RNA id: XM_036968178.1


Basic Information

Item Value
RNA id XM_036968178.1
length 4132
RNA type mRNA
GC content 0.55
exon number 25
gene id LOC110520820
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9490333 ~ 9508263 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGATATTTTAAACAGATTGTACAGGATGGAGGTGGAGGGCTGGGACTCTGGTCTGGAGGAGGAGCTGGGTGTGTCTCTGGAGGAGCTGAGTAAGTggattgaggaggaggtggagaggagcgAGGCAGTCCGCCAGAGGAAGGCCCAGCTGGCTGAGCTCAAAGAATGGGTGGAGcagaaagagaaggaagaggaggtggtggaCAAACTCTTCAACAATGCCaaccagTCCATAGTGGAGTGTGAGGCGCTGGTGAAGTCCACCTACAGTAAAATGGGTCTGGTCTACAAGGAGAGTTCTTCAGAGGACGAGGGTGGAGTGGGAGGGTTTCAGTCCTCTGATGTCATAGAAATtgacgatgatgatgacgatgatgatgtcATCGCTGTGGGCTTACTGGTTCCACCCAAGAAACCTGGGATGCCTGTCCATGATGCAATGTTTAAGGAGGCGTCGGCAGCTCTCCAGCGTTCCTCCCAGCAGGTGTTGAAGCTGGCCCAGACAGTCAACAAGAACTCTTCTTCCGGGCCTGCTATACAACAGACAGGTGGCCCAGTGCCCATGCCAGCAGTGTTTGTGTCCCAGGCCACACCCAGGAACACACCCACCCAGCCTAACCCCTCCCTGAAGGATGATGAAATCAGACTGGAGATGAGTCTTCTGGGAAAGAAACGCACCAAGACCTGGCACAGTGGAATGCTCATCGCCATCAACCCTGTCGgtaaTGGTTACAGTAAGTACAAGGTAAAGTTTGAGAACAAGGGGAAGAGTCTACTCTCTGGGAACCACATAGCGTTTCACTACCACCCCACCCTGGAGAGGCTATACGTGGGAGCCAGGGTGGTCGCCAAGTACAAGGACGGCAACCAGGTCTGGCTCTACGCTGGCATCGTGGCAGAGATGCCCAACAACAAGAACCGCATGAGGTTCCTGATCTTCTTTGACGACGGTTATGCCTCCTACGTGACCCTGCCTGAGCTCTATCCTGTCTGCAGACCAATGAAGCGTACATGGGAGGACATAGAGGATGCATCGTGTAAAGACTTCATAGAGGAATATATAACATCATACCCCAACAGGCCCATGGTGCTGCTGAAGGCAGGCCAGGTCAtcaagacagagtgggaggggacGTGGTGGAGGAGCAGAGTGGAGGAGGTGGACGGCAGCCTCGTCAAGATCCTCTTCCTGGATGACAAGCGTAGTGAGTGGATCTACCGCGGTTCAACCAGGCTGGAGCCCATGTTCAACCTGAAGACCAACTGTGCCAACACCCAGGAGAAGAAGATGGCTGGCCAGCAGAGGACAcgccccagcatgggagcaTTGAGGACCAAGGGCCCCGTGGTCCAGTATCACAGTGGGGGGAACACCATAACCCCCAGTGGGACCCCCACTAAAtccccccatcccctctccccaccctcctccatccctcctacaCCCTCCCAGCCCAATCAGCTTGCACGAACAGATCCTAAGTATCAGATGGCTAAGAAGAGTACTTCTCCATACATTCCCACGCCAGGAGGCTCTCGCACTGGATTGGCCAGTAACAGCCACGCCCCTAAAGCCATGCAGCCCCAACCTCCAACTGGTTCTCCTGGAAACTCATCCAgAATGTATGTCCTTCAGACTGGCAACATCCAGACTCTCACGTCCCTACAGCCTATCCAACACCAGCAGCAgtctctgccccctcctccccAAGCCCCTCCCACCGCCCCCGCACCTGCAGTGACCCCATACACCTTCAGTAACGACCGGATTCCCCACGAGCCCTCGTACCGCGCCCCCACAGACCGCATCTTCTACCTGCCTCACACCTGCCAGCCTGCTTGTCTCAACCGTATCCGGCCCTCCAGACCAGATATGCACCGGGGCAGGAACCCCCTGCTCACCCCTCTACTGTACGAGTTCAGACGCATGACGGGCCGAAGGAGAGTCAACCGCAAGATGTCGTTCCATGTGATCTACAAGTCTCCTTGTGGGCTGTGTCTGCGCAGCATGGCAGAGATCCAGCGCTACCTGTTTCAGACGCGCTGTGACTTCATCTTCCTGGAGATGTTCTGCTTGGACCCCTATGTCCTGGTCGACCGGCGCTTCCAGCCCCAGAAGCCTTACTACTACATTCGAGACATCACCAACGGCCGCGAGGACATTCCCCTGTCCTGCGTCAACGAGATCGACATCACACCACCCCCCGACGTGGCCTACAGTAAGGAGCGTATCCCTGAAGACGGAGTGTTCATCAACACCAGTCCTGAGTTCCTGGTGGGCTGTGACTGTACCGACGGCTGCAGGGACAAGTCCAAGTGTTCATGTCACCAGCTGACCCTGCAGGCCACAGCCTGTACCCCTGGAGCACAGATCAACCACACGGCTGGATACACACAAAAGAGACTGGAGGAGTGTTTGCCCACCGGGATTTATGAGTGTAATAAGCGTTGTAAGTGCTGCAGTCAGATGTGTACTAACCGTCTGGTGCAGCACGGTCTGCAGGTGAGGCTGCAGCTCTTTAAGACCCAGAACAAAGGCTGGGGCATCCGCTGTCTGGACGACGTGGCCAAGGGGTCCTTCGTCTGTATCTACGCAGgTAAGATTCTGACAGATGACTTTGCGGACAAGGAGGGTCTGGAGATGGGTGATGAGTACTTTGCTAACCTGGACCACATAGAGAGTGTGGAGAACTTCAAGGAAGGGTATGAGAGTGAGGCCCACTGTTCAGACAGTGACGGGAGCGGGGTGGACATGTCCAGGCTAAAGAACCCCCCCTCGTCCTCCCTGGCTTTGCAGAACAAGACCCTTCCCAAACCCCCCCAGAGAACCAATGCCGCCAACCCCGCTGGCAAAGCGCGGGGTGCTGGTGGCGACTCCTCTAAGGATGGGGATAGTGATGAAGAGTCGAACAATGACAAAAGTTCAGACGACACGTTTGTGAAGGACCCCTACTATAGCTCCAGCTCTGTGTGGAGGAGCTACACCACCCGTCGCCAGGCCAAGGGCGTCATGGAAGGGAGCCAGGacagtaaggatgggatgagtgtGTCAGTGGGGGGGAAGGAGGACAGGAAGCCGCCCCCCATGCCAGAGGAGAGTGGGAAGAGTAAAGTAGCGTCCTGGCTCACCAACCAACCCTCTACCTCCCAGGCCACCGTTAAGATGGAGGGACTGAAGATAGAGAAGAAggtaggggagggggggGAGCCCGGAGACCAGAAAAGTCAACAATCAGTgaagacggagggagggaagagacaggATGTGATGACGCTGTCGGACAGTGATGACGTCCAGACCATCAGCTCTGGATCTGATgacaacaaggagagagagaaacgcaCACAGGGTGAAgatgggggagGTGCGGTGAAGAGGCAGGTGGCTGTGAAGTCCACGCGAGGCATTGCTCTGAAGAACTCCCATGGCCTGATGGTGAAGACTGGAGGGGCTGGGATGGGGCCAGGGGGAGGCCCGGGGGGCCACGGAGGGGCACAGGGTAAGGGTGGGGACGGGGGAGACAGTGGACCTAAAAACACACGGCAGTTCTTCGATGGCGAGGAGTCCTGCTACATCATCGACGCCAAGCTGGAGGGCAACCTGGGGCGCTACCTCAACCATAGCTGCAGTGCTAACCTGTTTGTCCAGAATGTGTTTGTAGACACACACGATCTGCGTTTCCCCTGGGTAGCCTTCTTCGCCAGCAAgcgTATCCGGGCGGGGACAGAGTTGACATGGGACTATAACTACGAGGTTGGCAGTGTGGAGGGAAAGGAGCTACTGTGCTGCTGTGGCTCAACAGAGTGCAGAGGAAGACTGCTATAAGAGACCACCCTCTATACCTCCAtctcatccctctatttcttcATCTCCTCTCTGAGTGTAGAAGAAGCCTGCTGTAAGGACATACTATGCTAGATGGGACACCTGCACCCACAAGTCTCTGTCCATGTGTCTCTTTTgttcctccccctctatcttttTTTCTGAATTGTTTGGATGCCTATTGCTGATGTATTGTAATTCTTTACTGTTTTGTCTGAATTCCCAGTTGTATTTGACTGTCTGTGAATTCAGAAACAAACTGTGCTCTTCTCACAACTGAATAAAATCCTGTTTTCTACACATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253799 lncRNA upstream 46330 9441837 ~ 9444817 (+) True G222286
TU253798 lncRNA upstream 51740 9438175 ~ 9439407 (+) True G222285
TU253797 lncRNA upstream 59347 9428811 ~ 9431800 (+) True G222284
TU253795 lncRNA upstream 66680 9424207 ~ 9424467 (+) True G222282
TU253794 lncRNA upstream 73945 9416993 ~ 9417202 (+) True G222281
TU253829 lncRNA downstream 17374 9525637 ~ 9529418 (+) False G222309
TU253835 lncRNA downstream 17374 9525637 ~ 9530011 (+) False G222309
TU253836 lncRNA downstream 17374 9525637 ~ 9530011 (+) False G222309
TU253837 lncRNA downstream 17374 9525637 ~ 9529418 (+) True G222309
TU253874 lncRNA downstream 55196 9563459 ~ 9563687 (+) True G222334
XM_036963772.1 mRNA upstream 5022 9485600 ~ 9486125 (+) True LOC118944441
XM_036968162.1 mRNA upstream 8061 9463337 ~ 9483086 (+) False LOC110520819
XM_036968160.1 mRNA upstream 8061 9463338 ~ 9483086 (+) True LOC110520819
LOC110520813 mRNA upstream 503301 8982594 ~ 8987846 (+) False LOC110520813
XM_036967958.1 mRNA upstream 552449 8932771 ~ 8938698 (+) True LOC110517169
XR_005040516.1 mRNA downstream 104631 9612894 ~ 9622952 (+) False LOC118945352
XM_021622311.2 mRNA downstream 180801 9689064 ~ 9692007 (+) False LOC110536529
XM_036968251.1 mRNA downstream 180999 9689262 ~ 9692007 (+) False LOC110536529
XM_036968249.1 mRNA downstream 181137 9689400 ~ 9692007 (+) False LOC110536529
XM_036968270.1 mRNA downstream 217112 9725375 ~ 9764307 (+) False LOC110536497
TU253800 other upstream 45443 9445047 ~ 9445704 (+) True G222287
TU253587 other upstream 422996 9067146 ~ 9068151 (+) True G222102
TU253570 other upstream 455314 9035358 ~ 9035833 (+) True G222089
TU252851 other upstream 582419 8906618 ~ 8908728 (+) True G221526
TU252867 other upstream 627171 8861500 ~ 8863976 (+) True G221539
TU253887 other downstream 98042 9606305 ~ 9611139 (+) True G222345
TU253897 other downstream 171497 9679760 ~ 9681752 (+) True G222353
TU254395 other downstream 394849 9903112 ~ 9913098 (+) True sphk2
TU254560 other downstream 765862 10274125 ~ 10276173 (+) True LOC110508845
TU254625 other downstream 803419 10311682 ~ 10312252 (+) True LOC110508886

Expression Profile