RNA id: XM_036968106.1


Basic Information

Item Value
RNA id XM_036968106.1
length 3160
RNA type mRNA
GC content 0.45
exon number 14
gene id LOC110508553
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9160983 ~ 9231958 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagagagggagacaccgGCAGACGACGTCAAAAGCTACGGTAGCCTATACACTGAGGGAAAAGAGGGGTAGCGCGGGAGGGAAACGTTAGATATTAATAAGTATATTTTAATATATGTGTTAAACCTTAAATGTCTATATAAATGAACTGATGGATTTATCAAAAGCTGTCTGCTGCAGAAATAGTTTTTAAGAATATAGCCTTGTAGCCTAATTATTGCAGACATTTGACTATTCTAACAGACAGGGCAGTACTCAGAGAGTGACTGACTGGCTTTACCGGATTTACCAAGAGTCGTGACGAGAGGATATAGCAAATAACGGATCACCAAGGCACCGGGTTGGGGATATGTGATCTGATGATCGCTTGCAAAGACGTGAGACCTTAACGGGAGCAGCAACTCCACTGATCTGTTACGGATTCGAAACCGGGAGAGGGAGCGATTGGCACAAAGAGCGGAGAACGAATCGCATTGAGCCTACTATTCCCGGAGGGAGGGTAACAGGAGACGCGCACTGAAGACAACAACGCCACGGCAAAACgtggaaaaataaacaaaatcatcTCATATTACTCTGGGAATTATTTTACAACGTGGAGTGAAGGATCTCTTGAAATCGGGGCTCCGAACACTCTCACGTCCTAAAGCTCTGGTCGCTCCTCTCCAGAGGACCACGACTCTGCTCGCACTCACCCCGCTCTTCTCACCTCGAACCCCGCAGAGAGCCTGTCGTTCTCCCCGCTGTGTTCCGATGAAGGAAGCCGATGCGATCAAGCTGTTCGTGGGGCAGATTCCTCGGAATCTAGAGGAGAAGGACCTCAAACCGATCTTTGAACAGTTCGGGAAGATCTACGAGCTGACGGTGATAAAGGACAAATACACCGGCATGCACAAAGgatGTGCATTCCTGACATACTGTGCGAGGGAGTCAGCGCTGAAGGCCCAGAGTGCTTTGCATGAGCAGAAGACGCTACCGGGGATGAACCGACCCATCCAGGTAAAACCAGCCGAcagcgaggggagaggagAAGACAGGAAGTTGTTTGTGGGCATGCTGGGTAAACAGCAGAGTGATGAAGACGTCAAGAGGCTGTTTGAGCCCTTTGGCACTATAGACGAGTGTACTGTACTACGGGGGCCAGACGGCACCAGTAAAGGTTGTGCGTTTGTGAAGTACCAGGGACATGCTGAAGCTCAGGCTGCCATTAGCACCCTGCATGGGAGCCGCACACTGCCTgGTGCGTCGTCCAGTCTGGTGGTCAAGTTTGCcgacacagagaaggagagagggctgagacGGATGCAGCAGGTGGCATCACAGCTGGGCATCTTCAGCCCCACCATGACACTTAACTTCCCTGCTTACAACGCTTACACACAGGCCGTCAGCGCACAGGCGaTTGTCCAGCAGCAAGCTCTGGTTGCTCAGTCAGCGTACCTGTCTCCTGTAGCAACTGTTGCCAGTTTACAGATGCAGCAGATGGCAGCGCTCAACGCAAACGGAATCATCGCCACGCCCATCACATCTTcctctgGTACGAATACCCCTCCAACCATCTCAGCCACGCCCGTGCCATCACTACCTCCACCTCTAGGAGTCAATGGTTACAGTCCACCAACCAATGGACAGCAAGCATCAGAAGCACTATACACCAATGGCATTCATGCGTACCAAGCCCAGAGTCCAGCATTATCTCTAGATCCTCTCCAGCAGGCGTATGCAGGCATGCAGCACTACACAGcGGCGTACCCTGCTGCCTATGGATTGGTCGGCCAGCATTTTCCACAGCAACCTACCCTGGTTGCCCAGCAACACCAGCAGccccagcaacagcagcagcgagaagGGCCGGAGGGTTGTAATATCTTTATCTACCACCTGCCTCAGGAGTTCAGTGACAGTGAGATGCTCCAGATGTTTCTGCCCTTTGGAAACGTCATCTCAGCTAAAGTCTTTGTAGACCGCGCCACCAACCAGAGCAAGTGCTTcggttTTGTGAGTTTTGACAACCCATCCAGTGCCCAGACTGCCATCCAGGCTATGAATGGGTTCCAGATCGGCATGAAGAGACTCAAGGTGCAGCTGAAACGACCTAAAGACGCCAACCGCCCCTActgaaggagagagactctgGCCATGGTGGAATcccagcgtgcattgcgccctcTGACCTACTACCTTTCTTTTGAGCGACGGggaacagcacacacacaaataccacacacacacacacacattgcactcTAAAAGGACCAAGGCACAGATATTGACCAATGTACATATTATagtcctcacacacacaaacactgacatACTTTCAAATACATATATGTCAGTAATCGTACCCTTTGAACTTGACTCAGTTTGAAAATGGTTTGAGAGGAGTTTGTCTGGAGTGTGTAGGGCAGTGAAGATCACACACATACACGACCCAGGAAGTACTTACTAAAGTCATTGATGAGATGATGAATAATGGTGATATATCACTTCTTTGGACcataacatgtcatattacatGGCTATTACATGTGTATAACATGATACAAATAGGAAGGCCTCCATTTCGTAATAAAAAAAGGAAAACAGGAAAAAATATTGAGACAAAAATGAGTAATTTAGAGAAACTTTGGAGAGAGATCCTTATGGCCTGTAAATAATTTAGTTTAAGAAGAGTAACATTTAGAAAATTACAAAAAAACGCAAAAAGAAGAGTACTTTAGATAAATCACTGAAGAATGacacaatattattattattattgttattattattattatcttcgTTAGGGGATATTGTATTAGAAATAAAGAAAAGGGAGAATCACAAACATATTTTCAATTTCTACTTAGATTTTAGGATAAATGTGGGTGGGAGGGACTGCACCTTTTCTGAGAGGTTTTAATATTTGAACAAGTTTTTATTTATTGACTAATTTATCAATTATTTTTGTTAATAGGGAGAAATGATGAAGGGTTTAAAGGGGTTACTGATTTTAGAATTTTTTTAGAGCAAAAAAGGGTCTGTTTCTGTCAGACTCTGTCAGAGTAATTATAATTATGAATGAATTATTACAACAATGATATTTATTTCTTATTTATTGAGTCTGTTTTTGATCCAATCTCtttttaagttaaaataaaaagtaTTATACATCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254013 lncRNA downstream 39654 9118840 ~ 9121329 (-) False G222423
TU254134 lncRNA upstream 14095 9246053 ~ 9247523 (-) True G222517
TU254135 lncRNA upstream 20763 9252721 ~ 9253005 (-) True G222518
TU254137 lncRNA upstream 22443 9254401 ~ 9254901 (-) True G222519
TU254140 lncRNA upstream 43247 9275205 ~ 9277305 (-) True G222522
TU254148 lncRNA upstream 61631 9293589 ~ 9293829 (-) True G222529
XM_036968081.1 mRNA downstream 9992 9122297 ~ 9150991 (-) True LOC110500119
XM_036968074.1 mRNA downstream 11786 9122222 ~ 9149197 (-) False LOC110500119
XM_036968088.1 mRNA downstream 14119 9122297 ~ 9146864 (-) False LOC110500119
XM_036968084.1 mRNA downstream 14530 9122297 ~ 9146453 (-) False LOC110500119
XM_036968064.1 mRNA downstream 42546 9101425 ~ 9118437 (-) False LOC110501040
XM_036968114.1 mRNA upstream 1491 9233449 ~ 9333337 (-) False LOC110508538
XM_036968118.1 mRNA upstream 1491 9233449 ~ 9333337 (-) True LOC110508538
XR_005040492.1 mRNA upstream 87688 9319646 ~ 9322368 (-) False LOC118945333
XR_005040491.1 mRNA upstream 87901 9319859 ~ 9322368 (-) False LOC118945333
XR_005040493.1 mRNA upstream 87901 9319859 ~ 9322368 (-) False LOC118945333
TU254025 other downstream 42610 9110973 ~ 9118373 (-) True LOC110501040
TU254075 other downstream 65767 9093876 ~ 9095216 (-) True G222465
TU254073 other downstream 65847 9093180 ~ 9095136 (-) False G222465
TU253486 other downstream 211796 8938896 ~ 8949187 (-) True G222023
TU253489 other downstream 239394 8912435 ~ 8921589 (-) False G222023
TU254242 other upstream 262838 9494796 ~ 9496853 (-) False G222607
TU254262 other upstream 299216 9531174 ~ 9551240 (-) True LOC110508584
TU254285 other upstream 329787 9561745 ~ 9562965 (-) True LOC110520821
TU254309 other upstream 385667 9617625 ~ 9622934 (-) False G222662
TU254332 other upstream 440485 9672443 ~ 9673439 (-) True LOC118944443

Expression Profile