RNA id: TU254345


Basic Information

Item Value
RNA id TU254345
length 2149
lncRNA type sense_over
GC content 0.53
exon number 4
gene id LOC110534283
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9679758 ~ 9689081 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCTCCCAACCGGTACGCCCTCCCCCCTGCACCTGTCACTTTACCACAGACTCTCCCACCTTCTCCTTTCCCACCCGCTGCTCCGGTTCCGCCCAAAGCTCCGCCTCCTGTAGTCTTAGCCAATCCGCCGCAGAAAAGACGCTTCACGGAGGAGGTGCCAGACGAGAGTGACAGCGGTCTGCTGGGATACCAGGTGCAGGCTTCCCTGTGGGCAGCCCCGGCCCAGAGGCTTCAGGACCCCCGCCACCGAGTTCCTCCGGGCCGCCGAGGGAGAGGGACAGTAGGCAGCTGATGCCTCCACCACCCATTCCGATGAACGGAGGCATGACACccaagatggaggagaggaggctgcTGCAAGGCCCCCTGGGTAAGGGCCCCACCCCATGTAACCCCCCTGACCCCTCCCCATCCATGGCCTCAGCCATAAAGCACGCTGCCCACCCCCCCGGACTCTTGGCTGTCAGTAGTCAGAGTCAAATAGCATTTTGCATGCAGACATGCTGTTCTCACACGTGACAGAACAGGTTCTAGCAGATTACATCAGACAGGCATAGTGTTCCTCGATAAGTTCTGCTTTGAAAGCCAGTCAGTTCAGAATCAAGAACTGGGCAAAGCTTCGATCCCCCACTGCCTCAGGTAACTCTGTCGTTGATCCTAAGTCAACCCCTAGCCCTAGGCACTGTGTAGGCCTGAGGAGGATTTTATAGGTGTAAGCGATATGTAGACAATTACAATTGGCCTGTAGAAGAGTACGGCTGAACTATTACCATACTGCTTACACCTGGCATCTCATCTTGTGACATCTAGGAGGTGTTTAGGGATGGATTTCAGATTGGGAGTCCCCCTCTGTCTAGCTGGTGCTGTCCCCTCGCTGCCCGTCCCTTTCTGATGACGTCATCAGACAGGAGTGTCTGTGCCCGTGTTTGACTCCCTCACTAACAAGACTCTCTCTTTTTTTGTGTTCTTTCTGTGTTTTTCTTCTCTTCCATGTCTCTCTGGGTGGGATGCCGGATGGGGGTGGGGCTCTTCTCCTGTGGCGCTGTTCTGCATTGTGATTGGACGGCCCTAACGCTGCCGCTCCCCACCGACCAATGACTGCCGCTGCTGACCCatgcccctcctcctctacctaaCTCACCCCTCCTGCCAAACACAATGCAATCTATTAACTTTCTCTCCCTATCTGTTGGTAAAACAATTGACTTCCAACTGTTGTTTTTGAAACCATTGTGCTGGTCTTTGGTTGTGTTCTTTCTCTTTGTGTgtatgtcttctctctctctctcgaccacccctctcctttctccctcattcctccctctttctcccactgtttttccctctcatctctctcagatCCCTCAGTGAAGAGGATGAAGACGGGGCTCGTGGCGTACGCTGGTGACTCCTCGGACGAAGAGGAGGACCACTCCACCCCCAAAACCTTGGGGGCAGGTAACCATGGTAACGTCGCTGGGGCAACCCACTCCACCCCCACGTCATCCTCGGGCTGGACTCTGGGGTACCGCTGCCCCCCTCCGCCTCCCCAACGTGCCAAAACACAGCAGGCACAGTCACAGCAGCCCATGCCCTTCTGGATGGCCCCATAACACAGGAGTATTAAACCTCATACCCTCCCCTGACACCTTGGGCCTTTTGGAGGGTGCCAAAAACCCCAAACTGAGCCCCAGtcccccctcttcccctttcCCCTGAACCATCACTCCTACCTGCTCCTCCACTTGATATAATTTATTTTGTGATGACTTAGATTTCGTTAAAACAGTTTTGCCATGTGCTCAGcagtaaagcagtgtgtgtgtgtgtgtgtgtgtgtaaaatggaCTAAACAGACCGGCTGGCTGATACAAAGAGAACAGACTGAACCAGCCAACCAGGCACAACAGACTGGATATATGGTGACAAGCAGCAAGATGCCCCAGACTTCCACACAGATTCAAGTGTACTCTGAACTCTGTATAGGAGAGACAGCTGAGGAACAGACACAAATGGAGGGTAATAGTGCCCTGTTTTTGGTTGATTTGGACGTGTCCACTCCTGGTTTTACTAGTGTAGAAAAGCACTGAGATAGAAGAGATttcaatgcattctaaatgatttctttgtcaaaaaatatatttccccC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254336 lncRNA downstream 3208 9676480 ~ 9676700 (-) True G222686
TU254335 lncRNA downstream 3614 9675938 ~ 9676294 (-) True G222685
TU254328 lncRNA downstream 20214 9657133 ~ 9659694 (-) True G222680
TU254320 lncRNA downstream 42001 9637249 ~ 9637907 (-) True G222672
TU254305 lncRNA downstream 56852 9612664 ~ 9623056 (-) True G222661
TU254312 lncRNA upstream 48784 9732155 ~ 9735857 (-) True G222665
TU254392 lncRNA upstream 82755 9766126 ~ 9767809 (-) True G222724
TU254670 lncRNA upstream 119073 9802444 ~ 9809481 (-) True G222961
TU254694 lncRNA upstream 153602 9836973 ~ 9838939 (-) False G222982
TU254700 lncRNA upstream 153602 9836973 ~ 9838939 (-) False G222982
XM_036963791.1 mRNA downstream 6520 9665862 ~ 9673388 (-) False LOC118944443
XM_036968228.1 mRNA downstream 22997 9654293 ~ 9656911 (-) True LOC118945353
NM_001124264.1 mRNA downstream 25956 9641638 ~ 9653952 (-) True cyp11b
XM_036968223.1 mRNA downstream 38675 9603201 ~ 9641233 (-) True LOC110536519
XM_036968218.1 mRNA downstream 43051 9603201 ~ 9636857 (-) False LOC110536519
XM_036968264.1 mRNA upstream 25431 9708802 ~ 9713188 (-) True LOC110536579
XM_036968352.1 mRNA upstream 259710 9943081 ~ 9960032 (-) False LOC110508630
XM_036968360.1 mRNA upstream 259710 9943081 ~ 9960032 (-) True LOC110508630
XM_021589422.2 mRNA upstream 318074 10001445 ~ 10002941 (-) False LOC110508696
XM_036968375.1 mRNA upstream 335942 10019313 ~ 10024005 (-) False LOC110508724
TU254332 other downstream 6469 9672443 ~ 9673439 (-) True LOC118944443
TU254309 other downstream 56974 9617625 ~ 9622934 (-) False G222662
TU254285 other downstream 116943 9561745 ~ 9562965 (-) True LOC110520821
TU254262 other downstream 128668 9531174 ~ 9551240 (-) True LOC110508584
TU254242 other downstream 183055 9494796 ~ 9496853 (-) False G222607
TU254786 other upstream 318044 10001415 ~ 10002894 (-) False LOC110508696
TU254805 other upstream 329590 10012961 ~ 10014892 (-) True G223070
TU254793 other upstream 337277 10020648 ~ 10023203 (-) False LOC110508724
TU254794 other upstream 337277 10020648 ~ 10023185 (-) True LOC110508724
TU255954 other upstream 1387575 11070946 ~ 11073750 (-) False znf628

Expression Profile