RNA id: XR_005040844.1


Basic Information

Item Value
RNA id XR_005040844.1
length 1899
RNA type mRNA
GC content 0.54
exon number 9
gene id LOC110508830
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10180438 ~ 10226836 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTACATAGACCTACATTTCCCACAAGTCCCCTCAGTACAAACATACCAAAGGTCAAAGTGCACATATACGGTAGTTTCAGACAGAATCTTTCGTATATCTGTTTATAAGTCAGAGGGTGTACATTCAGGTTGATTGACTATGGCGTCAGAGGAGACAGGTGTGCCTTTGGAGGACAGGAGAGCACAGGAGCATAGAGCTACAGAGGGGCCAAAGACAGAGGTCCCAGCCAGTCCCAGCCAAGATAGACCTCAGGTGATAGCAGGCCAGGAGGAGGGAGCAGGTGTCTGTCAGTTCTTCCTTTTGGGAAAGTGTCGTTTTGGAAACAGGTGTCGTCGATCTCACAGCACTCCAACATTAGATGACCCAGAGGCTGCTATAGACCAGGAAAACAGgaaggagggagaaaaagagggacaACTCAAGAAGAAAGCAATAGGGAATAAAACAAACCAGCCAAAAGACACAGAGGGAAAAGGATCAACCAAGAAGCCCCGCATGCGTACAGCCGATGACGTCATCTCTCGGATCCTGTGGGACCCGTCGGTGGAGCCGGCGGACTTTGTGGTGGGGTACGTGGACCGCTTCCTTGGGGTGCTGGAGCGGCCCTTCTCTGAGTTCAACTGGGACACCGACCCCTGCGATTGTGACTACTCCTCTGAGCTAGCCCTGCCCAGACACAGGATTCAGTACTTCACCCATATAGGGCGTAGAGTCTGGGACCGCAACAACAGGACTGACAGGGTGTTTGGATCCACTGGACAGTGTCTGGCAGCCCCCTTTgggcaggaggaggagcaagagCAGGGGACAGGGACACAAGAACAACAAGACCCAAAAAACGACCACCGTGAATCAAGAGAAGAACAAGATGGCATCATCACTACAGAGGAGGGTGAAGAGTCCCTGATAAAACAGGATGTTGAAAACGGACACTTGGAGGAAAGAAATCAGAGCAAGACAAGTATTCAGGTGCCTGAGTCGACCAGACCAGGCACAGGAAGTACTCCACTGAACCAACAGGAAGCAAGAAGAGAATCAGAACCCTTGGAAGAGGAAGTTGGGAAAGATTCAGTTTTAGTCGTCATAGCAGACCAGATGTCTCTATCCCAGAGTGAAAGCGAGAGCAGGGGGGAGGAAGGTGAGAAGGAGGAAGAATGGAAAGATTactgggatggagagaaaggcCCAGACCTAGCCCAGTGTCCGTCTGTACCTGtggagcagagaacagagaggggtggaggCCGGCCTTCCAAACGTAAGCCCACCCACTTCATCACCTTCCGGGCCAACACTCCCgccatcctctcctccttccagcaCCTTCAGGAGGAgctcacctccctcctcccctcatccgCCCCTCATTGGttgcccccctcctccctccacgtCACCCTCTGTCACCTGGTCCTCCCCGGCCCAGCCGAGGTCATTGCCGCCGGGGAGATGCTCCAACGCTTCGCCTACCTGGACCGCAACCCCCCTGTGGCCGTCTCCTTCCCCCTGAAACTGAAGCACTTTGGTGGGAAGGTTCTCTACCTGagcccccagcctcagccccaccTCCAGCAGCTAAATGCTGGCCTACAGGAGGCCTTCAGAGAGCAGGGCTGGCTGCACAGGGACTCCTTCAACCCACGCTACCATCTCACCCTGGCCAAGGTGAAGGACCAGGAGGAGGCGAGGGTGTTTGAGGGGGTGGGGGAGCTGAAGGATGAGTTTTTTTCCCAAGAGGATCCAGCGTTGATGGTTGGCAACGGTATACCTCAGTGAGTGTGTAGATATTTGACAGAACACCAGAGAAGAGCAAGAGATAGCAGAACACTCTCCCAACGCTACAGTCAAAGTTCCTTTCaacagggtggaggagggggggttaGGTGATAGACTATGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254577 lncRNA upstream 26743 10153218 ~ 10153695 (+) True G222879
TU254573 lncRNA upstream 30290 10149049 ~ 10150148 (+) True G222875
TU254545 lncRNA upstream 51195 10129028 ~ 10129243 (+) True G222858
TU254542 lncRNA upstream 56127 10124074 ~ 10124311 (+) True G222855
TU254466 lncRNA upstream 64057 10115928 ~ 10116381 (+) True G222783
TU254548 lncRNA downstream 65488 10263242 ~ 10265276 (+) False LOC110508861
TU254549 lncRNA downstream 65643 10263397 ~ 10266860 (+) False LOC110508861
TU254551 lncRNA downstream 65643 10263397 ~ 10265276 (+) False LOC110508861
TU254550 lncRNA downstream 67650 10265404 ~ 10266860 (+) True LOC110508861
TU254610 lncRNA downstream 91667 10289421 ~ 10289629 (+) True G222910
XM_021589601.2 mRNA upstream 40073 10135891 ~ 10140365 (+) True LOC110508782
XM_036968385.1 mRNA upstream 85447 10078045 ~ 10094991 (+) False LOC110508764
XM_021589689.2 mRNA downstream 35398 10233152 ~ 10239964 (+) True LOC110508838
XM_021589732.2 mRNA downstream 47574 10245328 ~ 10266902 (+) False LOC110508861
XM_021589719.2 mRNA downstream 69995 10267749 ~ 10276176 (+) False LOC110508845
XM_021589701.2 mRNA downstream 69996 10267750 ~ 10276176 (+) False LOC110508845
XM_021589709.2 mRNA downstream 69996 10267750 ~ 10276176 (+) False LOC110508845
TU254395 other upstream 267340 9903112 ~ 9913098 (+) True sphk2
TU253897 other upstream 498686 9679760 ~ 9681752 (+) True G222353
TU253887 other upstream 569299 9606305 ~ 9611139 (+) True G222345
TU253820 other upstream 673652 9502604 ~ 9506786 (+) False LOC110520820
TU253800 other upstream 734734 9445047 ~ 9445704 (+) True G222287
TU254560 other downstream 76371 10274125 ~ 10276173 (+) True LOC110508845
TU254625 other downstream 113928 10311682 ~ 10312252 (+) True LOC110508886
TU255198 other downstream 518897 10716651 ~ 10750403 (+) False LOC110520833
TU255234 other downstream 555863 10753617 ~ 10767669 (+) False LOC110520833
TU255248 other downstream 555863 10753617 ~ 10767669 (+) False LOC110520833

Expression Profile