RNA id: XM_036968279.1


Basic Information

Item Value
RNA id XM_036968279.1
length 6987
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC110536497
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9725375 ~ 9764307 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catacatacacacatgcctCCTACACAATTACCTTTTATATTCATGACAAACATTTACATTATTAATGACACCAGAAATGAAGGTAACAAAATATGTTTTAGCTGCTGAGCAACCTACCCATTTCACAATGCCTTTTCATTGACGTTGTATGACCAATATTCTCCACTTTACATTTAAACTTTAGACAATAACATCTCATGCAGAATGTAATAGTTTTACTGTCACATCATTAGTTTTATTGTCACAAAACAGCACAGGTGGGGGATATTTGAAGTAGCCAGTTGTTGCTGGAGGGAGAAGGAGCCAGTCAGAGCGCACGACGAGACGTGGCGGGTAGCAGTCTGTCAACGAGGGTAATATCCCGGTGTGAGCCAGCGCACGGGCATACAGAGCGAGAGGAGCGCACCCGTCCCGGACACTTTACACTAGGCTGGCTACATCCTGTGTTACAAATTTATATATGAAGAAAAGCAATCAGGTGGTCCAGAATGgaaatttgtagaatttctttacAACTGCAAAAAGGCGAATAAAACGAGAGTACTGGTGAGACAGACGGTGGTGAGGCTGAGGCAGGCTgtgatgcatggaggaggaggcagaggagacagagagagagaggaagccagCAGAGAgaaagGTTCCATGACTTTATGGAGACATTTTCATTTGTAATTCCGGAGACATTTCTTCCCATTCTTTCCAAGAAGTGACGCAACATCAACACTCCCAGTTGGCAAGGACACAGGAGAGGCGTCATGGGAGGAACAAAGCGGGATAAGAAACCAGACGGGATAAGAAATGTGACGACTGACTGAGCAAAAGAAGAAAACGccagagaaagaaggaaagagagaaggattgTGTGTTCTCTACTTTCTCAGAAGTGCAGCCCCTAAATTCCTGTTACTATgcctgagagagggagggcagcAGACCAGTCAAAATGAACCCCTACGTCACCTCTCACTTTAGGAGGGATCTCTTTCCCCACTTCCACTTGTTGTAGAGGCTTATCTTatcttctcccctctcttacTGTTTATGTGACATGACAACACCTTTCTCTGTGTAAACCTAGGACAGTAGGTAACATCTGTCTCTGTGTAAACCTTGGACAGCAGGTAACATCTGTCTCTGTGTAAACCTAGGACAGTAGGTAACATCTGTCTCTGTGTAAACCTAGGACAGCAGGTAACATCTGTCTCTGTGTAAACCTAGGACAGCAGGTAACACCTGTCTCTGTGTAAACCTAGGACAGTAGGTAACATCTGTCTCTGTGTAAACCTAGGACAGTAGGTAACATCTGTCTCTGTGTAAACCTAGGACAGTAGGTAACACCTGTCTCTGTGTAAACCTAGGTCAGTAGGTAACACCTGTCTCTGTGTAAATCTAGGACAGTAGGTAACACCTGTCTCTGTGTAAACCTAGGACACTAGGTAACACCTGTCTCTGTGTAAACCTAGGACAGTAGGTAACACCTGTCTCTGTGTAAACCTAGGACAGTAGGTAACATCTGTCCCTGTGTAAACCTAGGACAGTAGGTAACACCTGTCTCTGTGTAAACCTAGGACAGTAGGTAACACCTGTCTCTGTGTAAACCTAGGACAGTAGGTAACACCTGTCTCTGTGTAAACCTAGGACAGTAGGTAACATCTGTCTCTGTGTAAACCTAGGACAGTAGGTAACACCTGTCTCTGTGTAAACCTAGGACAGTAGGTAACACCTGTCTCTGTGTAAACCTAGGACAGTAGGTAACACCTGTCTCTGTGTAAACCTAGGACAGTAGGTAACACCTGTCTCTGTGTAAACCTAGGACAGTAGGTAACACCTGTCTCTGTGTAAACCTAGGACAGTAGGTAACATCTGTCTCTGTGTAAACCTTGGACAGTAGGTAACATCTGTCTCTGTGTAAACCTAGGACAGTAGGTAACATCTGTCTCTGTGTAAACCTTGGACACCAGGTAACATCTGTCTCTGTGTAAACCTTGGACACCAGGTAACGACTGTCTCCTGTGTTGTGCCTTCGTTGCTCTTAGTCAGGGTGTCCTCAGTGATCTGGTCAAGGTGTTACACTGTAAACTGTCCTCAGGGAGCTGGTGAAGGGTTGAACTGTTCCTCAGGGACCTAGTAACATGTTTAGCTTGTTCACTGGGGGTCAAAGACTTGCCAGCGTTCGAAAACCACAGTCCACTGGAAATGTGTACGGAAGGTAAAGTCTAATATCGCAACCAAACCTTTTTTATGTCATTTGGATTTGCCCTGAATCAAACCTTTTGagttttctttgtttttttatCCCTAAGGGATTTGgcatgcaacaaacaaaaaaatctctCTTCCCAAAATATTACCTTTGTTTGCCTCAGTGGGTTGTTGTTTTTACCCAGTTTTCCTTGCACGTCCTCTTCACATTATTGCCACATTTTTCCAAAGGAATTAGACTGGAAGCTTTTCTGAAATGGATAAACATGTGTGTTCTCTGTCAAGCAGGGGTGTTGAGTGTGACACTTGAACCAAGAGGAGAGAACTAAAACCAACCCGTTTGGAAAAAACAAGGACACGGCACCTCCCGTCCCAGGATTGGACAGGATTTGACCTCTGAAATAACCTTTGAACTCTGAGTTTTCGTAGAGGTCATCCACGGGTGTATGCCCTGTGTGCCTGTTacccctcccctctttccccaCAACCGGCCAATAGGATTCTGCTCCTCCTACACATTCACTTTGACTCTATAATAGGTGTTGTATAGAATTAATCCTGGTGTCATATGTATAGGATGGTACACAACAATAAGTACACAGAAAGTACACACAATTGTACATGCCTTGCGTTCTAGTCAAGTAATTTAATTGTCTCTCCTTTTATTtattgtctttctccctctctttccctcactccctctgttATAGAGAATTCTCCCATGCAGTTGTAGTTAATATCATGTAGCTGATCTGGTCAGTAGTCAGTCTGTGCAGTGTGTTCTGTACTGAATTGACAATGCCTTTAGGAGAAACACAGAGTCTCTCAGGAATAGGATATCCAGCAGTCACCTGAGAGAGCCACAAACATATTTCAAATGTCTCTAAAAGTCTGCTTTTGTTGTGCCAAGAACTCACCACTGACATTTGAGGACTTTTGTGGCTTGGAAAAGATACTTGGATTTGAGGGCAAACTGCTGGTCACAGTCTCCCACTTGAGAGAGACACTGAGTGAGTATTATTTACACAGTGCATGGCTACTGTAGCTCATAAATGTGTTCCAAGGCCCTGTAGCAAAGGAAACATAGATATAAAAGGGTGGAGGAACATACTCTGACTGATAGGAAGTGAATGGATTGGAATTGTGTACCATTATCTGAATCAATAGTCTAAGGAGTTCCTCCTCTGTTTCAATCTGCCTTGTGTATTTTCCATGACCAAACCACTGGGAAGTGAAGATCATGGAACGTAAGAAACAGCATGCTATTATTTTCTCTGCTGGTTGCATGTTAGATACGTGTTAGAAACATAGACACCGTTTGACTGTACTTTACTGTGGATCTACCCCTGGACTCTGTATTGTCATATTGCACTTTAGTGAATGTGGGGAGTATATATCCTCCTTACTACTACCCCATTGTATCCCAAGCTCTCATCCTTTCAAGCTTCTCAGTTCCTGTAGCCTGATCAATGTGTTTCCCTTGTGCTGTTTCAAACTGTCAGCAAAACTCCTGCTTCCTTGTAAGATGGCCACAGACTATGGGTCCCTCCTGTTGATACCCTGGACACGTGTGTAACCTCCCTCTTCAGCCCAAAGGAGTGTAAGTACTACAGGGACTATACAGTATTACTGCGAGACTGTGTATCTGCTGCTGTGGAATACGTTTCTGACCAGAGGAGTATATACAGCAACAACTTGACCACTGAGTTTCCTTCAAGAGAATGGAAGGAAGACTGTGAATCAGGACACTGTAGAGCTGTGAGTAACCCTGACTGTTAATAAAAAGTTAGTGGAACAATGATCCGGGAAGTGAGGGAAGTCATCTACTGCTGGATACAGTTTTCCCTCATGGATTTACCTTTACCACATCAGATGGATTACTTTTCACCATAGAAACAGTGGAACTGGAAAGAAGTACAGAACACCAGGTTCTTATCAATACCTAGGTGGTCATAAACTCACAAGCACATAGGAGTTGAGACTACAGCTTCATCAGCGTAAGACATTGTATTTAGCACCATGGGAGCGGCGCGTGTTAAGCGACGTTTCAGTGCGGTGGTTGACGGGCTGGTAGACGAGGAGGAAGTCATTAAGCTGGCTCTGAGTGTTGCTGACACGGCCAGGGTGGGGGGGAGCACGGGAGGCTCAGGGAGCCCCAccagtctctctcccacacacaacCGAAATGGCAAAGCACTGCAGGGCAACGGCAGCAATGCACGGAGGCCCAGCGGAGCCCTGGAggcaggaggaggggaaggattGATGAAAGGAGGAGGgcgctcaggactgaggggtggGAGGGGCGGAAGtctggggagaaggggagaaggctGTTCGTCCTCAGACCGAGATTCAACACTGTCGTCCCCTTCCTCCTCAAGCCGCCGGCCCACCCGGCACTCTAGACGCCGGCCCCGCCACCGCTTTGTGGGCAAGGACGGGCGCTGCAACGTCACCTTCGTCAACATGAGCGAGAGAGGCCAGCGTTACCTCAGCGACCTCTTCACCACCTGCGTGGACATCCGCTGGCGTTGGATGCTAGTCATCttctgcctctccttcctcctctcctggcTGCTCTTTGGCTTCGCCTTCTGGCTCATTGCCGCCGCGCACGGGGACTTCGCCATCCGCCTCAACCCCAGCTCGGGTGCCTCTTCCGGGGGAGGAGATGAGTCCGGAGCAGGGGCGGTGGTGGAAGTGGAGGAAACGTGTTTCGTTCAGGTGAACAGCTTTATGGCGGCCTTCCTGTTCTCCCTGGAGACGCAGACGTCCATTGGTTACGGCTTCCGCAGCGTGACTGAGGCCTGCCCCCTGGCGGTGATGGCGGTCGTTTTGCAGTGCATTGTGGGCTGCATCATCGACGCCTTCATCATCGGAGCGGTCATGGCGAAGATCGCTAAGCCCAAGAAGCGTAACGAGACGCTGTTGTTCTCTGACACGGCAGTGGTGGCGCTGAGAGACGGGAAACTCTGCATGATGTGGAGGGTGGGGAACCTACGCAAGAGCCACCTGGTAGAGGCACACGTACGTGCACAGCTATTGAAGCCGAGGGTGACCCCAGAGGGAGAGTTCCTCCCGCTGGACAACGAGGACATCAACGTGGGATTCGACACGGGAACCGACCGCATCTTCCTGGTTTCCCCGGTAACCATCGTCCACGAGATCAACGATGAGTCGCCGTTTTTCGAGATGGACCGTCGGACTCTGGAGGGCGACGCGGAGCTGGAGGTGGTGGTCATTCTGGAGGGTATGGTGGAGGCCACAGCCATGACCACACAGTGTCGCAGCTCCTACCTCGCCTCCGAGATCCTCTGGGGTCACCGCTTCGAACCTGTGCTCTTCGAGAGGAAGAACTGTTACCAGGTGGACTACTCGTTCTTCCACCGGACCTATAAGATTCCCAGCACACCCTCTTGCAGCGCTAAAGAGTTGGCCGAGCAGAAGTACATCCAGGGCTCACGCTCCTCCTTCTGCTACGAGAACGAAGTAGCCCTGCAGCTCGTCTCCCCTGACAATGACCCTGAGGGCAACCCTGGCGGCTGCCCCTCATCCCTGACCCAACGATCCTCCCTCTCACAACCCACCCACACTAACTAGGGAGGCGACAGACAGAGGGGACAGGAAGTGACCTGGGATCCACAGGAagtcagggacagacagagggagagagaggcagaaagagagacaggcttCATAGGGAAAGAGACCAAAGTAGAGAAAGGTAAGTACATGATTTAGGGAAAAGGACAACATTGAGAGACTGAAGTtgagagaggtgtagaaagagaaACAGAAGACACCACAAAGACGCCGAGAgacaaacggagagagagagatactgtatactGTCAAACAGAGAGAAACGGACAGACAGATAGgacagaaaaggagagagagggatagaaagagagaaagagagagagaagtgtcaTTGAAAGGGGTAGATGGGCTGCTGCTACTCTGACTGTGTTAGCTGATTTGGACATAGCGATCTTTCAGAATCATTATGAACCCGTCTGTCTCAGACCCGTCCCGTCAACCAACCGCTACATTCACCACTGGCTCCAGCACCTAGCTGACCACACATACAACACTGACCCCTATTGGCTTCAGTCTGTACCTGCAGCTCCTGTTCAGTTACAACTCACACTGGACACATGGGAGTAAGGTGAAGCTGCCCCCTAGACACTGAGCTATGACCAGTTTAGTGTTTCTGCCCCCTAATGGTGAAGGTTAGGTTTTGGAGAGgctaagctgatcctagatctgtgcctacggGTAACTTCTACACCAAACCTGTTGATGTTGAATACTGTGTGACAGAATGAGGTAAAATGGTGTATTGACATTGAGGGATGTTTGTTGAAAGACAAGGCATTATTGATATGTTTTTGATTCTGGTCATTTGTGTTCTGTCAGGGTTTGAGCAGGTCTGTTGTGTTAGACTGCTATGTAGCAAAATGGATACAGAGAAACAGCTGAAAATAAGCAGCGATTTTAAGCTGTTtctttgacttgtactgtatgttgttattcTGTATTTATAATGCAAGACTATTATATATTTGCTTTATTTAATCAAACATGTTGCTTGTTCAACTGGGTGCAGTGTCAGCACAAAACCATATGAGTGCATCGTCTGGTAACATGTTATTTGAAGGTCTACTTCTAAACttatgattgattgtttaatATGGTTAACTATGGTTAACAAACAAAGGTTTATAAGTACTTTGTAAGCAGAACTTTGATTAAAATGTtaccttatgttattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253938 lncRNA upstream 22801 9702008 ~ 9702574 (+) True G222388
TU253901 lncRNA upstream 33390 9688881 ~ 9691985 (+) True LOC110536529
TU253898 lncRNA upstream 42247 9681972 ~ 9683128 (+) True G222354
TU253931 lncRNA upstream 46080 9679029 ~ 9679295 (+) True G222381
TU253918 lncRNA upstream 68362 9656454 ~ 9657013 (+) True G222371
TU254391 lncRNA downstream 1614 9765921 ~ 9767809 (+) False G222723
TU254390 lncRNA downstream 1706 9766013 ~ 9767809 (+) True G222723
TU254410 lncRNA downstream 42259 9806566 ~ 9807900 (+) True G222741
TU254414 lncRNA downstream 43732 9808039 ~ 9809141 (+) True G222743
TU254419 lncRNA downstream 58411 9822718 ~ 9824032 (+) True G222746
XM_021622311.2 mRNA upstream 33368 9689064 ~ 9692007 (+) False LOC110536529
XM_036968251.1 mRNA upstream 33368 9689262 ~ 9692007 (+) False LOC110536529
XM_036968249.1 mRNA upstream 33368 9689400 ~ 9692007 (+) False LOC110536529
XR_005040516.1 mRNA upstream 102423 9612894 ~ 9622952 (+) False LOC118945352
XM_036968178.1 mRNA upstream 217112 9491147 ~ 9508263 (+) False LOC110520820
XM_036968284.1 mRNA downstream 4493 9768800 ~ 9882291 (+) False LOC110508601
XM_036968290.1 mRNA downstream 4493 9768800 ~ 9882291 (+) False LOC110508601
XM_036968294.1 mRNA downstream 4493 9768800 ~ 9882291 (+) False LOC110508601
XM_036968296.1 mRNA downstream 4493 9768800 ~ 9882291 (+) False LOC110508601
XM_036968300.1 mRNA downstream 4493 9768800 ~ 9882291 (+) False LOC110508601
TU253897 other upstream 43623 9679760 ~ 9681752 (+) True G222353
TU253887 other upstream 114236 9606305 ~ 9611139 (+) True G222345
TU253820 other upstream 218589 9502604 ~ 9506786 (+) False LOC110520820
TU253800 other upstream 279671 9445047 ~ 9445704 (+) True G222287
TU253587 other upstream 657224 9067146 ~ 9068151 (+) True G222102
TU254395 other downstream 138805 9903112 ~ 9913098 (+) True sphk2
TU254560 other downstream 509818 10274125 ~ 10276173 (+) True LOC110508845
TU254625 other downstream 547375 10311682 ~ 10312252 (+) True LOC110508886
TU255198 other downstream 952344 10716651 ~ 10750403 (+) False LOC110520833
TU255234 other downstream 989310 10753617 ~ 10767669 (+) False LOC110520833

Expression Profile