RNA id: XM_036963801.1


Basic Information

Item Value
RNA id XM_036963801.1
length 923
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC110520822
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9886871 ~ 9888193 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCATGCTTGTTTAAGGCCCACCCCTACATCAGCAATGTGGTCGGATACACAACCCTGTTCGCATCCGCGGACCTCATACAGCAAAGCATGCTTGGAGGGAAACAGAGTGGAGGATTAAACACAGACAAGGGAACACACACCATCCATGACTCAGAGGGGGCCAAGCTTAACATGGAGGGAACCAATATTTCCACTGGTACTAAAAGTGTCACAACATGGGCTGATATTGACTGGGCCCAGACCGCTCGAGTGGCCTTTGTTGGGTTCTGTTTCCATGCCAATTTCAACTACCATTGGCTGAAGGGGCTGGAGAGGATGTTGCCAGGGGGAGGGGCCAAAAGGGTGTCAGGGAAGGTAGTGCTGGATCAACTGGTTGCTGCCCCCGCTACTATCAGTGCCTTCTTcatagGTCTTAGCGTATTAAAAAACAAAGAGGACCCATTGGAAAACTGGAGGGAGAAATTCTGGACTTCATACAAGACTGGAGTGGTCTACTGGTCAACAATGCAGgcattGAATTTCTCCCTGGTTCCCCCAGTTGCTCGTACAGTGTTTGTGGGTGGCATCACGCTGGTGTGGACAGTATTCCTGTGCCATTTCAGACAGCAGAAAGATGATACACAAAACAAACCCCCCTCTCACTGATATGGATGTTATTGGATGAGCTGTGTGATGACAAAATTGTGACAACTATTTCATTGAATAGCTTTTATGTGCTGCACGCTTATAACTTGATTAAAGTAGTTATTTTAAAGAATGTGTTTTTCATCTTTGCATGATGGCAGgcagcctagcagttaagagcgttgggccactaACTGGAAGGTCGCTGGTGCGAATCCCCGAGCCTACGAGGTGATATATCTGTTGAtatacccttgagcaaggcacttaaccctaattgctcctgtaagtcgctctgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254434 lncRNA upstream 26380 9860223 ~ 9860491 (+) True G222758
TU254429 lncRNA upstream 37563 9844592 ~ 9849308 (+) True G222753
TU254428 lncRNA upstream 40464 9844221 ~ 9846407 (+) True G222752
TU254419 lncRNA upstream 62839 9822718 ~ 9824032 (+) True G222746
TU254414 lncRNA upstream 77730 9808039 ~ 9809141 (+) True G222743
TU254401 lncRNA downstream 37552 9925745 ~ 9926085 (+) True G222733
TU254446 lncRNA downstream 49003 9937196 ~ 9937546 (+) True G222770
TU254480 lncRNA downstream 76461 9964654 ~ 9965260 (+) True G222797
TU254482 lncRNA downstream 79285 9967478 ~ 9967770 (+) True G222799
TU254453 lncRNA downstream 85568 9973761 ~ 9998774 (+) True LOC110508650
XM_036968284.1 mRNA upstream 4580 9768800 ~ 9882291 (+) False LOC110508601
XM_036968290.1 mRNA upstream 4580 9768800 ~ 9882291 (+) False LOC110508601
XM_036968294.1 mRNA upstream 4580 9768800 ~ 9882291 (+) False LOC110508601
XM_036968296.1 mRNA upstream 4580 9768800 ~ 9882291 (+) False LOC110508601
XM_036968300.1 mRNA upstream 4580 9768800 ~ 9882291 (+) False LOC110508601
XM_021589267.2 mRNA downstream 5068 9893261 ~ 9900476 (+) True LOC110508611
XM_036968317.1 mRNA downstream 12616 9900809 ~ 9916529 (+) False sphk2
XM_036968325.1 mRNA downstream 12616 9900809 ~ 9916529 (+) False sphk2
XM_021589316.2 mRNA downstream 38090 9926283 ~ 9933661 (+) False LOC110508641
XM_021589325.2 mRNA downstream 38972 9927165 ~ 9933661 (+) True LOC110508641
TU253897 other upstream 205119 9679760 ~ 9681752 (+) True G222353
TU253887 other upstream 275732 9606305 ~ 9611139 (+) True G222345
TU253820 other upstream 380085 9502604 ~ 9506786 (+) False LOC110520820
TU253800 other upstream 441167 9445047 ~ 9445704 (+) True G222287
TU253587 other upstream 818720 9067146 ~ 9068151 (+) True G222102
TU254395 other downstream 14919 9903112 ~ 9913098 (+) True sphk2
TU254560 other downstream 385932 10274125 ~ 10276173 (+) True LOC110508845
TU254625 other downstream 423489 10311682 ~ 10312252 (+) True LOC110508886
TU255198 other downstream 828458 10716651 ~ 10750403 (+) False LOC110520833
TU255234 other downstream 865424 10753617 ~ 10767669 (+) False LOC110520833

Expression Profile