RNA id: XR_005040454.1


Basic Information

Item Value
RNA id XR_005040454.1
length 6411
RNA type mRNA
GC content 0.58
exon number 13
gene id LOC110520835
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8804651 ~ 8839679 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AatcacccttctctccctcccttctctcccgcCTCTTGGAGCTCCTGAAAGAGTGTGCGGTGTGTTGCTTTCAGCTTGTTTGAGACTGCTGTAACCTTCTACTCAGTGCTTCTACTACGGGCGCTTTCCGCTCAGAAGCCCCCGTTTTGTGAATGGGCTTCAGTCCGCTCTAACTTCAACCGTGCCCGGGTAGCGCAAGGAACGAATTCAGATATGCAAACAGGCTAAACGCAGTTCTGGGACGCGCACGCTCGTTCaagtctgactgactgacagacagagcgACAAAGCGCTGGACAGAAAGCCTTTTGATATTTGATCTCTGGACAATACCTGTTCCCTTCCACCCTGGGTgctgcccccccccacccctcccccctcacccctcccccctcacatCTCTGATGGACCAGAGAGCGAAGGGGGGCCCATCTCTACCTCCACCATCCTCACTGCCTCTCCTCCCCACAGCCCCACCACAGCAGTACCCAGAGAAAGAGGTAGGCGGTGGGacgaggaagaggacagagaaggaaGGAGGTGGTGCAGTACTGGAGGTGCTCATTGAGGGGTGCTGTGGTGCTGCAGGGCAGAGACAGCTCCCATTCCCAGGCAGAGAGAGGAGCTGCACTGAGGGCAATGTGAGGCTGAGGATCGGAGTCCAAACGGCCAAACGCACCAAGAAACTCCCCAGGACCCTGGAGGGCTACGAGTGTAAACCCACCATCAGGACGTACCAGAGGCCTGGGAGGGGGAGTCAGGAGGTAGGGGGGAGTGGGCAGGGGAACCGTCCTCAGGAGGAGGGGGACGGAGAGCAGAACCAGGGGTCAGACCCCAGCACCACCCAGACCAGGAAGATACACTCCTCCCTGCCTccgtcttcatcatcatcatcatcagccccTACAACCACCCCTCCCAGCCCAGCCAACCCTCAGACTGCGCCAGCCAAACAGCAGGTCCCTGTGAACCTGGGCTATAAGAAGTCAGACACCCTAACGGAGAAACCATGGCACCCTGACCCACCTGATGCCCACAGCAAACTACCTTCACCTGCCCAAATGAACCAGGCAATCGCCTCTGACCCCACAGCTTCATCCCCCCattccccccctccctcatcaCCCCATTCCCCCTTGGTAAAGGACCCTAGCAGTGAGGCAGGTGTTAAGGGTGATGGAGGTATGCTAAATGGGGGAGTACCTACAGTCACCTGCCATCCTACCAGACTCACAAAGGTCAAAGGTCGCAAACAGAACTGTTCTTCCTCAGCCGCCCCCACTAACGTGAACTCAACAACAAGACCTCCAGCCTCCAGCCCCCATCAGGCCGACCTTGCAGCCCAGGACAGGACTACAGGCTTCAGCTGCCCTCCTACACCACCTCCATTCACACCTCTACTTCTAGACCAGAGAGGAGCCCCAGTGGCTGATGGGAGACTGAGTCCTGCTGCCTCCCTCACCAGCCTGAGCAGGGGACCATTACGACCGTCCTCTGTGggaaatgagagagggaaggaggagaaagccaagaagaagaaagagaaagatgaCAAAGTGAGGGGTGAGAAAGGGAAGggtaagagaggggagaaggggagagggaaggaggacagagggaggaatgagaGTCCAAAGATggacagagatgagagagggaaggaaggaactGGGATGGATGAGAGCGGGAGGGATATgatggggaaggaggagagaaatggGGACGAGGACAAGGAAAGAGAGAAGCCCAGAGACTTGAGGATGAATAAATCGCCCTCTTCTACAAAGTGTCAGATGTCTGAGGTTCAGAGCAGGAAGACAGGTACACCCAGCCCAGACCTGACCAGCGGAACATGGGAATCAGATGATATTGGTGTCCCCTCAAGACCCAccgtctctccctccaacccatccactgcctcctctcccctcacttccctccctcctccccctctctctgtccactcttcctctcctcctacctccccCCGAGAGCAGGACAGCCGTCCGCTGAAGAAGCGTAAAACCCGACGGCCAAGCTGGACCAGGCTGGTGAACCGGGCACAGAGACTGGCAGAGAACCCAGATGGCCGCCAAGATGGCCCCTTAGTTGCCCCACAGACCCCCACTACCCCCCAGACACCCGCAACTACTAACTCACCCAACTTTCGGTCAGCTGAGTCATGCCTATCCCCCTCCATTCCCCCACCCTCCAGTccgtcctccctctccctttctaccTCCACCCCTGTGAGACCCAGACCAGCAGGGCGATCCCCATCCCCTACCCAGTCTCACCTGTTGACCTCTGACCCTAGCCCTTCACCTGGACCTGGCCGTCCTGTCTCTCAGGCCAGAAAAAGGGGTCGCCCCAAATCCCAAACCTCGAGCTTGGACGAACCCCAACCCAGACACTCCCCTAAACCTACCCAAGCTGAGATGCTCCCTCATGGGCATGATGAGACTCCGGACCCCCATGTGCTCAACCCAGTGCTGGATCACAGTCCCACCCTCACCAATCCCTCTAGCCCCAACCCCACGCCCAGGAAACGAGGTCGCCCCAAACGgctgcccccctcccccctcctccccaaacAGACTCCCCAGGACCAGAACAGGGGTACACTGACCCCCTCTGGAGGTGAGGAGGGGGGTAAAGACTTCCCCTCTGAAAAGGGGAACAGGAAGCTGAGGATGAGGAGCATCataggagagatgaagaggaggaagaagaggaggctaCTCAGGGAAATGCTTTCTGGGTgtggaggggggaaggaggggagaggaagagagggaggtagagagaactCTCGTGGGTGTGCAGGAGGGGTTTGTGGATCGGCCACAGcaccctccctgtcctcctcctttgGGGGTAAACTAGGTCCCCAGATCAACGTGAGTAAGAGGGGGACCATCTAcatggggaagaggagaggacgcAAACCCAAAGCTCCAGCTAACTCTAACCCTGCCTCTCAGTCCACACTGTTCACCAGTCTCTCtagttcctctctcttctcctctccccaggcccatcctcccctctctcacccattcccctccccatctctcacccACTCCAGTGGAGCCCAGAGCCCTTACAGTGATGGAGGCTGCACAGAAcctgctccctccctcttcctcccccacaccttctccctcccctcaccctcctcctcctgtgcatcgccacgtcctctctcctcctccttctcctcctgctcatccctctctccctccctaaagAGGAGTTCTCCAGGTCAGGGACGACATCCCCTCTTCCACCATCCCTCCAGCagactctcttctcctcctcttcctcaccctctTTACCCCCATCTGCCTGTCTTCCCCACACACCTGAAAGAAGCCACACCCTCACCTATCAGTAAATCACACAGCAAGGAGATGTTGCCTAGTGATAGTGTGATTGGAATGGACCACAACACTATctcagagaggggggaaaggaggggccgagggagagggggggtaacCATGGGAATGACCTCAGATGTCACCCGGTCAGTGTTCCGGACAGGTTTAGGGGTCAACCTGAAGGGTCAGAGACAACCCTCACCCTCCATGTTACTAGAACACCCCCCTCCTGTACCCTCACCCATCAGAGTGTCAGcctcacccccccctcccccctctgcctCCCACAGACACACTCCTCCTTCTGACTTAGTGGAacccagagacagacacaggcacaggcgGAGGGGGTACGAATGTCCCTATACCTGCCCCCCCTGCCCCTGCCTAGGGCACAACCAGCGCTCCCACCTGGACCACTGCCCCTGCCTAGGGCACAACACACACAagagacagaaacacaaacacaagagGAAGTACCAGCACCTGCTCATGCATGCGCACGACCCAGACTTCCTCTCTGAACTGGACGATCTCATTGGGCAGTTCAGCGAGGTCCGCATTGGGCGCCACCGTGATTGGGCCAAAGCTGGATTGGGGCAGGATCTCGATGAGAGTGGGGAGAAAAGACGGCACTCTTCCTTATTGCCATCGCAAAATTTCCGCTCAAACGTTTACAGAATCGACTTGAGTGGATACTACTCGCCTCACCCCCTGTcttaccccccccacccctccttctCCCCGCTCCACCCCCACCCCTGCCACGGCCTGCCTTATGGCAGCAGAAAGCCAGAGCTGAGGTTGAGGTGTGGCTGTCCCACCAAGCCCTGTGAGTCCTTAGACCAGGGTGACTGTGGCCAGGGGCGGAGGTGTGCCTTACAGGGTATCACAGGgcacctccacccctcctctctcagtACCCCCCTGGCCTCCGCCACCACCTCTTCCACACCCCCCATGCCTCTGGGTTTTGGCTACTACAGAGGCTATCCTCTGACCATGGCCCATTACCCAAATCCCCACCCCTCCtttcccctgcctccccctcacccctacgccccccacctccacccccctcacctcctcctcaacCCAGCCAGGTTCcacaggaggaggagcaggcagCTGAGGGAGGCTGGgttgggtggaggtggaggtgaggaCGTGGGGGTTATGGGTGAGGGAAAGAGGGCCGGGGTCCGTTCCTGTCCAGCAGGGTCCGTCCCTGGTCGGTCCTGTGTCTGTGGGGGGAGTGAACACAAGCTCAGACACAAACATCGTCACAGACAGCGTGATCGTGACGgaaaggaagaagaggatgagagagtTGCAGGGTCACAGCTAAGGTCAGAGTTCACCACAGGGTCAGGAGGAAGTAGAAAGACTGGAGGACAAGGGAGTGCTGGGTTGATGGAGTCTCCACGGCAACATAGGCACGGCAAATACCCCTCTTCTTTCTTCTCTGCTTCTGCTAAACCagcctcttcatcatcatcatcagagagGCTcaaacacacacccctcacctgtCTTGGCTCCTCTCACCTGTCCTCTTTCGGGGAGGGCTGGGGGGTTCGCCAGAACCCCTGGCTGAGGAGAGGGGGGCTGGGGGCAGGATTCAGACCCCTCGATCCCACCTGGGGCACTCTGACAGAAGAGCAGAGGACAGCCGCTGtgggggggtcagagagagagtcgGGGGAGAGACACACACCCTGTCACAGCACCTTCACCCCCCCGACACACACCAACCTCTTCACCTCCTCTGCCACCAGTGGGAGGGGCATGAGGAGCGGAAGAGACAATTGGAGACCAGGGAGTCAAGACGGGTCACTGAGGAGTGAGGAGCcatcacagacagagaggagaggcacagACCCACACTATGACCTGAGCAGGAGGCAACTGAAGTGGCTGAGAACTGGTCAACGTTTTGGGGCTAAGAGAGGGCCTGGACGACCCAGGAAGAACCCTCTAGCCTCCCCTTTGGTcgcccccttcctctctcctacaaGCCAACCAAACCCTCCAACTGAGACAGACGTCAAGaacagagatagaaacagaggaagaggaggaggagattcaGTACAAGAGGTGATTGAAGCTGTGATTCAGAGCCAGAGGAGAAGACGGAAGAGGAGGCACATTGAGAAAGAGGAGGTTGAGCATCCATCTTGTCTCCAAAGTTCTGGTGAAGGTGAGCCAGTCACCCACACCCCCTCCATATGCACAGGCCAATCAGAGCTAACCCAAACTCCATCCCTAACCCCGGGCAGCCAATCAGATAAGGGAGCTGACCAGCTGCCTAGGAAGAGGTTTCAGAGGGCGGGGCTCTACTCAGATGACTACAAAACTACAGATCCCTCTCAGAACCagctgaacagagagagactggaataTACACCAGGAGAACAAGACTACAGCCTCCTGCCTGCTCCCATACATGTTGGGAAGTACCTAAGAATGAGACGTATTGACTTTCAGTTGCCCTTTGACGTCATGTGGCTCTTCAGGCACAACCAgCTCCACAAAGAGCCAGATGTTCCTCTGACCAGAGAGATCTCATCCTACCAACCAAAAGAGAAGAGCCTGTCCAGTCCCCAGACAGgggtgtccctccctccctctccccaggaGGAGTGTTCCAGTCCCAGTAAGAAGCTGTTTCCCTACCTGGACATGGAGCCTATGACCACCAGTGACAGGGTGTTCGTCCTGAGGCACCGCGTGTTCCTTTTGAGGAACTGGGAgagggtcagagacagacagatacgcctgaggagggggagagagggggaacgagagaaagatggaggaggagtTTCCAGCTATGTAGCTACTGGGGACAACAACAGCCACATCATGTCAGGTCCATGAagcaaGTCGACAAATGGCGGTGAAGAAGAAGGTTGTGTGGATTAGTGAGCCCCTTCGTGATCCCCAGTGCCCCCATAACCCCCTCAGCACCACGCCCCATCTCACTGAGAACAGACAAGAGGAGAAAAaacaggtggaggaggaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253467 lncRNA downstream 3116 8803105 ~ 8803666 (-) True G222009
TU253465 lncRNA downstream 3763 8801951 ~ 8803019 (-) True G222007
TU253432 lncRNA downstream 34849 8770564 ~ 8771933 (-) False G221988
TU253498 lncRNA upstream 13284 8852960 ~ 8912310 (-) True G222025
TU253533 lncRNA upstream 113748 8953424 ~ 8953678 (-) True G222059
TU253538 lncRNA upstream 124076 8963752 ~ 8963983 (-) True G222064
TU253540 lncRNA upstream 131800 8971476 ~ 8972335 (-) True G222066
TU253992 lncRNA upstream 145968 8985644 ~ 8987837 (-) True G222412
XM_021598339.2 mRNA downstream 103519 8699035 ~ 8703263 (-) False LOC110520892
XM_036967868.1 mRNA downstream 104163 8699035 ~ 8702619 (-) False LOC110520892
XR_005051421.1 mRNA downstream 104765 8701883 ~ 8702017 (-) True LOC118964372
XR_005051422.1 mRNA downstream 105184 8701463 ~ 8701598 (-) True LOC118964373
XM_036967794.1 mRNA downstream 311392 8466936 ~ 8495390 (-) True LOC110520844
XM_036967999.1 mRNA upstream 14139 8853815 ~ 8861170 (-) False LOC110516769
XM_036967991.1 mRNA upstream 14139 8853815 ~ 8862231 (-) True LOC110516769
XM_036967983.1 mRNA upstream 39312 8878988 ~ 8887653 (-) True LOC110520884
XM_021598328.2 mRNA upstream 72763 8912439 ~ 8921056 (-) False LOC110520883
XM_021598329.2 mRNA upstream 72763 8912439 ~ 8921058 (-) True LOC110520883
TU253420 other downstream 42898 8763119 ~ 8763884 (-) True G221986
TU253214 other downstream 283574 8503184 ~ 8523208 (-) True G221807
TU253206 other downstream 395973 8394361 ~ 8410809 (-) False G221806
TU253177 other downstream 456493 8349319 ~ 8350289 (-) True G221788
TU252035 other downstream 1233310 7558939 ~ 7573472 (-) True LOC110508494
TU253485 other upstream 14141 8853817 ~ 8949187 (-) False G222023
TU253488 other upstream 14141 8853817 ~ 8921034 (-) False G222023
TU253492 other upstream 14141 8853817 ~ 8921034 (-) False G222023
TU253493 other upstream 14141 8853817 ~ 8921589 (-) False G222023
TU253487 other upstream 39395 8879071 ~ 8949187 (-) False G222023

Expression Profile