RNA id: TCONS_00028693


Basic Information

Item Value
RNA id TCONS_00028693
length 1572
RNA type mRNA
GC content 0.49
exon number 7
gene id XLOC_014492
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 5362420 ~ 5364649 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTTCTCCTCACTCATCCGCTCACTCCTTCTCCAGGCAGAGCAGACGACGACAGCAAGACTCCTTCAAAATGATGTCTTCTTCATCCATCCGCATGTCCTCAGGAGGATCTTCTCGCCTCTCTGTCGGTGGTGGAGCCAGTCGTGTCTCAGGAGTGCGTGCTGGTAGTGTCTATGGAGGAGCAGGAGGATCCGGTGTTCGCATCTCCAGTTCTTCTGCTTCCAGATCCTACTCTGCTGGTGGGGGCGCAGGATTTGGTGGTGGTGCTGGTGCTGGCTTCAACCTGTCTGATGCCATTGACGTGCCAACAAATGAGAAAGCCACCATGCAAAACCTCAATGACCGTCTGGCCTCCTACCTGGAGAAGGTGCGCAGCCTGGAGAAGGCCAATGCAGATCTTGAGCTGAAGATCCGCCAGTTCCTGGACAGCAAGGCCACGCCTAATGCTCGTGACTACAGTGCCTACTATGCAACAATCAGTGACCTCCAGGCAAAGATCCTGCATGCTACTGGTGTAAATGGAGGCATCTACCTCAGCATTGACAATGCCAAGCTGGCTGCAGATGACTTCAGAGTCAAGTATGAGAATGAGCTGAGCATGAGGCAGTCTGTGGAAGCAGACATTGTTGGCTTGAGGAAGGTGCTGGATGAGCTCACAATGACCAGATCTGACCTGGAGTTGCAGATCGAGGGTCTGAAAGAAGAACTGATCTTCCTCAAGAAGAACCACGAGGAGGAGCTCTTGGCAGCACGCACCCAGATGAGTGGACAAGTCAATGTAGAGGTCGATGCAGCACCACAGGAAGACCTGACAAAGATCTTGGCTGATATCCGTGAGCACTACGAGGCAGTTTCTGCCAAGAACCGTAAAGATCTTGAGAGTTGGTTCCAGGCCAAGAGTGAGTCCCTCAACAAGGAAGTTGCTGTAAGCACAGAAACTCTCCAAACCTCCCGCTCTGAAATCACAGAGGTTAAGCGCACACTCCAGAGTCTTGAAATCGAACTACAGTCACAACTCAGCATGAAAGCGTCATTGGAAGGCACTCTGGCAGACACACAGGCCCGCTACACCAACATGTTGAATGGTTACCAGTTCCAGGTGAGCAGCCTGGAAGAGCAACTGATACAGCTCCGTGCTGATCTGGAGCGCCAAGGTCAAGAGTACCAGATGCTTCTGGACATCAAGACCAGACTGGAGATGGAGATTGCAGAGTACAGAAGACTGCTGGATGGAGAGGCTACTACTGTTTCCACAAGCTCAAGCACTACACGCAAAGTGGTAACCATTGTGGAAGAGGTGGTGGATGGAAAAGTGGTCAGCTCATCCTCCAAGGCCACAACCGAGACTAAAACCACTTAAAAGAAATCTTGACAAAAAGAGTTCTCAATCAGTGTGATAAGAAAACCAATAAACTGGTCTCACTGTGAATTTTTGTACTGGTCTTGTTTTGGGGAACATGATTTATACCATGTATAAAAGCAAcccatattataataaatatgaaaattagtttattaatagcAGAGTAAGTTTGCCAATTAGAAGCATAATAGAAACAAATGATTTGTAAAA

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0042074 cell migration involved in gastrulation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0009611 response to wounding biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048869 cellular developmental process biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0042060 wound healing biological_process
GO:0009790 embryo development biological_process
GO:0042383 sarcolemma cellular_component
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0045111 intermediate filament cytoskeleton cellular_component
GO:0005882 intermediate filament cellular_component
GO:0005901 caveola cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0099513 polymeric cytoskeletal fiber cellular_component
GO:0044853 plasma membrane raft cellular_component
GO:0071813 lipoprotein particle binding molecular_function
GO:0071814 protein-lipid complex binding molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0004859 phospholipase inhibitor activity molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function
GO:0055102 lipase inhibitor activity molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko02020 Two-component system
ko04260 Cardiac muscle contraction
ko04714 Thermogenesis
ko05208 Chemical carcinogenesis - reactive oxygen species
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05014 Amyotrophic lateral sclerosis
ko05016 Huntington disease
ko05020 Prion disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko05415 Diabetic cardiomyopathy
ko04932 Non-alcoholic fatty liver disease

ZFIN:

id description
ZDB-GENE-991008-6 Predicted to enable structural molecule activity. Acts upstream of or within cell migration involved in gastrulation. Predicted to be located in intermediate filament. Is expressed in EVL; embryonic structure; epidermis; epithelium; and periderm.

Ensembl:

ensembl_id ENSDART00000004812

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00028691 lncRNA downstream 3965 5357511 ~ 5358455 (-) True XLOC_014491
TCONS_00028688 lncRNA downstream 10878 5350225 ~ 5351542 (-) True XLOC_014490
TCONS_00028678 lncRNA downstream 236911 5122583 ~ 5125509 (-) True XLOC_014485
TCONS_00028676 lncRNA downstream 244511 5113276 ~ 5117909 (-) False XLOC_014485
TCONS_00030145 lncRNA downstream 268597 5089416 ~ 5093823 (-) True XLOC_014483
TCONS_00028698 lncRNA upstream 14853 5379502 ~ 5380299 (-) False XLOC_014494
TCONS_00030146 lncRNA upstream 230427 5595076 ~ 5601208 (-) False XLOC_014496
TCONS_00030147 lncRNA upstream 230427 5595076 ~ 5601213 (-) False XLOC_014496
TCONS_00030148 lncRNA upstream 231454 5596103 ~ 5601203 (-) True XLOC_014496
TCONS_00028703 lncRNA upstream 345198 5709847 ~ 5712019 (-) True XLOC_014499
TCONS_00028689 mRNA downstream 3977 5356421 ~ 5358443 (-) False XLOC_014491
TCONS_00028686 mRNA downstream 10221 5349656 ~ 5352199 (-) False XLOC_014490
TCONS_00028687 mRNA downstream 10438 5349915 ~ 5351982 (-) False XLOC_014490
TCONS_00028685 mRNA downstream 16488 5344513 ~ 5345932 (-) True XLOC_014489
TCONS_00028684 mRNA downstream 16490 5339364 ~ 5345930 (-) False XLOC_014489
TCONS_00028695 mRNA upstream 2681 5367330 ~ 5369486 (-) False XLOC_014493
TCONS_00028696 mRNA upstream 3859 5368508 ~ 5372572 (-) True XLOC_014493
TCONS_00028697 mRNA upstream 13914 5378563 ~ 5380770 (-) False XLOC_014494
TCONS_00028701 mRNA upstream 294877 5659526 ~ 5669122 (-) True XLOC_014497
TCONS_00028702 mRNA upstream 326284 5690933 ~ 5699703 (-) True XLOC_014498
TCONS_00028690 other downstream 3977 5357245 ~ 5358443 (-) False XLOC_014491
TCONS_00028664 other downstream 569087 4780991 ~ 4793333 (-) False XLOC_014480
TCONS_00028659 other downstream 881123 4481183 ~ 4481297 (-) True XLOC_014476
TCONS_00028658 other downstream 1158061 4204245 ~ 4204359 (-) True XLOC_014474
TCONS_00028646 other downstream 1436790 3919591 ~ 3925630 (-) False XLOC_014468
TCONS_00028699 other upstream 14944 5379593 ~ 5380707 (-) True XLOC_014494
TCONS_00028700 other upstream 51150 5415799 ~ 5415915 (-) True XLOC_014495
TCONS_00028706 other upstream 409272 5773921 ~ 5774035 (-) True XLOC_014501
TCONS_00028709 other upstream 478442 5843091 ~ 5843205 (-) True XLOC_014503
TCONS_00028719 other upstream 867515 6232164 ~ 6238989 (-) True XLOC_014509

Expression Profile

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