RNA id: XM_036968149.1


Basic Information

Item Value
RNA id XM_036968149.1
length 2269
RNA type mRNA
GC content 0.54
exon number 18
gene id LOC110520816
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9347151 ~ 9371934 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCTTCACCATCTACTTCATTCTTCCGGTATTATGGCCGCTTGCAGTGTAAGGGACAACGAGTGTGAAATGTTATGATTGTGGAAAGTTTTCGGTGAAACCGGTGGATTAAGGATGCTCTTGACCGTGATGTTACGGTTTCCCGTCTGTCGGCCGTCAGTTCGGGCAGTGCTTCACTGTCAGAGGCACTTTAGCAAGATACAGGCATCCCCTGCTTTGTCTGAGCGCGTGCGGGTCTTTGAGTCTCtcagagagaggcagggacagCAGAGCACAAGCGGCGCCACGAAACAGGCCTTCAGCGTCCGATTGGCTGATGGCAGGACGGTGAATGGCACCACAGGCGTGACCACGCCCTCAATCATCGCTCAGAACTCATGTGTGAAAGGTGCTCTGGTCTGCAGGGTGAATGGAGAGCTGTGGGAGCTGCTTCGCCCCCTGGAGGCTGACTGTGAACTACAGCTGCTAGGCTTCAACACCACAGAGGGCAAACAGGCGGTGTGGAGGACAGGAGCGTGTGTTGTGGGGTGGGTGTTAGAGAGGGTGTTTGGGGTGGAAGTGTGCAGAGAGGGCGTGTCAGAGTCCGGTCTCTACTGTGACCACCTCCTGGAGAACAGTGCCCTGTCCCTATCTGAGCTAGAGGAGAGATGTAAGGAGGCCGCTGGCCAGAAGCTTCCTCTCTCCAGACTGGAGCTGAACAGGCAGGAAGTTACAGAGCTCTTCCAGGACAATGCTCTGAGACTCCAGTTGATTGAAGAACAGATGAGTGGTCCTACTGTCACAGTCTACAGGTGTGGAGACAGCATAGGAGTCTGCAATGGTCCTCTCCTCCCTAACACTGGTCTCCTCAAGGTCTTCAAGATGCtgcagGTGTCTCCCGTAACGTTGACCAATCCTGTTGGCACGTCAGGCGTGATGCGTGTGATGGGTGTGGCCTtcccaggagagagggagagggaggagtgggagagggaacAGGAGGAGACACGGAAGAGGGACCACAGACGCATCGGCAAGGACCAGGAGCTGTTCTTCTTTAATGACGTCAGTCCTGGAAGCTGCTTCTTCCTGCCTAAAGGAGCTCACATCTACAACACACTCGCTGACTTTATCAAGACTGAGTACAGGAGGCGTGGCTTCCATGAGGTTGTGACCCCTACTCTATACAGCACTGCACTGTGGGAGCGTTCGGGTCACTGGGAACactacagtgaaaacatgtttactgTGACCGGTGACACACACACCTATGCACTCAAACCCATGAACTGTCCAGCAcactgtctgaTGTTTGAGCAGCGTGTAAGGTCATGGAGGGAGCTCCCGTTGCGTTGGGCCGATTTTGGGGCACTGCATCGGAACGAGCTGTCCGGCGCTCTGGGTGGTCTCACCCGGGTCCGCAGGTTCTGCCAGGACGACGCACACATCTTCTGCACTCCtgagcagttGGAGGAGGAGATCATAGCGTGTTTGGACTTTGTGAGGAGTGTGTATCGAGTTTTTGGATTCTCCTTCCACTGTCTCCTCTCCACCCGACCTACACCCTGCCTGGGGGAGCCTGCACTGTGGGACCATGCTGAGcagCAGTTGGAGAGGAGTCTGCAGCAGTTTGGAGAGCGCTGGCAGTTCAACCCAGGAGATGGAGCGTTCTACGGGCCGAAGATTGACATCCAGATCAAGGACGCCATTGGTCGACAGCACCAGTGTGCCACCATCCAATTGGACTTCCAGCTACCAATCAGATTTGACCTGCAGTATGTGGGgggggatggagagacccACAGACCAGTGATGGTCCACAGAGCTGTTCTGGGATCACTGGAACGCATGATCGCTATATTGGCTGAGAATTTTTCAGGGAAATGGCCTCTGTGGTTGTCTCCAGCGCAGGTCATGATTATTCCTGTAGGGGGAGGTAGTGAGTCGTATGCACAACAGGTGGTCCGACAGTTCCGCGAGGCTGGCTTCATGGCTGACGCGGATGATGACCATGGTGCCACCTTAAATAAGAAGATCCGCTCTGCACAGCTGGCCCAGTACAACTACATATTTGtggtaGGTGAGAAGGAGTGTGTGAGTGGCACGGTGAGTGTAAGGACCAGAGGGGGGAAGCAGCTAGGGAGGAGACCGACAGAGAAGGTCCTGGCATCACTCACACACCTACGAGACGCACGGAGCAACCAGGATGacttctaacacacacacctgttgtgGATGAAGAATTGCTGACTGTACTTTTGTAATAAAATATAATAACTTAAATGTTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254171 lncRNA downstream 25707 9319354 ~ 9321444 (-) False LOC118945333
TU254174 lncRNA downstream 27828 9317833 ~ 9319323 (-) True G222547
TU254169 lncRNA downstream 30630 9316153 ~ 9316521 (-) True G222545
TU254161 lncRNA downstream 39672 9307226 ~ 9307479 (-) True G222540
TU254160 lncRNA downstream 40407 9306429 ~ 9306744 (-) True G222539
TU254200 lncRNA upstream 29689 9401623 ~ 9401866 (-) True G222573
TU254201 lncRNA upstream 30203 9402137 ~ 9402559 (-) True G222574
TU254203 lncRNA upstream 32733 9404667 ~ 9404887 (-) True G222576
TU254206 lncRNA upstream 34442 9406376 ~ 9406682 (-) True G222579
TU254209 lncRNA upstream 39543 9411477 ~ 9411703 (-) True G222582
XM_036968114.1 mRNA downstream 13814 9233449 ~ 9333337 (-) False LOC110508538
XM_036968118.1 mRNA downstream 13814 9233449 ~ 9333337 (-) True LOC110508538
XR_005040492.1 mRNA downstream 24783 9319646 ~ 9322368 (-) False LOC118945333
XR_005040491.1 mRNA downstream 24783 9319859 ~ 9322368 (-) False LOC118945333
XR_005040493.1 mRNA downstream 24783 9319859 ~ 9322368 (-) False LOC118945333
XR_005040494.1 mRNA upstream 4565 9376499 ~ 9390272 (-) False rprd2b
XM_021589148.2 mRNA upstream 4566 9376500 ~ 9390272 (-) False rprd2b
XM_021589157.2 mRNA upstream 4566 9376500 ~ 9390272 (-) False rprd2b
XM_021589164.2 mRNA upstream 4566 9376500 ~ 9390272 (-) True rprd2b
XM_021589177.2 mRNA upstream 18353 9390287 ~ 9401122 (-) True LOC110508575
TU254025 other downstream 228778 9110973 ~ 9118373 (-) True LOC110501040
TU254075 other downstream 251935 9093876 ~ 9095216 (-) True G222465
TU254073 other downstream 252015 9093180 ~ 9095136 (-) False G222465
TU253486 other downstream 397964 8938896 ~ 8949187 (-) True G222023
TU253489 other downstream 425562 8912435 ~ 8921589 (-) False G222023
TU254242 other upstream 122862 9494796 ~ 9496853 (-) False G222607
TU254262 other upstream 159240 9531174 ~ 9551240 (-) True LOC110508584
TU254285 other upstream 189811 9561745 ~ 9562965 (-) True LOC110520821
TU254309 other upstream 245691 9617625 ~ 9622934 (-) False G222662
TU254332 other upstream 300509 9672443 ~ 9673439 (-) True LOC118944443

Expression Profile