RNA id: XM_036968088.1


Basic Information

Item Value
RNA id XM_036968088.1
length 1278
RNA type mRNA
GC content 0.51
exon number 11
gene id LOC110500119
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9122222 ~ 9150991 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCGTCTGATTGGCTCAGAAAAATGGCCAGAGTCCGGTCACATGATCCTGTCAGCCAATAGGAAGGGGAGTTGGGCTTCTGTCAGGAAAAATGCTGTAGCAGGCTGGATCCTCTGGCTGACCTGAAAAAtATGGTGTCCAGTCTGAGCGAGTGGTTCTGGAATGAGCGGCTGTGGTTCCCTGAGGGGCTGGGTTGGGCTGACCTGGAGGACAAAGATGGCCGTGTTTACGCCAAGGCCAGCGACCTTTGGGTGGTGCTACCCATCGCCCTAGCCTTCCTCGTAATACGACAGATCTTCGAGAGgTTAGTGGCCACCCCACTGGCTGCTGTCATGGGGGTGAAGGAGAAAGTTCGGCTCATAGTCTCACACAACCCCACACTGGAGTCCTTCTACTGTAACGCAACCAAGAACCCCTCACAGaGTTCTATAGACAGTCTGTGTAAGCAGACAGGTTGTTCAGAGAGACAGGTGCAGAGATGGTTCAGGAGACGCAGGAACCAGGACCGACCCAGTCTACTGAAGAAGTTCAAAGaggccagTTGGAGATTCACCTTTTACCTTCTTGCTTTCATTGCTGGCCTGGCTGCCCTCATTGACaaaCCCTGGCTGTATGACTTTAAGGAGATGTGGCAGGGCTTCCCTATTCTGACTCTCCTGCCGTCTCAGTATTGGTACTATATGATAGAGCTGGGTTTCTACGTCTCTCTAATCTTCAGTGTGGCATCAGACGTCAAACGGAAAGACTTTAAGGAGCAGATGGTTCACCATATGGCCACCATCTTCCTCATCAGTTTCTCCTGGTGTGTCAACTACATCAGAGCGGGCACGCTCATCATGCTGCTGCACGACTCCTCCGACTATTTACTGGAGtCCGCTAAGATATTCATCTATGCTGGATGGAGAAACACCAGTAACTACGTCTTCTTCCTCTTCGCTGCCGTCTTCATCTTCACTAGACTCTATATCTTCCCCTTCTAcatcATTTATTCTACGTACATTTATCCAATGACTATGTACTCTCCGTTCTTTGGATACTACTTCCTGAATTTCCTTATGATGGTGCTGCAGTGTCTCCATATCTTCTGGGCCATCCTCATTCTGCGTATGGCCGTCCGCTTCCTGAGCAGCGATGAAAAGGTGGAGGACGAGAGGAGCGATAAAGAAGAGACAGACGAgtcaggggaggaagaggagggggtggagaagaAAGGTGCGGTGCAGAATGGTCACGCCGCTCACAACAACCACCGCAAGACGGAGTAATGAAAACGTGTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254013 lncRNA downstream 968 9118840 ~ 9121329 (-) False G222423
TU254042 lncRNA upstream 15295 9162159 ~ 9163737 (-) True G222437
TU254093 lncRNA upstream 30012 9176876 ~ 9219368 (-) True G222482
TU254109 lncRNA upstream 80377 9227241 ~ 9227503 (-) True G222498
TU254112 lncRNA upstream 82580 9229444 ~ 9230327 (-) True G222500
TU254134 lncRNA upstream 99189 9246053 ~ 9247523 (-) True G222517
XM_036968026.1 mRNA downstream 3860 9101425 ~ 9118437 (-) False LOC110501040
XM_036968035.1 mRNA downstream 3860 9101425 ~ 9118437 (-) False LOC110501040
XM_036968038.1 mRNA downstream 3860 9101425 ~ 9118437 (-) False LOC110501040
XM_036968064.1 mRNA downstream 3860 9101425 ~ 9118437 (-) False LOC110501040
XM_036968059.1 mRNA downstream 3861 9101425 ~ 9118436 (-) False LOC110501040
XM_036968109.1 mRNA upstream 14119 9160983 ~ 9222948 (-) False LOC110508553
XM_036968098.1 mRNA upstream 14119 9160983 ~ 9231957 (-) False LOC110508553
XM_036968106.1 mRNA upstream 14119 9160983 ~ 9231958 (-) False LOC110508553
XR_005040485.1 mRNA upstream 14119 9160983 ~ 9231958 (-) True LOC110508553
XM_036968114.1 mRNA upstream 86585 9233449 ~ 9333337 (-) False LOC110508538
TU254025 other downstream 3924 9110973 ~ 9118373 (-) True LOC110501040
TU254075 other downstream 27081 9093876 ~ 9095216 (-) True G222465
TU254073 other downstream 27161 9093180 ~ 9095136 (-) False G222465
TU253486 other downstream 173110 8938896 ~ 8949187 (-) True G222023
TU253489 other downstream 200708 8912435 ~ 8921589 (-) False G222023
TU254242 other upstream 347932 9494796 ~ 9496853 (-) False G222607
TU254262 other upstream 384310 9531174 ~ 9551240 (-) True LOC110508584
TU254285 other upstream 414881 9561745 ~ 9562965 (-) True LOC110520821
TU254309 other upstream 470761 9617625 ~ 9622934 (-) False G222662
TU254332 other upstream 525579 9672443 ~ 9673439 (-) True LOC118944443

Expression Profile