RNA id: TU254119


Basic Information

Item Value
RNA id TU254119
length 1352
lncRNA type sense_over
GC content 0.48
exon number 3
gene id LOC110520816
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9347151 ~ 9371934 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccctaccccttTCTCATCACATCTTTCTCacttccctcaccctctctctcccttgctctctttcaccctttctctcgctctcaggggggatggagagacccACAGACCAGTGATGGTCCACAGAGCTGTTCTGGGATCACTGGAACGCATGATCGCTATATTGGCTGAGAATTTTTCAGGGAAATGGCCTCTGTGGTTGTCTCCAGCGCAGGTCATGATTATTCCTGTAGGGGGAGGTAGTGAGTCGTATGCACAACAGGTCAGGACTCATAATATCAGATCTGGGGCCATatgtatcaagtgtctcagagtagaagtgctgatttagggtcagttttgcattttggATCTCAATTCTTAAGATTAAATGAAAAGGAAgaacctggtcctagatcagcactcctgctctgaGACACATTATACACATGTCCCTTGTACTGCAGGCTGAAatcaacccccccctcccccccatacACTCACACACGCGACCAAACACAACATGACTCAGCACACATCAAAAGCTGTACCCCTCAATGACTCCAGAGGTCGAAGGCTAATCCAACACTGTACCCATACACGGTTCATGACTCTGAAAAGGACTTGATTTGAGGTTAATTTTGATCaggttttcatttatttaacacATGGGAACCAACAATGAAACAAAGGTAGGTACGTACATGCCACTACTCACATATCAATATATTCTACAAGTTCCATCTGCCACATGATTAATGAGCCAGCAGCAGGTAAGACCAGACACGGGAGATAACATGGAATATAGACATGTAATGTTTCTGAGGCCTTCATCAGGACACGGCTCCTGTTTCTGTCAATACATCCTCCTGTATGTAATGCGCATGTAGCCCCAGGGGAGGAGAATCTATCAACACTGCTGATCTGGGGTCTGTCATGATGATACATAGACAGGTAATACAGCCACCAGTGTCTCGGCCCTCATGGTGGATTTTAAAAGGTGCCGTCCTTACTGGTATTCTACCGTAGCCTGGTTCCTGTCTCCTCTACCACCACTGTGAGTGATGTGTGTTTTGCTCTTGTTAAGGTGGTCCGACAGTTCCGCGAGGCTGGCTTCATGGCTGACGCGGATGATGACCATGGTGCCACCTTAAATAAGAAGATCCGCTCTGCACAGCTGGCCCAGTACAACTACATATTTGtggtaGGTGAGAAGGAGTGTGTGAGTGGCACGGTGAGTGTAAGGACCAGAGGGGGGAAGCAGCTAGGGAGGAGACCGACAGAGAAGGTCCTGGCATCACTCACACACCTACGAGACGCACGGAGCAACCAGGATGacttctaacacacacacctgttgtgGATGAAGAATTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254171 lncRNA downstream 25750 9319354 ~ 9321444 (-) False LOC118945333
TU254174 lncRNA downstream 27871 9317833 ~ 9319323 (-) True G222547
TU254169 lncRNA downstream 30673 9316153 ~ 9316521 (-) True G222545
TU254161 lncRNA downstream 39715 9307226 ~ 9307479 (-) True G222540
TU254160 lncRNA downstream 40450 9306429 ~ 9306744 (-) True G222539
TU254200 lncRNA upstream 52851 9401623 ~ 9401866 (-) True G222573
TU254201 lncRNA upstream 53365 9402137 ~ 9402559 (-) True G222574
TU254203 lncRNA upstream 55895 9404667 ~ 9404887 (-) True G222576
TU254206 lncRNA upstream 57604 9406376 ~ 9406682 (-) True G222579
TU254209 lncRNA upstream 62705 9411477 ~ 9411703 (-) True G222582
XM_036968114.1 mRNA downstream 13857 9233449 ~ 9333337 (-) False LOC110508538
XM_036968118.1 mRNA downstream 13857 9233449 ~ 9333337 (-) True LOC110508538
XR_005040492.1 mRNA downstream 24826 9319646 ~ 9322368 (-) False LOC118945333
XR_005040491.1 mRNA downstream 24826 9319859 ~ 9322368 (-) False LOC118945333
XR_005040493.1 mRNA downstream 24826 9319859 ~ 9322368 (-) False LOC118945333
XR_005040494.1 mRNA upstream 27727 9376499 ~ 9390272 (-) False rprd2b
XM_021589148.2 mRNA upstream 27728 9376500 ~ 9390272 (-) False rprd2b
XM_021589157.2 mRNA upstream 27728 9376500 ~ 9390272 (-) False rprd2b
XM_021589164.2 mRNA upstream 27728 9376500 ~ 9390272 (-) True rprd2b
XM_021589177.2 mRNA upstream 41515 9390287 ~ 9401122 (-) True LOC110508575
TU254025 other downstream 228821 9110973 ~ 9118373 (-) True LOC110501040
TU254075 other downstream 251978 9093876 ~ 9095216 (-) True G222465
TU254073 other downstream 252058 9093180 ~ 9095136 (-) False G222465
TU253486 other downstream 398007 8938896 ~ 8949187 (-) True G222023
TU253489 other downstream 425605 8912435 ~ 8921589 (-) False G222023
TU254242 other upstream 146024 9494796 ~ 9496853 (-) False G222607
TU254262 other upstream 182402 9531174 ~ 9551240 (-) True LOC110508584
TU254285 other upstream 212973 9561745 ~ 9562965 (-) True LOC110520821
TU254309 other upstream 268853 9617625 ~ 9622934 (-) False G222662
TU254332 other upstream 323671 9672443 ~ 9673439 (-) True LOC118944443

Expression Profile