAAGACGACAGCTATCAGCGCTTACAGAAACTCATCGCGCGCCACGCCCAAAACCTTCCACACGCAGTTTTCCTCAACTTTGCCAAGAAAATCTACAAGAGAAACAAGTGAACACTATGATGAGACTGTTTTTATTTAGTGTGTGTTGCACTGTAGCTGGACTGAGGAGGGCTAGTTGGTGTGGCTGCTTCCATTTCGGTCCCTTGCTCCTACCCCTTCAGTGAACACCATGGGGTTAAGGGCtagggcagggctctccaaccctggtcctggagagctaccatcctgtaggttttcgctccaaccctaatctaatGCACCTGATTGTAATAAGAgtggaaacctacaggagggtagctctccaggaacaggtttgggGAGCCCTGGGTTAGGTTAAGGGTCTAGGGACCTAAATAGAACAAGGCTTTAGTTTGGACTGCGAGTGAACCTGGTTGAGGCCAGTCAGTCTTAAACCTGGTCTTCAAGGACCCCTGTGTgcccttttttcttcttctccataATATGATTTTCAATTATGTACAGAATAACTGATTACTCAAACTGGGAATACCATGTCATCATTGATGATGACGTGAGTATAACATCATGTcactgttaggaactgtctgctCTAGAATCCTGTGGATTTGATGATGACGGCAGGGTATGACATCATTATTGGTTGATGATCACATCAATCAGGATGACAACCTGGGGCTCTGGTCTCTACCGGCAGGGGGCTCTGGTCTCTACCGGCAGGGGGCTCTGGTCTCTACCGGCAGGGGGCTCTGGTCTCTACCGGCAGAGTGAATGGACTAGAGCAGGAAGCTGCCTGAAAGGAACAATCCTGCTGTCTCTCACACCATGTTCTGTCTTTGTATTATgttttctctatctccctctgtgtATAATCATCTCTTTCTAATTACTACTGTACCTCTATCTCACTCTGTGTATAATCATCTCTTTCTAATTACTACTGtacctctatctccctctgtgtATAATCATCTCTTTCTAATTACTACTGtacctctatctccctctgtgtATAATCATCTCTTTCTAATTACTACTGtacctctatctccctctgtgtATAATCATCTCTTTCTAATTACTACTGtacctctatctccctctgtgtATAATCATCTCTTTCTAATTACTACTGTACATCTACCTGCTGCTGACAATATGGCATCGTATTGCTTTTAATAAAGAAATGTGACCAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252786 lncRNA upstream 1187 8763974 ~ 8766590 (+) True LOC110520796
TU252779 lncRNA upstream 64587 8699031 ~ 8703190 (+) True LOC110520846
TU252777 lncRNA upstream 68187 8699031 ~ 8699590 (+) False LOC110520846
TU252814 lncRNA upstream 88979 8678496 ~ 8678798 (+) True G221499
TU252710 lncRNA upstream 137688 8628664 ~ 8630089 (+) False G221415
TU252784 lncRNA downstream 28627 8800510 ~ 8801779 (+) True G221469
TU252873 lncRNA downstream 50247 8822130 ~ 8825071 (+) True G221545
TU252872 lncRNA downstream 51241 8823124 ~ 8823805 (+) True G221544
TU252874 lncRNA downstream 54167 8826050 ~ 8826757 (+) True G221546
TU252853 lncRNA downstream 68341 8840224 ~ 8847721 (+) False G221526
XM_036967901.1 mRNA upstream 2805 8715996 ~ 8764972 (+) False LOC110520796
XM_036967848.1 mRNA upstream 53342 8703710 ~ 8714435 (+) True LOC110520870
XM_021598276.2 mRNA upstream 68617 8686537 ~ 8699160 (+) False LOC110520846
XM_036967855.1 mRNA upstream 82994 8680513 ~ 8684783 (+) True LOC110520797
XM_036967830.1 mRNA upstream 110094 8639044 ~ 8657683 (+) True LOC110520861
XM_036967881.1 mRNA downstream 453 8772336 ~ 8800464 (+) False LOC110520836
XM_036967883.1 mRNA downstream 453 8772336 ~ 8800464 (+) False LOC110520836
XM_036967889.1 mRNA downstream 453 8772336 ~ 8800464 (+) False LOC110520836
XM_036967898.1 mRNA downstream 454 8772337 ~ 8800464 (+) False LOC110520836
XM_036967950.1 mRNA downstream 68307 8840190 ~ 8853689 (+) False LOC110520850
TU252791 other upstream 4188 8761334 ~ 8763589 (+) False LOC110520796
TU252829 other upstream 35299 8728977 ~ 8732478 (+) False G221514
TU252831 other upstream 36670 8728977 ~ 8731107 (+) True G221514
TU252560 other upstream 278710 8399071 ~ 8489067 (+) False G221299
TU252562 other upstream 278710 8399071 ~ 8489067 (+) False G221299
TU252792 other downstream 2164 8774047 ~ 8774950 (+) True LOC110520836
TU252852 other downstream 68341 8840224 ~ 8908728 (+) False G221526
TU252844 other downstream 75953 8847836 ~ 8851563 (+) False G221525
TU252867 other downstream 89617 8861500 ~ 8863976 (+) True G221539
TU252851 other downstream 134735 8906618 ~ 8908728 (+) True G221526

Expression Profile