RNA id: TU253846


Basic Information

Item Value
RNA id TU253846
length 2306
lncRNA type read_through
GC content 0.40
exon number 2
gene id LOC118945352
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9612894 ~ 9622952 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGGAGATTGCATTTGGTGGATGGACATATCATCGAACGAAGAGAGAAGTCATTTGGGACTCAAAAGGATGTGACCTGACGTTAACCAAAGAAGTAGACGAGTGGGTGCTCACCATGAATCAGATTGAACCAGTTGAAGGTGAAGAATTAATAGGTGAAATAATGAGAACAAGATTGGCTGAAGGGAGTAGTTCCTCAGTCATTCAGAATTGGTCTTACGCCAATACCTAAACAGGAAGAGCCTGTGGTAGCTAGAAAGCATCAGAACCAGGAGGGTTCTTTATTGACATTTTGAACTTTTTGACTAACTCTAATGACCTACCTCAAGATAAGAACATTGCaaagatgacagacagacataccagACTCTGAACCACTCAAGGACACCACATGAAAAGAATAGTGAAGAATGAGTGGTACGAATGGGCTAAGTATACAGCAGAAATAAACATAGAATGGACAATTGTATTTTGTGTAGAAAATCACCTTCCCATCTTTTGATAGTACCTGAACCTGCATCATTTGAAGAATGtgttaaatgtaaaatgttcaatATTCAGAGAAAATACTACATTCCCTTGTGTAACATAGAATGTAGGATTGCTCGAGGGAGCACACTAGAGGCAGAACCATGTTAAACGAGACTGGATTAGGAGACAAGGATTGTGCTGCCTATGACATTAAAACTGAATTAAATGGACCTCAATTAGACAGAAGTATTGCGGATAGTTTCTGGATGTGTGGGAATGACAAACTGTTGAATGTACTGCCAGATGGATGGACGGGTCTTTGTACCTTAGTTAGAGCAATTCAACAGGTAGTCATCATGGGGTGATTTAATAATGGTTATGTTAACTCTAGAGTTAAGAGGGTGTATGAGAAAGACACTGAGGTATACTTTGATGCAATTGGACAGCCTAGAGGGGTACCTCGGGAGTTCAAGGCAAGAGATGAAGTTAAATCTGGATTTGAATCTATATTTTTGTGGATAACACCAAATAAGAACTTAGAGTGGATTAATTACATATACTATAACCAACAGAGATTCATTAACTATACTGACTCGGCTTTAACGGCGTTGGGGAAACAGGTACAGGCTCCCAGTAAAATGTCTTGGCAAAATAGACAGGCTCTCAATTGGCTTTTGGCAGAGAAGGGTGGAGTTTGTGTTATGTTCGGGGATGATTGTTGCACCTTTATTCCCAATAACACTGCGCCTAATGGATTCTTTGCTGTCGCTATGGCTAAACTTAAAGGGTTAAGAGAAGAGGTTAAGAAAAATGCTGGGGTGGACTCTCATGGTTGGGATTGGTTGGACTTAGCATTGGGGAAATAGGGAGCCATGTTTGCTAGGACGGCCTTTATGCTGGAAGGGGGGTTATTGGCTCTGGGTATTGTATTTTGTTGTGTTTTACCCTGGGTGAAATCACTTGTGATCCAGACAACGGTTAAACAGATGTTTGTAAGTAGAGCTGACACTCCGGTGATAGTTGATCCTGTGCCGGGTAGGCCAGGCCACTATACTGATGAAAATGGACAGTTATGCTGTCATTCCAAATTCATAAGAAAGTCAACTGATGCATATCCACAAAAAGGGTCATTTCCGTAGTAAATACTAGAGATGTTTGGTCTAAGTTAGGTGTTCTTTTATTGTTTCTAACTAGATCTTTTACTCTTATGAAATACTAGAGATGTTTGGTCTAGTTAATTAGGGAGCTTTATTTTTGTTAATCAATTGTTGATATTCTGATCCGTATATGTCCTTTTAAGTTTTTTGGTGCTTATTAAAGCACCAGAGGGGGGTTATGTGGGAGAAATTGGTTATGTGGGAGAAATTATATACATGATTTTGGTAACACAAGAGAAAGATACACTTATGGGTTCATTTCTTGttctggtaaaatgcattgtctattgtatagggcAGGAAGTAGATAAAGGCCATGGGAGTATGGGACAGCTGAAAAACACTTAAAATGCAGACACATATATGCCTAGGGCAACTGGACATACAAAGATCAGAGAGATAGacaaaggagggggtcagccaaagGACCAACTGATGGATTACAGGCATCAATCACATCACAGGGGAGACACACAAGTCTGTTTGATCTTAGACAACAATATGAAGAGAAGGTGACCAGGGCAGCTGAACACACTAAAAACTAGAGATAAAGGACACATACAAAAGGGACACATGGGGTTAATTACAGGGTCTAAACACAGGCCACAGGAAAGGGGGAGGTATATTATCTTTAGATCAAAGCAAGGGTCTTGTCATCATGATAATCTGACGGAAAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253889 lncRNA upstream 7561 9603200 ~ 9612674 (+) True G222346
TU253892 lncRNA upstream 26183 9592937 ~ 9594052 (+) True G222349
TU253882 lncRNA upstream 35635 9584216 ~ 9584600 (+) True G222342
TU253879 lncRNA upstream 47499 9572530 ~ 9572736 (+) True G222339
TU253878 lncRNA upstream 47963 9571840 ~ 9572272 (+) True G222338
TU253912 lncRNA downstream 23412 9646171 ~ 9669060 (+) True G222366
TU253917 lncRNA downstream 33661 9656420 ~ 9656931 (+) False G222371
TU253918 lncRNA downstream 33695 9656454 ~ 9657013 (+) True G222371
TU253931 lncRNA downstream 56270 9679029 ~ 9679295 (+) True G222381
TU253898 lncRNA downstream 59213 9681972 ~ 9683128 (+) True G222354
XM_036968166.1 mRNA upstream 111972 9490333 ~ 9508263 (+) False LOC110520820
XM_021622311.2 mRNA downstream 66305 9689064 ~ 9692007 (+) False LOC110536529
XM_036968251.1 mRNA downstream 66503 9689262 ~ 9692007 (+) False LOC110536529
XM_036968249.1 mRNA downstream 66641 9689400 ~ 9692007 (+) False LOC110536529
XM_036968270.1 mRNA downstream 102616 9725375 ~ 9764307 (+) False LOC110536497
XM_036968273.1 mRNA downstream 102616 9725375 ~ 9764307 (+) False LOC110536497
TU253887 other upstream 9096 9606305 ~ 9611139 (+) True G222345
TU253820 other upstream 113449 9502604 ~ 9506786 (+) False LOC110520820
TU253800 other upstream 174531 9445047 ~ 9445704 (+) True G222287
TU253587 other upstream 552084 9067146 ~ 9068151 (+) True G222102
TU253570 other upstream 584402 9035358 ~ 9035833 (+) True G222089
TU253897 other downstream 57001 9679760 ~ 9681752 (+) True G222353
TU254395 other downstream 280353 9903112 ~ 9913098 (+) True sphk2
TU254560 other downstream 651366 10274125 ~ 10276173 (+) True LOC110508845
TU254625 other downstream 688923 10311682 ~ 10312252 (+) True LOC110508886
TU255198 other downstream 1093892 10716651 ~ 10750403 (+) False LOC110520833

Expression Profile