RNA id: XM_036968368.1


Basic Information

Item Value
RNA id XM_036968368.1
length 4805
RNA type mRNA
GC content 0.50
exon number 19
gene id cnot3a
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10005877 ~ 10018441 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGAATCCACATTTTGTGGGTGGGATTTAGCTACCGTCCATCTTTAGTGTACTGTACAGGCAGATTGACGAAAAGAAAACAAAATTTGGAAGTAAAGAAGACTGGGGAAATAGTTTTAGTTCTAATTGAAAGAGACAAACGAAAAGCCCAAACCCTAGACGGTATGAGGACATTGTCGTAGTGAAGCCATGGCTGATAAGAGAAAACTTCAAGGTGAAATTGACAGATGTTTGAAAAAGGTAGCTGAAGGCGTAGAACAGTTTGAAGACATTTGGCAGAAGCTTCACAATGCAGCCAATGCCAACCAAAAGGAAAAATATGAGGCAGACCTTAAAAAAGAGATTAAAAAGCTACAGCGATTGAGGGATCAGATAAAAACATGGGTGGCATCAAATGAGATCAAAGACAAAAGGCAGCTAGTGGAGAATCGCAAGGTCATAGAGACGCAAATGGAGCGGTTTAAGGTGGTAGAGCGGGAGACAAAGACGAAGGCCTACTCTAAAGAAGGCCTGGGGCTCGCCCTGAAAGTGGACCCAGctcagagggagaaagaagagacGGGAAACTGGCTAACGAATACGATAGACACTCTAAATATGCAGGTGGACCAGTTTGAGAGTGAGGTGGAATCCCTCTTCATTCAAACCaggaagaagaaaggagagaaagagAAGCAGGATCGCATTGAGGAGCTAAAGAGGTTTATAGAAAGGCATAGGTACCACATTCGCATGCTGGAGACCATCCTGCGCATGCTAGACAACGACTCGGTGCAGGTGGACTCCATCCAGAAGATCAAGGACGACGTGGAGTACTACATGGAGTCGTCACAGGACCCAGACTTTGAGGAGAACGAGTTCATTTACGACGACCTGGATCTGGAGGACATCCGTGAGTCGCCCATGGACAGCCAGGAGCTCGATGACGAGTCCTGGGATGATCATGATGATGATGCTCATGCTATCAGCTctGCAGCACTGGTGGCCACCTCTCCAACGGGCATGGGGAACATAGAGGATGAGATGTTCCTCCACTCGAGCAGCActcccacctccaccacctcctcttcccccatccctccatccccggCCACCTGCACTGCTGAGAACTCTGAGGACGATAAGAAGAGAGGGCGGTCGACAGACAGGGACGTTAGTCAGTCTCCTGCGAAGAACGGCACTTCCTCCTTGTTGTTGTCCTTTTCCTCGTCCGCCAATTCCgggtcctcttcttcctcctctcttgtcTCCATGGCCGCCGTTGTCGGAGGCAACCCTGGGGTTCCCACAAGCAACAGTCTAATAGGAAGCTTCAGCAGCGCCGTACAACAACATCAGCCTCAACCTCCACAGCAACCAGTCCTGCAGCCACtgcaacaaccacaacaaccccAAACAAAACCTTGCACCCCCAGCCCACCCAGCCACCCCCTTCTCTCCAccgccccctctctccccacacccACCACACCCATCTCAGCCTCCCCAAACTCCCTGCCCCAGGTCTCGCCTGGTCATATCCTCAACTCCAGCCTAGGCCTTGGGTTGGGCCTGGGTAAAGTTGGCATGACGGGGACAAGCAGTGCCAACTCAATGTCTGGTCTGGGCCTGACTGGGATGTCTGCCTCTCTGAACACCATGGCAGGCCTGCTCTCTGGGTCCACCCATGCCCCTTACGCCCAGGCAGCCGCGTTGGGAGGCCTGGGTCTGAGTACCACTACCCAGTCCAGTGTCTCACTGGAGAGCTCCTCCATCCCCACCTCTTGCTCCAGTGGAGTGACCACCAACGGGGCTGGGACAGGCCTGGGCCTGCTGGGGTCCAGCCCAGCACACGGCTCCCTGACTGGGGGGATCCTGGGCCTGGTGCCTGGGCAGAGTGTGATCCCTGGGCCCCCTCTGATCCCTCTCAGCCCTGTTGGTGCTGCCCCTGGGGGGGCAGTGGGGATGATGGGAGGAAACGGAGGAAGCATGGGGCCAATCGGAGGAGTAGTTGGGTCGAACGCAGCCCCTGCCAGACCGCCCAGTGGACTGAAGCAGAACGGAAGCACAAGTTACAGTGCTGTGGTGGCAGAGAGCACAGCAGAGTCCGCCTTCAGCACACCCAGCCAATCACAGAGCAGCCAGCCTTCCTCGCTGACCTCCTCAGCCAGTCAGCCtatGGACAACGGTCCCAGCCTCATCAACTCCATCACCTTGCCCCCCAGCTCTCCGTCCCCCTCGTTTTCCGACAGTATCCCCGGTGGTGGGAGTCTCCTCAACGGACCCCACTCCTACACACAGGCCTCTGAGGGCCTCAAgCTTCCTACAGACCTCCGTCAGATACTGATGGAGACCAGAATGTCAGCGCAGGCCCCAGAGCCGCCAGGGGCCATGGCTACAGCCACTAACACACGAAAGAGAAAGCAGTGTCAGgcccCGGAGCCTCTGAGTTCTCTGAAGGCAATGGCTGAGAGAGCAGCATTAGGATCAGGTCTGGATGGAGAGATCCCCAACCTGCACCTCACAGACAGAGacatcttCTCTGGTTCGTCAGCTGCCCCCGGCACGCCCGCAGCCCCCCAGCCCTCCCTGTCGGAGGTGAGCATCCCCCCTTCCCTGGGGGTGTGTCCCCTGGGTCCCACTCCGCTCTCCAAGGACCAGGTGTACCAACAGACCATGCAGGAGTCTGCTTGGACACACATGCCGCACCCCTCAGACTCCGAGAGGATCAGGCAATACCTGATGAGGAACCCATGCCCCACCCTGCCATTCCATCATCAGATGCCCCCCCACCACTCAGACTCTATAGAGTTCTACCAGAGACTGTCCACAGAGACGCTCTTCTTCATCTTCTACTACctggagGGCACTAAAGCTCAGTACCTGTCAGCCAAGGCTCTGAAGAAGCAGTCGTGGAGGTTCCACACCAAGTACATGATGTGGTTCCAGAGGCACGAAGAACCCAAGACTATCACTGATGAgtttgaacagGGCACTTACATCTACTTTGACTATGAGAAGTGGGGTcagaggaagaaggaggggttCACCTTTGAGTACAGGTACCTGGAAGACCGAGACCTGcagtgacagagggaggagaaacGTGCTGCTGTTGACATTCCGAGACTGACCTAACTCCATGCTGTGGATAGAGATTGTGATGTGTAGTAGAACCCTGCTCCTAAAATGGAGGATGTTGTCTGTATAGGCAGCGtctaatggcaccctactcccacAGTGTACTACTCCGGCCCAAAGCCCTAGTAGTGGGGAATAGAACCCCCTACCTATAacgggctctggtcagaagtactgTACTAGGGGGGAGTAGGGAGTCGTCACAGATCTGTGCCTGTCTGAACACTCAGTATGTGGCATTACATTGGGAAGCTCCATGCATGTTccatgttgtttttgtttttctttgtttcaacaacaacaaactctGTACTGCCCCCAACTGGAGTATAGAAGCCTTGGACTAAACAACAAGCAAACATACATTTGATTTGGCTACATGTGAAAAAAGCCCATCTTGCTTGAATTGACTGTAATTAGTGGTTTAGAATGGAGACACACAGTTGTCTAGCTAGCCAGCAGACAGGGCTCCTTTTAAGATGTTATGATGCCTGTTGATTAAGTTCACTATTAGAGATAGTGAGTGATTATCAATAGTTTTATTGATGTTGTCTTGGTCGATAAAAAGCTCTGATTGAGAATGACCACATGGCCTCTTCCTTTTGATGGGGATAGAGAGGCATTATTGGACATTGGATTAAATTGCTATGCAATTGAACtggtctctgcctccctctctctttacaaataaaatattttaaagtTTAACTGTGAAAGGAAACGCATCTTCATTGGGGCATTATGTTTGTGAGATTAGCTAATAAAGGATTTGTACCTGAAAGAAGCAGTTGTGTTGACATGAAGTCTGCCTGATGATGTTCATGGTTTCTATACCATGAAGCACCAGCCACTATTGCCCTTCAAAGTATAACTACTAGTGGAAGGATGAGAACAGTAGAAATAGGATTATTCCCTTTGAGTCGGTGTATACTTACTCAAAAGGGTGTCAACAGTTCTCAGCCTTGCATGTAGTAATCTGTTCAACTCATTTTTATCCTGTTATTTTAAATCGTTTCCAAAAAACCCTGATTCCGCCATTCAGGGCTCTGTTCAATCCGTATCTCAGAAGTTCAGCGCTAGTGTAATAAAAATGTTAAGGCAATATTCCCGCGTtcgcagagactgcattcacggtaaaatGCTGCACGTCGCATCAATCGGAATTACTTTTACGTCTTTATTGCGCAATTTGTAACACTTCAGCGGTAGATTGAATAGATCTTCATTCACTGCATTAAATTTACTACTCGTTTATACCAAGTTAAATTATTTACTGTTTTCATAGAATATGAAGCATGCTTCAACCATTCAACCTAGAATGTTCTGAAAAGCTGTTGGTGAATTTAACTTGGTTAGATGGATGAATCGTGTATAATTAAACTATCATGAGCGGTCTCCAGTGATTTAGTTAATGTAGAGGTTGTCCCTGAGAACATACACTTCAGTTCTTTCCTGAAAGAGATTTTTGGAAAAGGAATCGAGAGAAGTTGAGTTTTACCTTTTATAAATTCAATTTTTGGGCTTTTGAGAAAGGGAAGGCTGAAATGTGAATTTCTCAAAAAAAATAAACTATTTACTGGCTGTTTTATCAAATGAAGTTGTCACGTTTCTGCATGGGAGATGTCATGTGGGGGTAAAACATGATTGTAAAATTTCAATAAAACACTTTTCTGGAATTGTGACGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254453 lncRNA upstream 7255 9973761 ~ 9998774 (+) True LOC110508650
TU254482 lncRNA upstream 38259 9967478 ~ 9967770 (+) True G222799
TU254480 lncRNA upstream 40769 9964654 ~ 9965260 (+) True G222797
TU254446 lncRNA upstream 68483 9937196 ~ 9937546 (+) True G222770
TU254401 lncRNA upstream 79944 9925745 ~ 9926085 (+) True G222733
TU254497 lncRNA downstream 5074 10023515 ~ 10024115 (+) True G222813
TU254499 lncRNA downstream 6028 10024469 ~ 10024854 (+) True G222815
TU254525 lncRNA downstream 55101 10073542 ~ 10073772 (+) True G222838
TU254526 lncRNA downstream 55429 10073870 ~ 10074374 (+) True G222839
TU254489 lncRNA downstream 56284 10074725 ~ 10075966 (+) True G222805
XM_021589410.2 mRNA upstream 144 10002886 ~ 10005885 (+) False LOC110508688
XM_036968376.1 mRNA upstream 144 10003071 ~ 10005885 (+) True LOC110508688
XM_021589336.2 mRNA upstream 12602 9973958 ~ 9993427 (+) False LOC110508650
XM_036968366.1 mRNA upstream 12602 9973958 ~ 9993427 (+) False LOC110508650
XM_036968367.1 mRNA upstream 12602 9973958 ~ 9993427 (+) False LOC110508650
XM_036968385.1 mRNA downstream 59604 10078045 ~ 10094991 (+) False LOC110508764
XM_036968384.1 mRNA downstream 59606 10078047 ~ 10094991 (+) False LOC110508764
XM_036968387.1 mRNA downstream 59606 10078047 ~ 10094991 (+) False LOC110508764
XM_036968386.1 mRNA downstream 59608 10078049 ~ 10094991 (+) False LOC110508764
XM_036968388.1 mRNA downstream 63422 10081863 ~ 10094991 (+) True LOC110508764
TU254395 other upstream 92931 9903112 ~ 9913098 (+) True sphk2
TU253897 other upstream 324277 9679760 ~ 9681752 (+) True G222353
TU253887 other upstream 394890 9606305 ~ 9611139 (+) True G222345
TU253820 other upstream 499243 9502604 ~ 9506786 (+) False LOC110520820
TU253800 other upstream 560325 9445047 ~ 9445704 (+) True G222287
TU254560 other downstream 255684 10274125 ~ 10276173 (+) True LOC110508845
TU254625 other downstream 293241 10311682 ~ 10312252 (+) True LOC110508886
TU255198 other downstream 698210 10716651 ~ 10750403 (+) False LOC110520833
TU255234 other downstream 735176 10753617 ~ 10767669 (+) False LOC110520833
TU255248 other downstream 735176 10753617 ~ 10767669 (+) False LOC110520833

Expression Profile