RNA id: XM_036968386.1


Basic Information

Item Value
RNA id XM_036968386.1
length 2767
RNA type mRNA
GC content 0.48
exon number 12
gene id LOC110508764
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10078045 ~ 10094991 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagcagTGTTCTTTCTAACTTCTCTGCCATATCCTGTCTTCCTACCTAGACAGGTTGACTGTTTCTTAGTTTAGGgagtttgtttttattttttaaagctgAGAGGTTGACTGTAGACAGTTATCCTTCTGACTTTACAGCTCTTCCTCTCATTCACTTGGACCTTCTGTGTTTTCATCACTTGGATTCTACTCTCTCTTCTTAGATTTTCCTACCTTGTTTTTTTCATCTCCTCTGAGCATAccattctctccctttcccccttcaccctctcttgTCCTCCCATCTCCCCACCGTTCCCTCTGTCCTGGTGGTTTTCGGGCTATGCACCATGCTCTCTTCTCCTACAATGATTCTTCAGCCTTACGGACTGCCCGTCTATCCCCAGGGTGCCCAATGTTACCCCAGCCTAGTACAGGGAGGCCCTGGGCAGGAGGCCTGCCCCGGCAGTGGTGACCCCACCCTCCCCCAGGTCTATGCCCAGCCTCCCTCATACCCTCCACCAGGACAAGCTCCTCCCACACCTGCAGGCAGACTTCCTCCTCTAGACTATAGTTCCGCCCACCCCAACTCAGAGTACCAGGAGCATCACCAGCTCAGAGTCTATCAGGGCCCGCAACACGAAGGGGCTGACACTCTGGCAGCCATTAGCACGGACGATGCCCTGGTTCCGGTGACCTCTGACTCCCAGGCTCTGAGCGTGTCAGTGTCATCAGGGGGCGGAGCAGGAAGTGGTAGCGATGAGGAGGGGTCAGGCAAGGCCCAGCCCAAGCGTCTCCACGTTTCCAACATCCCCTTCCGCTTCAGAGACCCGGACCTCAGACAGATGTTTGGGCAATTTGGCaagatcctggatgtggagattATCTTTAATGAGAGAGGGTCAAAGGGTTTTGGGTTCGTGACCTTTGAGAGCGCAATGGAGGCAGACCGAGCGAGGGAAAAACTGAACGGAACGATCGTTGAGGGGAGGAAGGTTGAGGTGAACAATGCTACAGCCAGAATAGTCACCAAGAAACCCCAAACACCACTTGTGAATGGTGAGGTTTCAGCCCCCGGATGGAAGATCAACCCTGTCATGGGAGCGATGTATGCACCTGAACTCTACACCGGTGAGTTTCAATttgcCAGTTTCCCCTACCCCGTAGCTGCTCCCACCCTGGCCTATCGGGGCTCACCACTGCGTGGGCGGGGCCGGGCTGTCTACAACACAATTCGCTCAGCTGCTGCAGCCGGACCCACTGCCATGCCCGCCTACCCTGGTGTGCTGTACCAAGATGGATTATATGGAGCTGAAGTCTATGGCGGGTATCCTGCAGCGTACAGAGTTGCCCAATCACCATCCGCTGCCACAGCAACATACAGTGATGGATATGGCAGAGTTTATGCTGCTGCAACGGATCCCTACCACCATTCAGTGGGACCCACGGCAACATACGGCGTCGGAACAATGGCCAGTCTGTACAGAGGGGGATACAACCGCTTCACCCCTTACTGAGCTGCCCAATGGGAGCCTGGAAGCCGTTCTGTGACCCCGCCACCTCATCCGGGATTGGCCAGTCCCAGGACAATAACTCAGGACAGGTTATGACATCACTGAGCTCTGTGTTACCTCCTGTCTGACTCCCTCCACGTGGAGACCGATCCAACCGACTGGACGTGTAAATACTGTAGTAGTTATTCACTATTTATTCTATCAGAGAATACATATAGGATAAAGAGCCTGATCTAATGTATAGACAGTTATTTAAAATCTTTATTTTACACTTAATCTGTATTGTTTGTGCCACAGATTTGTTCCAGGGTTTCAGAATGTAAAGATTTCTGCCTCCGTACCTGGGTTATAAGCTACTCTTTCACTATTCTAACAGAGAGAGTTGAATGTGAGCCATTTTATTTTTCATTGGCTGGACTTCATGGTGAAATACTGCAACTCAAGTGGCACAACAATACTGGTTTCTCTACATGGTGACCTTTGTAAAAAACGTTTTTGATCAACGTCTGAGCTTTTGACTTTTCAAGAGTCAAATTGTAGAGTACAATGACATTTTATACAGTTAAATAACTTATTTTGATGAGTTTTGTCAATGATGTAGCGCACTGTTTGAGGacgttgaagtgtgtgtgtgtgtgtgcttgtgtgttggAGTATGTGACGACATCAATACTCAAAGCACAAGCTATGAGAGACAGCAATGGCACTGGTATTGTTAATGTGCACAGTAATCTTTTTTGAAATGCTTCTAGAACCAGAAAACTATAATTTGCATAAAATGTACGTATGTTTTTGCTTTCCTAACAATCTACCTCTGATTCTGAAAAAGTTTCACTTGTCAAAAAAGCATTCAGGAGCCATTACTTCTCTCAACTAATTAActgtaacaaaacattttttcTTATTTTCATTGTTGAGCTTCTATCCATCTTCTCTCTGCTTTGCATAATGCTCACCCCACTTTATCATTTTTCTATGGCAGCCTTATTCTGGGTTTTACTTCGCTCTGCCTGACAGGCTCGTAACCTCTAATGCGCTTTCCCTTATTTCTTCTGTCCTGTTAAACTCTATGACGTTGTCTGGtttcctcttcctgttctctCGCCTGCTTCTCTCCATTCTGTTTGAGGATCTGTGTTCCATCCATAGAAATAATCAGATGAGTTCTAGTTCTATGGgtcatctctccttctccatcctgtACTCGAGCTTCACTGTTGTTTATTTGCTGTTGACCTCTCAATAAAACATTGTTTCTgtttccctttcctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254489 lncRNA upstream 2083 10074725 ~ 10075966 (+) True G222805
TU254526 lncRNA upstream 3675 10073870 ~ 10074374 (+) True G222839
TU254525 lncRNA upstream 4277 10073542 ~ 10073772 (+) True G222838
TU254499 lncRNA upstream 53195 10024469 ~ 10024854 (+) True G222815
TU254497 lncRNA upstream 53934 10023515 ~ 10024115 (+) True G222813
TU254465 lncRNA downstream 1192 10096183 ~ 10099336 (+) True G222782
TU254459 lncRNA downstream 4465 10099456 ~ 10105221 (+) False G222778
TU254460 lncRNA downstream 4465 10099456 ~ 10105017 (+) True G222778
TU254466 lncRNA downstream 20937 10115928 ~ 10116381 (+) True G222783
TU254542 lncRNA downstream 29083 10124074 ~ 10124311 (+) True G222855
XM_036968368.1 mRNA upstream 59608 10006029 ~ 10018441 (+) False cnot3a
XM_021589601.2 mRNA downstream 40900 10135891 ~ 10140365 (+) True LOC110508782
XR_005040844.1 mRNA downstream 85447 10180438 ~ 10197754 (+) False LOC110508830
XM_036968390.1 mRNA downstream 95003 10189994 ~ 10226812 (+) False LOC110508830
XM_036968392.1 mRNA downstream 96389 10191380 ~ 10223511 (+) False LOC110508830
XM_036968397.1 mRNA downstream 96389 10191380 ~ 10223511 (+) False LOC110508830
TU254395 other upstream 164951 9903112 ~ 9913098 (+) True sphk2
TU253897 other upstream 396297 9679760 ~ 9681752 (+) True G222353
TU253887 other upstream 466910 9606305 ~ 9611139 (+) True G222345
TU253820 other upstream 571263 9502604 ~ 9506786 (+) False LOC110520820
TU253800 other upstream 632345 9445047 ~ 9445704 (+) True G222287
TU254560 other downstream 179134 10274125 ~ 10276173 (+) True LOC110508845
TU254625 other downstream 216691 10311682 ~ 10312252 (+) True LOC110508886
TU255198 other downstream 621660 10716651 ~ 10750403 (+) False LOC110520833
TU255234 other downstream 658626 10753617 ~ 10767669 (+) False LOC110520833
TU255248 other downstream 658626 10753617 ~ 10767669 (+) False LOC110520833

Expression Profile