RNA id: XM_036968221.1


Basic Information

Item Value
RNA id XM_036968221.1
length 2215
RNA type mRNA
GC content 0.54
exon number 13
gene id LOC110536519
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9603201 ~ 9641233 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaagacagactgactgactgactgactgactgactgactggactggactggactggactggactggacagacATATAGAGGTGATAGGATAGTACAGTTGGAGTTTGACAAAGCTTTGGGTCAAGATGGGAGGGCATCGGAATTGGGTCACagaaaggagacagagggagagagagatggagagcgtgATCgaggggatggagaaagagagcacCGTGCCTAGACATCCCacaggacacatacacacagactgaCAAGCACATCACAGACTTCAACAAGCTaagagctcGTATCAGACGTTACTCTGACGTCATGCCCCTCCCAGACTCCTTCATCCAGAAGCAGCAGCTGGACGCCAGCATGGCTGACACCTTCCTGGAGCACCTGTGTCTGCTGGACATCGACCAGGAGCCAATCACAGCCCGCAACACAAGCATCATCTGCACCATCGggcctgCGTCTCGCTCCATCGCCAAACTGCAGGAGATGGTGAAGGCAGGAATGAACATCGCTCGACTCAACTTCTCTCATGGCTCTCATGAGTACCATGGTGAGACCATCAAGAACATCCGGGAGGCGGTCGAGACCATAACCACTGACCCTTTATATTACAGGCCGGTAGCCATCGCCTTGGATACCAAAGGCCCTGAAATACGCACAGGCCTGGTTCGAGGGACTGCAGAGCAGGAGGTGGAGCTGGAGCGTGGGGCCAGTGTGCGTGTGGTGACAGGGGAGGGGGACAGGGACAGTACGGATGGGAACGTCATCTGGGTGGACTACCCCAGTCTGCCTCAGGTCCTGGAGAAAGGAGGAAGGATCTATATCGACGACGGACTCATCGGACTAAAAGTCCTGGAGACAGgtCCAGACTGGGTGGAGGCACTGGTAGAGAGTGGAGGTGTTCTGGGCAGCCGTAAGGGGGTCAACCTGCCGGGGTGTGACCTGGTGGACATGCCCGCTGTGAGTGAGCGTGATGAGGGGGACCTGAGGTTCGGCGTGGCCCAGGGGGTGGACATGGTGTTCGCCAGCTTCATCCGCTGTGGCCAGGATGTCAGGGAGATCCGACGGGCCCTGGGGCCTTTCGGAAAGGACATCAAGGTGGTCAGCAAGGTGGAGAGTCGCCAGGGAGTAcataatttCTTGGAGATCCTGGCGGAGAGTGATGGGGTGATGGTTGCCAGGGGCGACCTGGGCATAGAGATCCCTGCAGAGAAAGTCTTCATCGCTCAGAAGATGATGATCGGACGTTGCAACTCCGCTGGCAAGCCTGTTATCTGTGCCACACAgatgtTGGAGAGCATGGTAGCCCACCCCAGGCCTACGCGTGCGGAGGGCAGTGACGTAGCTAACGCAGTGTTGGATGGAGCCGACTGTGTGATGCTCTCTGGGGAGACGGCTAAAGGACTGTTCCCTGTCGAGTCTGTGGCCATGATGCACTCGatCTGCAGGGAGGCAGAGGCAGCCATCTTCCAACAGCAGTTGTTTGAGGAGCTTCGTCGTCTGACCCCTCTGTCCAATGACCCTACTGAGGTCACTGCTATAGGAGCTGTAGAATCCTCCTTCAAATGCTGTGCTGGAGCTGTCATAGTACTCACTACTACTGGCAGgtcaGCCCAGCTCCTGTCCCGGTATCGCCCACGCTGTCCCATCGTCGCGGTAACAAGAAGTCCTCAGgTGGCACGTCAGGCCCAGCTGCTGAGGGGTGTGTTCCCAGTGCTGTTCCACCCCCTCCCTGCCCCCGTCTGGGCCGATGATGTAGACAACAGAGTCAACTTCGGCATGAAcatagGAAAGGCCAGGGGCTTCTTCAAGACAGGTGACATGGTGATCGTGGTGACCGGCTGGATCCCTGGTTCTGGTCACACTAACATCATGAGGGCAGTCCACGTGCCCTAAACACTCTGTTCTTATTGGACACTACCACTGACTGGCTGACAGGCCCACCAATCCTAAGTGGCACATAGCCTAACAGACACACTAACTGGAACACTAACTACATAGATAGCATAGAACTAGAATTAATAAATTTCCCTTATGTGGAGATGAAGTACATAAACAAAACAACAGTTTAGAGATTACGATGAAAAGTCAATATTTTTTCCATGTTCATTGAAAGTGATTTAAATGTAGACaatgtttttgtgtgtttattcAATTCTGTCTTGGAAGCACTGCCTCTCTCCAAATAAAGCTTGGAGCATAACCTTATCATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254299 lncRNA downstream 3544 9595705 ~ 9599657 (-) True G222658
TU254298 lncRNA downstream 7871 9595020 ~ 9595330 (-) True G222657
TU254246 lncRNA downstream 106348 9495826 ~ 9496853 (-) True G222607
TU254234 lncRNA downstream 126301 9474040 ~ 9476900 (-) True G222600
TU254128 lncRNA downstream 157499 9445037 ~ 9445702 (-) True G222511
TU254320 lncRNA upstream 407 9637249 ~ 9637907 (-) True G222672
TU254328 lncRNA upstream 20291 9657133 ~ 9659694 (-) True G222680
TU254335 lncRNA upstream 39096 9675938 ~ 9676294 (-) True G222685
TU254336 lncRNA upstream 39638 9676480 ~ 9676700 (-) True G222686
TU254345 lncRNA upstream 43066 9679908 ~ 9683371 (-) False LOC110534283
XM_036963782.1 mRNA downstream 8547 9559133 ~ 9594654 (-) False LOC110520821
XM_036968208.1 mRNA downstream 51558 9528874 ~ 9551643 (-) False LOC110508584
XM_021589213.2 mRNA downstream 51560 9528874 ~ 9551641 (-) False LOC110508584
XM_021589204.2 mRNA downstream 69056 9528874 ~ 9534145 (-) False LOC110508584
XM_021589228.2 mRNA downstream 77888 9515908 ~ 9525313 (-) False LOC110508594
NM_001124264.1 mRNA upstream 4796 9641638 ~ 9653952 (-) True cyp11b
XM_036968228.1 mRNA upstream 17451 9654293 ~ 9656911 (-) True LOC118945353
XM_036963791.1 mRNA upstream 29020 9665862 ~ 9673388 (-) False LOC118944443
XM_036968235.1 mRNA upstream 42916 9679758 ~ 9689081 (-) False LOC110534283
XM_036968246.1 mRNA upstream 42916 9679758 ~ 9689081 (-) False LOC110534283
TU254285 other downstream 40236 9561745 ~ 9562965 (-) True LOC110520821
TU254262 other downstream 51961 9531174 ~ 9551240 (-) True LOC110508584
TU254242 other downstream 106348 9494796 ~ 9496853 (-) False G222607
TU254025 other downstream 484828 9110973 ~ 9118373 (-) True LOC110501040
TU254075 other downstream 507985 9093876 ~ 9095216 (-) True G222465
TU254332 other upstream 35601 9672443 ~ 9673439 (-) True LOC118944443
TU254339 other upstream 43066 9679908 ~ 9683371 (-) False LOC110534283
TU254341 other upstream 43066 9679908 ~ 9683371 (-) False LOC110534283
TU254343 other upstream 43066 9679908 ~ 9683371 (-) False LOC110534283
TU254348 other upstream 43066 9679908 ~ 9683371 (-) True LOC110534283

Expression Profile