RNA id: XM_021589539.2


Basic Information

Item Value
RNA id XM_021589539.2
length 799
RNA type mRNA
GC content 0.54
exon number 5
gene id rps9
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10074725 ~ 10077392 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCAATTGCTGCTTTGAAGTGGTGTCGTCACATATTTTTGGGAAATGTAGTTCGCGGGATCCATATAAATAATGGAGAGATCCAATTTGACTTCCTCTTTATCGTACTGGCCTGTGGAAGACAGGCACTTTGATCCACCATGCCCGTTGCCAGGAGTTGGGTTTGTCGCAAGACATACGTCACCCCCCGCCGCCCCTTCGAGAAGTCTCGTCTTGACCAGGAGCTTAAACTTATCGGGGAGTATGGTCTGAGGAACAAGCGTGAGGTGTGGAGGGTGAAGTTCACCCTGGCCAAGATTCGCAAGGCTGCCAGAGAGCTGCTCACTCTGGATGAGAAGGACCCCAAGCGTCTTTTTGAAGGTAACGCCCTGCTCAGGCGTCTGGTGAGAATCGGTGTGCTGGATGAGGGCAAGATGAAGCTCGATTACATCCTGGGCCTGAAGGTGGAGGACTTCTTGGAGAGGAGGCTCCAGACGCAGGTCTTCAAGCTGGGCCTTGCTAAGAGCATCCACCACGCCCGCGTTCTCATCCGCCAGAGGCACATCCGTGTGCGCAAGCAGGTGGTCAACATCCCCTCCTTCGTGGTGCGCCTGGACAGCCAGAAGCACATTGACTTCTCCCTGCGTTCACCATACGGTGGCGGACGCCCCGGCCGAGTCAAGAGAAAGAATGCCAAGAAGGGCCAGGGTGGTGCTGGGGGAgctgatgaggaagaggaggattaaAATGGAGGCTGACTGGGTGTGTTCGTGTCTGGCACTTCCTGTTTTTCAATAATAAAAACATTATTTGACCACAAA

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0015935 small ribosomal subunit cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02997 RP-S9e, RPS9; small subunit ribosomal protein S9e

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254795 lncRNA downstream 49869 10024459 ~ 10024856 (-) True LOC110520824
TU254787 lncRNA downstream 71831 10001415 ~ 10002894 (-) True LOC110508696
TU254784 lncRNA downstream 75349 9998968 ~ 9999376 (-) True G223058
TU254776 lncRNA downstream 87603 9980349 ~ 9987122 (-) False G223052
TU254817 lncRNA upstream 9460 10086852 ~ 10089362 (-) True G223081
TU254820 lncRNA upstream 22069 10099461 ~ 10105025 (-) True LOC110520825
TU254852 lncRNA upstream 65917 10143309 ~ 10143823 (-) True G223112
TU254855 lncRNA upstream 75953 10153345 ~ 10153706 (-) True G223115
TU254899 lncRNA upstream 140069 10217461 ~ 10219349 (-) True G223148
XM_021589496.2 mRNA downstream 1870 10063117 ~ 10072855 (-) True mboat7
XM_021589487.2 mRNA downstream 1871 10063117 ~ 10072854 (-) False mboat7
XM_021589457.2 mRNA downstream 12255 10053535 ~ 10062470 (-) True tmc4
XM_021589511.2 mRNA downstream 21357 10047635 ~ 10053368 (-) False LOC110508742
XM_021589518.2 mRNA downstream 21357 10047635 ~ 10053368 (-) True LOC110508742
XM_036968381.1 mRNA upstream 22045 10099437 ~ 10128902 (-) False LOC110520825
XM_036968382.1 mRNA upstream 22045 10099437 ~ 10128902 (-) False LOC110520825
XM_021589618.2 mRNA upstream 67141 10144533 ~ 10151145 (-) True LOC110508790
XM_021589630.2 mRNA upstream 82942 10160334 ~ 10163967 (-) True LOC110508798
XM_021589640.2 mRNA upstream 90392 10167784 ~ 10180249 (-) False flcn
TU254793 other downstream 51522 10020648 ~ 10023203 (-) False LOC110508724
TU254794 other downstream 51540 10020648 ~ 10023185 (-) True LOC110508724
TU254805 other downstream 59833 10012961 ~ 10014892 (-) True G223070
TU254786 other downstream 71831 10001415 ~ 10002894 (-) False LOC110508696
TU254343 other downstream 391354 9679908 ~ 9683371 (-) False LOC110534283
TU255954 other upstream 993554 11070946 ~ 11073750 (-) False znf628
TU255996 other upstream 1094728 11172120 ~ 11174367 (-) True G223942
TU256045 other upstream 1198525 11275917 ~ 11278628 (-) False G223969
TU257101 other upstream 1649970 11727362 ~ 11741584 (-) True LOC110509576
TU257113 other upstream 1675459 11752851 ~ 11753680 (-) False G224869

Expression Profile