RNA id: XR_005040494.1


Basic Information

Item Value
RNA id XR_005040494.1
length 4309
RNA type mRNA
GC content 0.58
exon number 11
gene id rprd2b
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9376499 ~ 9390272 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAATGAAAGCTTTATACATTTGtgcactttttaaaattattttcagCTGCTGCATTGGATTTGTAACACAGTGAGAGGTGACATTTTATAATGCTTGCGATTGGATGCAACCAACTTTAAACATACAGGCAGGCCCCTTTCGGGTTGTAAATATTGGTCAGACTGTTGGAGTTTCCTGCCCTTCCAACTGTTATTAGGTCAGTTTTCAGAATCTGACCCTAGATCTGTAGGCGTGTCTCCTCTCGCCTGTCTGTCACACTTTTGCTACCTTCATGACTCATTGCGATGTCCGTGTCTGCAGTACCAGAGAGGACTGGAAAAATGGCGGCGGGTTCTGGAGCTGTTAGCGGCCATGGTGGCCGCGGCGCTTTGGAGGCCACCCTGGACCGCAGATTCCAAGGAGTATCCAACACTATGGAGTCTATACAGGGACTGTCGACCTGGTGCATTGAAAATAAAAAGTATCACAGCCTTATCGTTCGGTACTGGATGAAGTGGCTCAAGAAATcGGACACCAACCACCGCCTGAATCTGTTCTATCTAGCCAATGATGTAATACAGAACTGCAAGAGAAAGAACGCCATCGTCTACCGCTCAGCCTTCGCTGAGGTGCTCCCCAACGCTGCACTAATGGTCAAAGACCCGAAGGTGCGTAAGTCAGTGGAGCGAATCTTCACTATCTGGGAGGAGAGAAACGTCTATCCTGAGGAACTCATCACTCAGCTCAAAGCCAACCTggccaagaaggagagagagagggagaaagagaaggctaAAGAGATGCCTCCTCCGCCAGCCCCAGTCAACCCCAAAGCTGCCCTGAAGTCCAAGATTGTGGCTGATTTCATAccccaGTCGTTCATCGAGCAGCTGGCAGGCTTCAAacgggtggtggaggaggaggagctgaggGAGACCCAGCTGACAGCTCTCAGAGTGGACGTCTGCAGCACGGAggccctcaagagactgaaagACAAGGCCGGAGGGAACAAGTTTGCCAAGGACTTTGAAGAGGGCAGTCAGAAGCTGCAGGAGTTTGTCAGTTTCCTGGAGAACCAGATGCCTGTAGGGCCCCCTCTGCTGGAGGCTCTAGGAAACGCAGACGTCTTCTATGAGATGCAATACAAGGAAGTTAAGATCGTGGCCAGCGCCTACAAAACCTTTGCCAACCGCGTGGTCAACCTCAAACGTAAACTGGATGCCCTCAAGTCCTCCCTTCCCGGTCCCGAGgactctcccatcccctccccctcTGAGGACGCTCCCTCACCCACCGGCTCTGACTCCCCCTTTCTGGGGCTGGGAGGAGACCAAGGGGGTAGGCTGGGCTTTGACCCGGACCTGGATGGGAGTGCCATGGACGAGAGGGACATGGGGGTtgtgagagagggggacaacaGAGATGTGGAAGACATGGATCTGTCTGAGGAGGACATGGAGACAGCCAACACAGCAGAGAAGCAGTTGTCATCAGCCACCGTTTCCAAGGTGACCAGCTCCAAGACCGCAGCGAAACCCGCCCCTGTCACACTCATTCGAACCTCCACCGAATCCCCTCTCAAAAAGGCAGCCTCGTCTACCCCCACGCCAGTGACCCCCAGCACCCCTACAAGCGCGGGTGTGAGTGGTCCTAGCGGTCCGACCGCTCCTCTGGGAATGAACCTGGCCAATGTAGACCTGGGCAAGATCAGCTCCATACTGAGCAGTATCACATCAGCCATGAAGAACacagcagCCAGCCCTGTGTCTCGCCCCTCCCCTGGAACTCCCACCACCCCCTCTGGCCAATCATCTTCCTCCAAAACCCCAGTTGGCCCCACCCCTCCTAGCCCAGCCCTGGCCAGCATCCTGTCCAGAGTGAACGTCACCCCTGAAGGCATCCTCAACGCCCTGTCAAAGACCCAAACACAGAgtCTGTCCTCTCTGCTGAGGTCTGGtagctcctcctcctctgccccctcctcccATGCCTCCCCAGACTCCTCAGCAGCCAAGGGCCCCcccacacccaccactcctagcaACACCAAACCCCCCCTGACCAACAGTCTCAAACGAGACACAcctgagaggagcagaggagccaGGGATTGGGAGAAAAACCGAGaggcctcccctcctcctcctcctcctcctcctccctccctccctagccgctctgtctctcctcccagcCTAGAGTCTAAGATCAACCGTTTCCTCCAGGGGAACCCAGGGTTCAGTCTGGGCCTGGGGGATGGGAGCCCTCTGCTGGGGGGAGACGGGGTAGACGGGACCCCTGTCAGGGATGAGAGCGGGGGCACCCCCACCCAGGACGAAATCATGGACACACCAGGGGGTGTCTCCTCCGACCCCCTTGGCCTCAACAGTGACCCCAAGAGCTTAGGCTCATCCATAGGTCATGATCTTTCACCCACGGCCTACCGCAGTGACCCTTGGGACGCCGTCATCACCCCAACAGGAAGCAGCAGCGACGTggacttcctctcttcctcttctcgtTTCCAAGGCTACGGAGCGGGGAAGAAGGCCGCCAAGCTGAAGGAGGAAGATTCGAAGAGGAAGATTAGCTCTTCATCACTGGGAAGCAGCAAGGTGAAGAAGGATGGACAGAACAGTCACGGGAACAACAGATCagttgaaggagagaggagagcgtcCATAGGTTCTCGCAAGACCAGCAGCGGGTCAGAGGAGGGAGGAATGAGTGGAACGAGGGATGaaaagggaaagaggagaggagaggatggtgggGGCTCATCTGACGGGGAGGGGGGGCAGTACCACCGTATTGAGACGCTGGTGTCGCCTTGCACAGAGGGAGCACCTTTCCAATCACTGGGGGGCTTCTCAAACCGCCAGCCAACCGGAGAGCGCATCCAGACGGTGGAAAGTATCCGCGTGATTGGACAAGGGCTGCGTCGCGGGGGTGGAGAAGGGGGGAGGCCAGGCGGAGGAATGTGGTACGACGAGGAAGGGTACCTGGATACCCAGCCCCCCTCACCTTCCCCTCAGGGCGGCTCTGACGACATGACTTCACCCACCATGCCTCCCCCGACCTCACACCACCaccttcctcctcatcctcattcTAATCACCCTCCCCACCCTCATCCGCACGGCCCCCCACCCCAGTTTCAGATGCCCCCCTACCATGGGGAGAACCCCCAGGGTCCCCTCCCCTCACACCTCCACCatcacccccctcctcccttcttcaactcccctcctccacccatcccacgccctccaccccctcccatGCCCCAGCTCCCTCCACCCCCGCGCAACTTCCTCCCCCCCTCGGCAGTCATGGTAGGCGGGGTTCTAGTCCCCATTGACCGCCAactgcccctccctccccaggtCCGCCCAGACGGAGGAGACCgaggggggatgggagggggACCCAGGGGGGGTAAAGGTGGTCCCACTCCCCTCATGTCCTCTCTGTTAGGGGAGCCCCCTAAGATGCCTCGTCCCGGCACAGTCAAAGAGCATTTCACTCCCCGCCACGCACCCCCTCTCCACCGCCCCGGCACCCCCGGTGCCCCGCCTCCCTTATTGGGCCGTGTCAAGGATGGCATcaacctccctcctccacccccctcctcctccacccctccctctccctcaggcGACCCCCTGCTTCCTCGCCCCCAAGCTCCTCCGCTCCAGCACCCTCCAGCTAGCCCGCCTGCCCAGCCCCGacaccccaaccccaaccatcCCCACCGTCCCTCGCCGTCCCTCCTGCGCCTATCCTCCCCCAACCCCCGCCCCCCCCATCAACTCCACCCCCCAGAGACCTCTACTCCACCCTCGCGGCCCCCCTGTCCACCCGCACCTAAACCGAGAGCCACCCATGTTCCGCGGGGGCAAGCGTCCTGGCCCTCCATTCGGCGGGGGCCGAGGAGGTGCCTTCTGCCCCCCCAAGAGACCTTTCTTACCCCCACGCTATTGAAATGTTAACCATGACAAGCTGAATGAAAAGCGACCCACACACCTAGCTACCCAACACGGGGAGAAGATGTGTAGAACCCTTATGGAGCAACAATGTTCTCAGCTTCCCCTCACTAAAGCAGTGAGGGAGTAATGGAGGTGTGAACTAGAAGGAAGACGACAAGCACAGATCaaatagaaacagaaacaggtgGTTATTCTATTTCACTAAAATTCTACTTACCTCTGGTATTGTGTGAATAAGCTGATATAAACActttcagagagaaagagggatagatggatgggaggggctggagagatgggaggggctggagagatggaaggggctggagagatggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254119 lncRNA downstream 27727 9347194 ~ 9348772 (-) True LOC110520816
TU254171 lncRNA downstream 55055 9319354 ~ 9321444 (-) False LOC118945333
TU254174 lncRNA downstream 57176 9317833 ~ 9319323 (-) True G222547
TU254169 lncRNA downstream 59978 9316153 ~ 9316521 (-) True G222545
TU254161 lncRNA downstream 69020 9307226 ~ 9307479 (-) True G222540
TU254200 lncRNA upstream 11351 9401623 ~ 9401866 (-) True G222573
TU254201 lncRNA upstream 11865 9402137 ~ 9402559 (-) True G222574
TU254203 lncRNA upstream 14395 9404667 ~ 9404887 (-) True G222576
TU254206 lncRNA upstream 16104 9406376 ~ 9406682 (-) True G222579
TU254209 lncRNA upstream 21205 9411477 ~ 9411703 (-) True G222582
XM_036968149.1 mRNA downstream 4565 9347151 ~ 9371934 (-) False LOC110520816
XM_036968114.1 mRNA downstream 43162 9233449 ~ 9333337 (-) False LOC110508538
XM_036968118.1 mRNA downstream 43162 9233449 ~ 9333337 (-) True LOC110508538
XR_005040492.1 mRNA downstream 54131 9319646 ~ 9322368 (-) False LOC118945333
XR_005040491.1 mRNA downstream 54131 9319859 ~ 9322368 (-) False LOC118945333
XM_021589177.2 mRNA upstream 15 9390287 ~ 9401122 (-) True LOC110508575
XM_021589190.2 mRNA upstream 55992 9446264 ~ 9451249 (-) True LOC110508582
XM_021589228.2 mRNA upstream 125636 9515908 ~ 9525313 (-) False LOC110508594
XM_036968185.1 mRNA upstream 125636 9515908 ~ 9525313 (-) True LOC110508594
XM_021589204.2 mRNA upstream 138602 9528874 ~ 9534145 (-) False LOC110508584
TU254025 other downstream 258126 9110973 ~ 9118373 (-) True LOC110501040
TU254075 other downstream 281283 9093876 ~ 9095216 (-) True G222465
TU254073 other downstream 281363 9093180 ~ 9095136 (-) False G222465
TU253486 other downstream 427312 8938896 ~ 8949187 (-) True G222023
TU253489 other downstream 454910 8912435 ~ 8921589 (-) False G222023
TU254242 other upstream 104524 9494796 ~ 9496853 (-) False G222607
TU254262 other upstream 140902 9531174 ~ 9551240 (-) True LOC110508584
TU254285 other upstream 171473 9561745 ~ 9562965 (-) True LOC110520821
TU254309 other upstream 227353 9617625 ~ 9622934 (-) False G222662
TU254332 other upstream 282171 9672443 ~ 9673439 (-) True LOC118944443

Expression Profile