RNA id: TU254550


Basic Information

Item Value
RNA id TU254550
length 1457
lncRNA type sense_over
GC content 0.34
exon number 1
gene id LOC110508861
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10245328 ~ 10266902 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAAAATCTGACATAATTCAGGAGATAAAATGACTGACATGTTGATACAGATTTTCTTTTGACAATCTTCCTATACACAATGGTAACTTACCCAGTGAGCAAAATGGCATCTTTTAGACGTCCATGGACGTCGGCGTCAGACGGTGTTCACTGGGTAGTCCGTGTCGGTTATTGTCATGATTACAACAAGTGTTATTATTAATGATTATTATAATTGTTGTTATAATTAATGGTTATCTTATAGTAATGATGTTGGTGTTATTTTTCTTAGTGAGATTTGAAGTGTTTACATGTTTTTAGATACCTATCTTTCTCAtgacattttgtttgtttttgttacaTCTGAACACAAAATGGGGATTCAAACTAACACTGTCTAATCTTGATGCATGTCAACTCCATGGCTTGGTAATGCATTGACAACATGCCTGAATACAGGGCTTTATTACAGTATGTTTGAAGACAAAGGCCCAATTACAAACCTCTCCCTAGTCCCTTTCCCTAGATGGAGCCTTCTATCTAGACTATTTGAAAATATTGCATAGGTATTAGCAAAAGTTGTGTTGGTTCCACGTGTTGGGGTGGAATCATTACACTCACCGTTCACAAGGTCAGACAATATTGATAGGGACTAGGGAGGGGAAAGTTCTGGGTCTGGGACCAAATTGAAACACTTGCTAACACCACAGCCTAACCTAATAAAATCCAAAGGGTTAacacatgatgtcacaatgtatgTGTTTACATTAATGTCTTAAACACAGGTAGGTAAAAagggtataacagtaacaaccTGAATGTTCAGTAACAGTGTCTTTTTTCAGGGAATTAGGACAGCTAACCTAGTTTTAGATTTGTATTTAAGTCACAGAAAGTCTGTAGCAATGTCTGTACTATCGCCACAAGCCATAACCATTGAAACAGTCATTACATACACTTCTGCCATTATTTTGTACATGGTAAACCTTTTTTTGTGTaagtatattgtattttgtatagCTAGTACAATCAGAATATTCTAATGGGTTGTGGCTCTCTTCTATAACACATTCATTTGAGGCTTCAACAAATTATATGTGAGTATTTAGTGGAATGTACAGTGACCACCCAAATGCTTAACATTTAAcatatttctatatagcctattATGTGGCAACAGGGATATTTTTGATGAGTAATGACACATAACACATGTAAAATAGATGGTGAATAAAATAAGACACAAAGAGATGAATGAATAGGTGTATGTTTCGACACCATCATTAATTAATTTAAACCTATGTAGAACGACGAAGGATAAATCTAAATCTAGATTTGTATGAGATTATATAGATTTGTATGGGATGATATTTACAAGTGAACTTCATGAATGTTTTCATGACTATTATTAATTTTAATATATAAAGGCCTACTTTTAATTTCTCCAATGCATTTTGATCCCCTTGGATGCAGCAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254548 lncRNA upstream 128 10263242 ~ 10265276 (+) False LOC110508861
TU254551 lncRNA upstream 128 10263397 ~ 10265276 (+) False LOC110508861
TU254577 lncRNA upstream 111709 10153218 ~ 10153695 (+) True G222879
TU254573 lncRNA upstream 115256 10149049 ~ 10150148 (+) True G222875
TU254545 lncRNA upstream 136161 10129028 ~ 10129243 (+) True G222858
TU254610 lncRNA downstream 22561 10289421 ~ 10289629 (+) True G222910
TU254611 lncRNA downstream 23692 10290552 ~ 10290846 (+) True G222911
TU254616 lncRNA downstream 32288 10299148 ~ 10299461 (+) True G222916
TU254621 lncRNA downstream 35344 10302204 ~ 10303215 (+) True G222918
TU254623 lncRNA downstream 38004 10304864 ~ 10305088 (+) True G222919
XM_021589689.2 mRNA upstream 25440 10233152 ~ 10239964 (+) True LOC110508838
XM_036968400.1 mRNA upstream 38568 10191380 ~ 10226836 (+) True LOC110508830
XM_036968393.1 mRNA upstream 38592 10191380 ~ 10226812 (+) False LOC110508830
XM_021589719.2 mRNA downstream 889 10267749 ~ 10276176 (+) False LOC110508845
XM_021589701.2 mRNA downstream 890 10267750 ~ 10276176 (+) False LOC110508845
XM_021589709.2 mRNA downstream 890 10267750 ~ 10276176 (+) False LOC110508845
XM_021589752.2 mRNA downstream 11281 10278141 ~ 10287089 (+) False LOC110508875
XM_021589761.2 mRNA downstream 11292 10278152 ~ 10287089 (+) True LOC110508875
TU254395 other upstream 352306 9903112 ~ 9913098 (+) True sphk2
TU253897 other upstream 583652 9679760 ~ 9681752 (+) True G222353
TU253887 other upstream 654265 9606305 ~ 9611139 (+) True G222345
TU253820 other upstream 758618 9502604 ~ 9506786 (+) False LOC110520820
TU253800 other upstream 819700 9445047 ~ 9445704 (+) True G222287
TU254560 other downstream 7265 10274125 ~ 10276173 (+) True LOC110508845
TU254625 other downstream 44822 10311682 ~ 10312252 (+) True LOC110508886
TU255198 other downstream 449791 10716651 ~ 10750403 (+) False LOC110520833
TU255234 other downstream 486757 10753617 ~ 10767669 (+) False LOC110520833
TU255248 other downstream 486757 10753617 ~ 10767669 (+) False LOC110520833

Expression Profile

TU254550 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 30.
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TU254550 Expression in each Bioproject

Bar chart with 16 bars.
TU254550 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU100360 False 3328 lncRNA 0.36 1 NC_053118.1 23079812 ~ 23083139 (+)