RNA id: XR_005040845.1


Basic Information

Item Value
RNA id XR_005040845.1
length 2432
RNA type mRNA
GC content 0.51
exon number 13
gene id flcn
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10167784 ~ 10180249 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACTCCCCTCATCACATGACGACTACCACTAACCTAGAGAGCGAGCGTATCAGAGCAGTGAAAAAGTATAAACAAAGGCTAATACAGCAACAAGACTACTTTTGTGAATTAATTAGAAATTAGAACTTGCGTGTGCATTGGCGACTTATTTCCCATGCTTTTAAGAAAAATGATCATGATCTATTTTCGAGACATTGGTTCGTGCTGTGCTAGGGGTTAGCTTGTCAGTAATGTCCTTTTGTGATGTTTTGATGCAATCTGAATACCTGTAATTTGTTGCAGTGATTGTTCACGCTGCTTAAATCAAGATGAATGCTCTGGTAGCTCTCTGTCATTTCTGTGAGCTCCATGGCCCCCGGACCCTGTTCTGCACCGAGGCTCTGCACCCCCCGTCCCCCACACCCTCCCAGGCTGGCGCCCCCATACCCGGGGACAGAGAgtcggacagagagggagagggactcaCCATGAGGGCAAACAGCTCAgctacacagagaggagacatgtgCGAGGGCTGCCGGTCTCTCCCAGCGTCTCACCCTGGCTTCGTCAGCGTGGACAGTGAGACAGGCATCCGGTTCCTCAGCCACCAACACCCCAGACAACCCCAGCTCTTCAGTGTGGTCCGCCAGGCCTGCGTACGGAGCCTCAGCTGTGAGGTGTGTCCAGGTCGTGAGGGTCCTATCTTCTTTGGGGATGAGCAGCATGGTTTTGTGTTCTCTCACACGTTCTTCATCAAGGACAGCCTGGCCCGGGGCTTTCAGCGGTGGTACAGTATCGTCATGGTAGCCATGGACAGGATCTACCTCATCAACTCCTGGCCCTTCCTGCTGCGCCACCTCAGACTCACTATACAGAGTCTACAGAGCACAGCACTGAAGGTGTTTGAcagtgagcagtgtgtgtgtcctcagagGGCGGTGAGGATGAACAGCGTGttctctcctgctgtcttccCCCACCAGAGGAGTGGTAACGCGGCCCGCTCCCTGCCCTCCCTCACCCAGCACACCAACCTCTGGGCTAGCCTACACTCCTCCTTCAGCTGGTTACTGAAGGCCTGTGGTAGTCGTCTGACAGAGAAGCTGCTGGAGGGAGCTCCCACAGAGGACACACTGGTtcttatagagagacagacagAGCAAGAGGAGGAAATGAGTTGCTGGGAAGGAGCAGAAGGGGGCGGGTCTAGACCCCAGTGCCACCAATCGGAGAGCGAGCTGTACAGAGACTTCTTGTTTGACGAGGGGAAAGCAGAGGGGTATCCTGGTCCAAAGTTCAGGTCCTTGAGACATTTAAGACAGGTGCTCGGGACCACTGATTTCCGCCAGCTAGCATGGCACGTGCTCATGGGAAATCAGGTCATATTGAGAGGGGCTGACCCAGGGCTCATCCATTCAGCATTCACCATGTTGAAGGCCTTGCTCCCGGTGGGCTGTGTCCGCTCTGTGACGTACAGCGCCCAGTATGAGGAAGCATACCGATGTAACTTCCTGGGCCTCAGCCCTGACGTGCCCATCCCCACACACGTCAGCTCCTCAGAGTTCTCAGTGTTGGTGGATGTGGTCAGTCTGGAGAGGGGCTCTCTGTACTCTGCTGCTTGTGGTGAAGACATCCTCTCACTCTATCAGTTCAACATCAGCAGTACCAACTCACAGCCTACAGATAAAGGTCCCACGTTGTTGAATAAGATGGAGGTGGCGTTGTCCAATGAGAACCTGTCAGTGGACGTGGTCTCTCACTGTCTGCTGTGTCTGAAGGAGGAGTGGATGAATAAAGTGAAGGTGCTGTTTAAGTTCTCCAAGGTAGATGGGCGTGGGAGGGAGGACACCCAGAAGGTGTTGGCCCTGCTGGGTGCCACGGGGCCTGGGGAGGAGGACAACGTCAGGCTGCTCAAGTTCTGGATGACGGGACTCAGCAAGACCTACAAGAGCCATCTGATGACCGCtgtcagaggaggggagaggcccCTTAGCCAGTGAGAGAGCAGTGGAGGAGAATATGAGCGGTAGCGGGAGAGACCATACAGCTGGAGTGaaatatactgtatctcagcctcctctgcatgcacctactactgtatttggacagacagagagaaagggaaagaaaaCGAGTGTGAATGAGTGAGTAATGACAGATAGACTGAGGGATATGTTTGTGTCCAGGTGCTGACTTGATTCAAATCCATCCTTCACAATAAAGAACAAAAAGCCACTTCATGGGTCAGttttaaattaatttattcaGATACTAATTACTTATTATGTTTTACATAATGTATCTGGGCTTTTTTATAAATCAAATGGGAATTATTATAGGAACACTGTCCACAATTTTATGTCTAAATTATTATACAAGTTTCAATAGTTTTGTTAACACATTGTACAGAgatattcaaataaaataactgCTTGAGCTGAAACTGAAA

Function

GO: NA

KEGG:

id description
K09594 FLCN, BHD; folliculin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254855 lncRNA downstream 14078 10153345 ~ 10153706 (-) True G223115
TU254852 lncRNA downstream 23961 10143309 ~ 10143823 (-) True G223112
TU254820 lncRNA downstream 62759 10099461 ~ 10105025 (-) True LOC110520825
TU254817 lncRNA downstream 78422 10086852 ~ 10089362 (-) True G223081
TU254795 lncRNA downstream 142928 10024459 ~ 10024856 (-) True LOC110520824
TU254899 lncRNA upstream 37212 10217461 ~ 10219349 (-) True G223148
TU254848 lncRNA upstream 45354 10225603 ~ 10260865 (-) True G223108
TU254915 lncRNA upstream 83011 10263260 ~ 10266898 (-) True G223163
TU254922 lncRNA upstream 118212 10298461 ~ 10298666 (-) True G223169
TU254930 lncRNA upstream 126438 10306687 ~ 10306960 (-) True G223172
XM_021589630.2 mRNA downstream 3817 10160334 ~ 10163967 (-) True LOC110508798
XM_021589618.2 mRNA downstream 16639 10144533 ~ 10151145 (-) True LOC110508790
XM_036968381.1 mRNA downstream 38882 10099437 ~ 10128902 (-) False LOC110520825
XM_036968382.1 mRNA downstream 38882 10099437 ~ 10128902 (-) False LOC110520825
XM_021589539.2 mRNA downstream 90392 10074725 ~ 10077392 (-) True rps9
XR_005040846.1 mRNA upstream 11108 10191357 ~ 10191771 (-) True LOC118945753
XM_021589664.2 mRNA upstream 46647 10226896 ~ 10229409 (-) True LOC110508823
XM_036968540.1 mRNA upstream 216815 10397064 ~ 10410486 (-) False pitpnc1b
XM_036968556.1 mRNA upstream 216815 10397064 ~ 10410487 (-) False pitpnc1b
XM_036968564.1 mRNA upstream 216815 10397064 ~ 10410487 (-) False pitpnc1b
TU254793 other downstream 144581 10020648 ~ 10023203 (-) False LOC110508724
TU254794 other downstream 144599 10020648 ~ 10023185 (-) True LOC110508724
TU254805 other downstream 152892 10012961 ~ 10014892 (-) True G223070
TU254786 other downstream 164890 10001415 ~ 10002894 (-) False LOC110508696
TU254343 other downstream 484413 9679908 ~ 9683371 (-) False LOC110534283
TU255954 other upstream 890697 11070946 ~ 11073750 (-) False znf628
TU255996 other upstream 991871 11172120 ~ 11174367 (-) True G223942
TU256045 other upstream 1095668 11275917 ~ 11278628 (-) False G223969
TU257101 other upstream 1547113 11727362 ~ 11741584 (-) True LOC110509576
TU257113 other upstream 1572602 11752851 ~ 11753680 (-) False G224869

Expression Profile