RNA id: XM_021589190.2


Basic Information

Item Value
RNA id XM_021589190.2
length 1971
RNA type mRNA
GC content 0.54
exon number 6
gene id LOC110508582
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9446264 ~ 9451249 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGTGGAGATAGAAAGAACTAGCAAAGAGGCACACCAATGAAGGTCCGGTGATCGCGAGAGGAAGGAGACTGCCGACCTGATGTTCCAACGAGTGTGAGACAAATATCGCCAAGTGGGTTACAGAGATAGACGTTATCAAGGCCGTTTCTGGCAACCGTGGCCTGTTCTACTGCTGTTATTTTGTTGCAATATTTCAGTGATGCAATCACAGGGCAGCACTTCCTCCCAGCCCTCTGTTGATTCACTGAGCTCCAGTGACAGCTACCTGTTCAACCACTCTGAGCAGGCGGAGGATGACACTGATGTCTTCCTGTCTGAACGCTCCCCCGCCGTCATCCTCGGCACTGGGGGCATGGTCAGGGGCAACGGGAGTGCCGGGGCAGAGAGTCCCGAGTCCCAGTGGGCGTGTGACGGCTTCACTGACCGCGAGGAGGAGGAGTCACAGGGTTCAGAGGTTACTGGAGGTCACCCCAGGGTCACAgctgagagacagagaacaattgagacagagagagagaagacagagggagatctGCTCTTTGCCCAGAAGtgtgCTGAGCTGCAGGGGTTTGTAAGGCCCCTACTGGAGCTGCTGAATGGACTGAAGGGGGGACGATTTGACCGTGGTCTGAGTAGTTTCCAGCAGAGTGCAGCCATGGACCGCATCCAGAGGATCGTAGGGGTCTTACGGAGACCCAGCATCGGGGAAAAGTATATGAACACTCTTCTCCAGGTGGAGACGATGCTGAAGATGTGGTTTCCACAGGTGTCCCCCTTGGCCCCACCTACTGCCCCTACCCtcttcccccctcacctctccccccgGGACAGCCCCAGCAGCACCCCCCCACACAGGCACAGAGACCAGTCGCACATCCCTGTGAAGaagcGCAGACTGAGTTGGTCAGACACAGACTCTGACACCCCTCCTCCTGTACTCTTTAAGAGGCTCAACGCCagtggaggagagaagatggggaaggaggggggagaggtccCCTATGCAACTTCAGGGGTACCCCCACACCCCCAGGACCCCACCAGCAAccaagagaatgagagaaaggaaGATGAGGACagcaaagagggagagggagagtcatCGAGCAACAAAGCGGGGCTCTGTTCTGAGCCCGGTCCCACCTCGGTCCTTGTAGTGCCCATCCTTTCTCCCTGGAAAGCAATGGAGGGGAAACAGCTGCTGCCTGTCATGCCACCTCCCACCACCAGGGGCAGTCCAGCCATGCAGGACAGCGTAATCTCTTCCACCACGCCCTTCAACAACCTCCAAAGCCAGCAGCAGCCAATCGGGTGCCAAAGCCAGCCTGTTGCCGGGAAGACTGGGAAAAAGACCGTAAAGACCTGTCAGTGTCGGGTCCAGGCTCATTCAATCACGGCAAAGCCTTTGAAAAGGGTGGAGTGTAAGAGCAGGGTTAACCCCGCCCCTTTATAGACCTGATGCACTGAGCACACTCCGCCCAGCAGGCTAGTGTGACTACGTCAACATGCTAAAGCTGCTGTGATAGGGAGAGTCAGGGGTAGAAATGGGCTGCAGTGCAAACACTATGTTtagcccctcagccctctcaCTAGCCACTctcccttgggggaatccccttTGAAACCGGATGCAGTTTGATTGCCATCTTAAGTGGAGGTCCAATTCACTAACGTTGTCCCCTCGGCTCTCAATTTAGCTCGAGGAAGCGAGTGAAGAACTTTGGTCACTTGTGGGGTTTATATGACCCACAATTCAATGCAAATTGTAGTCATGTATCATACTCCGGTGGCCGCGAATGTCACGTCACTCACCACGGCTGCATTTTCGGCCTGTCAGACAAAATGATGATtctggggcaaaaaagtatttagtcagccaccaattatgcaagttctcccacttaaaaagatgaggcctgtaattttcatcatagatacacttgaactatgacagacaaaattagaaagaa

Function

GO: NA

KEGG:

id description
K21599 CIART, CHRONO, GM129; circadian-associated transcriptional repressor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254128 lncRNA downstream 562 9445037 ~ 9445702 (-) True G222511
TU254122 lncRNA downstream 1412 9441801 ~ 9444852 (-) True G222505
TU254213 lncRNA downstream 21799 9424179 ~ 9424465 (-) True G222586
TU254209 lncRNA downstream 34561 9411477 ~ 9411703 (-) True G222582
TU254206 lncRNA downstream 39582 9406376 ~ 9406682 (-) True G222579
TU254234 lncRNA upstream 22791 9474040 ~ 9476900 (-) True G222600
TU254246 lncRNA upstream 44577 9495826 ~ 9496853 (-) True G222607
TU254298 lncRNA upstream 143771 9595020 ~ 9595330 (-) True G222657
TU254299 lncRNA upstream 144456 9595705 ~ 9599657 (-) True G222658
TU254305 lncRNA upstream 161415 9612664 ~ 9623056 (-) True G222661
XM_021589177.2 mRNA downstream 45142 9390287 ~ 9401122 (-) True LOC110508575
XR_005040494.1 mRNA downstream 55992 9376499 ~ 9390272 (-) False rprd2b
XM_021589148.2 mRNA downstream 55992 9376500 ~ 9390272 (-) False rprd2b
XM_021589157.2 mRNA downstream 55992 9376500 ~ 9390272 (-) False rprd2b
XM_021589164.2 mRNA downstream 55992 9376500 ~ 9390272 (-) True rprd2b
XM_021589228.2 mRNA upstream 64659 9515908 ~ 9525313 (-) False LOC110508594
XM_036968185.1 mRNA upstream 64659 9515908 ~ 9525313 (-) True LOC110508594
XM_021589204.2 mRNA upstream 77625 9528874 ~ 9534145 (-) False LOC110508584
XM_021589213.2 mRNA upstream 77625 9528874 ~ 9551641 (-) False LOC110508584
XM_036968208.1 mRNA upstream 77625 9528874 ~ 9551643 (-) False LOC110508584
TU254025 other downstream 327891 9110973 ~ 9118373 (-) True LOC110501040
TU254075 other downstream 351048 9093876 ~ 9095216 (-) True G222465
TU254073 other downstream 351128 9093180 ~ 9095136 (-) False G222465
TU253486 other downstream 497077 8938896 ~ 8949187 (-) True G222023
TU253489 other downstream 524675 8912435 ~ 8921589 (-) False G222023
TU254242 other upstream 43547 9494796 ~ 9496853 (-) False G222607
TU254262 other upstream 79925 9531174 ~ 9551240 (-) True LOC110508584
TU254285 other upstream 110496 9561745 ~ 9562965 (-) True LOC110520821
TU254309 other upstream 166376 9617625 ~ 9622934 (-) False G222662
TU254332 other upstream 221194 9672443 ~ 9673439 (-) True LOC118944443

Expression Profile