RNA id: TU254453


Basic Information

Item Value
RNA id TU254453
length 1774
lncRNA type sense_over
GC content 0.35
exon number 3
gene id LOC110508650
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9973761 ~ 9998774 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGATTTATCACTTTTGTACAACTTAATTTACATGTTCTCTGTATGGAGATTTAAAGAAAAGTGTATTGATGTTGCTTACTGATGTCATCAGCACAATGGGTAGGAAATAGTTCAACaccaatatttttttaaataataatttgttttaatGTACGGTAGTTTTTGTATAAGGAATTACATTTTTAAGATCAACTGATCAATTTACAAAGGCAATTGATATGATATGTTATACACAGAAATATGTTGCATTGCAAAGCTATTGCTGTTGTTTGGGATGTGTAGATTGTATTGAACGTTTACCTTCAAGAGTCTCTGTTATCGACAGAAACTTATTAATAGAAGTAAGAAGGAGCAaccgtacagatgtaggatctttattTGATCACTCATTTGTTGGTGAGAATGTTCCTGcatagcaggaaatgcaaacttgtagtgtattttagtttttaaaaggcttctaaagtgtgtctatcaacccctacaaaaatgtagattaatttacatttcttgttgctgcaggattattttcctacaACTGGCTAAAatgaagatcttacatctgtaacAATGCATCCCTGTGGGGTGAACTGTACTTCCATTTGTATTGGACAGGTAGAAGAGGAAAGAAACAGTGGAGGGTTTGGAGGATGGGTTTTCCTGGACAGTAGGTTTGAGAAATTGGCAATGTGTTGAGGGATAAAAGTGTAAGAAAAGAGATGGATTCAGCTCGTTTGTTTTTACTAGTGTCTTCTCGATTGATTTCGAATTCGACTCCAACAGATTGTTCACATCTAGCAGATTTTAGCTGCACGTTTACCAATTGCAAACCGTACAGAACCTTATTTAAAGGGCGAAGACTGATTGTGTTTATGAAGTCTAACTTTGAAAGTGTTGAGGAAAGTATTTGGAAAGTGGAACAGTGTGTGAGCAAGTGTCAATGGTAAACTAGTGTAGAAAGTAGTatttttctctcactttctccatGTCTGGTGTCTCTTTAGACTGTCATCTGGTATCTCGCTGGTGTCTCTGTCATCTAGAAAACTGCAGTTGAGAGATTCAGGGTGGAAATCTGTGGCTGGGAAAATGGAGTTTCTCTTTATGATCTTTATTCTGATTTCCGGCCCTTACAGTGTATAGTTCCTTCTCTCCGCATGTTTCTGTATCGTATTAACTTGCATCTCTAACCTAGCCTGTGAAATGATTGACTTTCTTGCTATGGTAATTCTAACACACAATAAAAACATTGATGTTGATTTAAATACTGAGTATAGTGGAATTACATAGTTGAAGTTTACTTATGTTTGTacaaattgcaaaaaaaaaaaaaatacgttTTTGATCTTGTTTAACTTTGTTATTCCTTAACCTTGCACCTTTTCACCGTCCTAACCGTCTTCAAAATATGACCTTCCAATGTCAATCTAGCTatatgAGATTGGGATCCAGTTGTAAAAGGCAAAATAAAGGTGATGCTGTGGTGACTATTCAGGATCTTATATTTAGGATGCCTCTGTTAGTAGGATTGTCTTAACTACTACTACAATTGCCTCTGCCCCTACTTTTATTTCCGTCTTTTAATTTGTTTTGTTATATCATTATTTTGTTACTTCATCTGTAGCTTTTTTCTCTTTAAAACAGCATTGCCTTTCCGAGACACACAACAATCATGGTCACAGTATAAAAccttacaaatacacacacattccTGATACCACTGTTATTGTATTTCTTTCAAATGAATActtcaataaacatgttaatCACTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254482 lncRNA upstream 5991 9967478 ~ 9967770 (+) True G222799
TU254480 lncRNA upstream 8501 9964654 ~ 9965260 (+) True G222797
TU254446 lncRNA upstream 36215 9937196 ~ 9937546 (+) True G222770
TU254401 lncRNA upstream 47676 9925745 ~ 9926085 (+) True G222733
TU254434 lncRNA upstream 113270 9860223 ~ 9860491 (+) True G222758
TU254497 lncRNA downstream 24741 10023515 ~ 10024115 (+) True G222813
TU254499 lncRNA downstream 25695 10024469 ~ 10024854 (+) True G222815
TU254525 lncRNA downstream 74768 10073542 ~ 10073772 (+) True G222838
TU254526 lncRNA downstream 75096 10073870 ~ 10074374 (+) True G222839
TU254489 lncRNA downstream 75951 10074725 ~ 10075966 (+) True G222805
XM_021589316.2 mRNA upstream 40100 9926283 ~ 9933661 (+) False LOC110508641
XM_021589325.2 mRNA upstream 40100 9927165 ~ 9933661 (+) True LOC110508641
XM_036968317.1 mRNA upstream 57232 9900809 ~ 9916529 (+) False sphk2
XM_036968325.1 mRNA upstream 57232 9900809 ~ 9916529 (+) False sphk2
XM_021589267.2 mRNA upstream 73285 9893261 ~ 9900476 (+) True LOC110508611
XM_021589410.2 mRNA downstream 4112 10002886 ~ 10005885 (+) False LOC110508688
XM_036968376.1 mRNA downstream 4297 10003071 ~ 10005885 (+) True LOC110508688
XM_036968369.1 mRNA downstream 7103 10005877 ~ 10018441 (+) False cnot3a
XM_036968368.1 mRNA downstream 7255 10006029 ~ 10018441 (+) False cnot3a
XM_036968371.1 mRNA downstream 7255 10006029 ~ 10018441 (+) False cnot3a
TU254395 other upstream 60663 9903112 ~ 9913098 (+) True sphk2
TU253897 other upstream 292009 9679760 ~ 9681752 (+) True G222353
TU253887 other upstream 362622 9606305 ~ 9611139 (+) True G222345
TU253820 other upstream 466975 9502604 ~ 9506786 (+) False LOC110520820
TU253800 other upstream 528057 9445047 ~ 9445704 (+) True G222287
TU254560 other downstream 275351 10274125 ~ 10276173 (+) True LOC110508845
TU254625 other downstream 312908 10311682 ~ 10312252 (+) True LOC110508886
TU255198 other downstream 717877 10716651 ~ 10750403 (+) False LOC110520833
TU255234 other downstream 754843 10753617 ~ 10767669 (+) False LOC110520833
TU255248 other downstream 754843 10753617 ~ 10767669 (+) False LOC110520833

Expression Profile