RNA id: XM_021589709.2


Basic Information

Item Value
RNA id XM_021589709.2
length 7388
RNA type mRNA
GC content 0.52
exon number 3
gene id LOC110508845
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10267749 ~ 10276176 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCTTTTacccccccccaatttttttttttttaataaccgACCGTCCAAAACATTTAAGCCGACAAAAACATCACCAACTCATCATTACCAATGGGGATTGATGCTGTCAAATGGCGAGGAAAAGGTTGCAGACTCAAATACTGAGTATTTAAAAGTGAAAGGGAGCCGAGCATTCACCTAGCTCAGCATCAGTGAACATGGCTATGGCTAACGAGTCGAAAACAGTACGCAGAAATGGAGAGCTAAGCGAATGATAGCTAGATGGTAGGAAGGCGTGACAGGCCGCATCCTGAacttatacttggatgtGATTGGTCATCTACACTACTAATGTGAAAGGCAATCAAAAAGATGCGATTGGGAAATAAAATCCATCTCCCTCCGCTGTCGGGCAAACACATATTTTGACTCATTGACATCTGTCAAAATTCAAAGTGAGGAGAAGAAAACATAGTCTCTTCCCAGAGAATGAGTGAATAAACTGACGTGGATGAAGGGAAACGATGATATGGATGAAAACACTGTAACTGAAACAGCCAACCAACAGCTGTTGACTGAACTGCTCTCTAATAAAGATTGTTCTGTGCCATAAAACACCAAGAGACCGAACAACCAACAACAGACCAACAACAATTGCACACCAAAACAAGGCCTTTTCTCCCCATGAAACAGTACAAAGTGTTTAAGACTAAATAAAATGGCACCAACCCATTAAGATAAAAAGAGAATACGGTATCCACGTTGAAAAGAACTGTGAGAACTGTTCGCATTTGAGAAAAAATACCCTTTACACTAAATAACCCCATTCCCCACACACTTGCTCCCTCTCCTGTTGGATGGAGAGTGGGGGCAGTGGGCGATCGGGCGGAAGTAGCAGCAGCCGAAGTGCGCGAACAGGGGGGACCGGCAGTGTTATCGGGCGGAGTTCGGGATCGAGCCGAGGCGACTCAGGCAGTTCCAGGTCAAATAGTGGCACTGCAGGATCCCTCGGCCGAAGCTCTTCCATTGGCGGCAGTGGTGGGATCATTGTCGCTGCTCCTGGTGCTGGAGGTGTGGCTCCTGCACCCCCATGTGCCAGTGAGTGGGAGATGTTCCAATTTGGAAAATACAATTTGGACATAATAGAGATGTTAAGCGGACACCAGGCCCATCAGTTCAAAGGCCTTGGGTTAGAACGACAGCTACAGCATCAGCAGCAGGTGCAGCTTCACCAGCACCAGctccagcagcaacaacaacagcaggcCGAGACCTCAGGAGCTCTCCTGTCTGGGCTAGGCCTTGGGTCCCTCCAAGGGGCCAGAAGCAACGCCTTTTCCGATTCTGCCTCTATTTTCGCAAAAATGAgcgcccctcctcctccccctctacaaCAACAACCTTCTTCGTCCTCACATAGCTCAAGATCCAAGTCAAGCAAGATGAGTAGCAGCAGCTCAAGCCATGTGTCGGGCTACCCACAGTTCCTGCGTTCCTTCCACCCGACAGAGGCAGCTCTGGCACAGGAGCAACTGCATTCTGGGGTCAGCCGCTTCGAGCACTTTTCTGGGGGTAGCAGTGGTGGGGGTGCTGGGGGGTTGGGACTTgccccccctccaccaccccctctGCATCCAGGCCTCTCTGTCCCCCAAGCATCACCTGGCCCTTcatcctcttccccctccccctccagttCAGTGGTAACTAACAATCCCCCTAGTAGCAGTGCAGTCACCTCTCTGGGACACCAGCTGGTTGGGGCCCAGTCTGATGCACGGAGCCTTCATCAGCAGTTCAGTTGCATGCTAGCTGCTAATCAGTACTTTCTCTCTGGGGTGCCTGCTAACGCTAGCTTAGAGCAGTTTCTGGTTCAACAGGGAACCCACAACCACCTGGGGATAGGTTTAGCTCAGAGTGAGGGATCTAGCTCAGGCCTTGCTCCGCCTCCAGCTCTGCATTCCTCTCATTCGCATGGCCTCTCTACCGCTCAGccacagcagcagcctccacagcagcagcagctgccTCCCCATACCCTGTCCCACCCCCACTCGCACTCCCACCCTCACCACCCCCTACACCCAGGCTCCCAGCCCTCTTCCCTGGGTGGTTTTGACTTCCAGGGCATCCCAGTGCTCTCCTCCAACCAGCTGGCCTCTCTGATGCAGCAGGAAGCAGGCCTGCCGCTCCCCCTGCCTCTTCATCTGTCCCTCTCCAAGGATGACGGCAAGGGGGACAGCAGTGGGGGCggaagcagcagcagtagaaggaAGAAAGCGATGGCTGGCTACCTGCCACAGAGGAAGTCAGATGGCggcagtaacagcagcagcggCCACAGCAGTGGGAACCCCAATGCTAGCAGCATTGCAGGGGGGCTGGGCCACGACCCCTCCCCAGggctggttgggggggggggcggaggggTTGGCATGTCAGGTTTGGGAGGAGATCCATCCCTCCTtgcctcttcatcatcatcatcatcatcatcagttgtctcatcctcctcttcctctggccCCTCCACTGCAGCATCAGTTCTGGTTACTAATGGTTCTCACCTATCCAAACCTGATAACATGGGCTCCATGCCATCTGCATCTACACAGGCtgacactgagcccctctataaCTGTGGTGAGTGTGGCAAAACCTTCACTCACCTCTCCAGCCTTCGCAGGCACCTGCGTATGCATGAGTCTACGGCAGCAGGTACTAGCAATAATGTCAGCATTAACCCAAACCCGACTCATATCCAACCACTAACTGACCCCACTCTCCCACACTCCACCCAGGAACACTCCACCCAGGATCTGAACTCTCAATCTAACTCGCTGTCCTCCCAACAATCCTCCAACTCAGTCCAGGCCTCATCTTCCTGCCCCAGCCCTGACAAGACCTTCAATTGCTCAGATTGTGGCAAGCACTTCAAGAAAAAGGGGCACCTCCTCCAGCATGGCGTCATCCACTCAGAGGCTCGCCCGTATGGCTGCAGCATCTGCTCCCGGGCTTTCAACCGCCGTGAGTCGCTGACGCGACACGAGAAGATTCACCAGGACAAGCCCTTCCGCTGTCCAGCCTGCGGTCGATGCTTCCGTGAGAGTACCTCTCTACTCAACCATGCTGCCTCTGGCACATGCGGCAAGCCAGGTAGGGCATCAAAACCACAGGGCAGCAGCAAGGAAGGAGCTGTAGGGGAGGGCAGAATGGGAGGAGGGGgcggaggagaaggtggaggaggtggggaTTACCAGGGTAGTAGAGGGGTGATTTATGGGAAAACTGAGGAAGATGAAGAGGGTGTGATCgtgggaggtgagggaggtcagAAGTCAAGGCTAGGGTGTGatggtggtctgtttcagtcagAGAGGGGAGGGAATGCTAACAGCAGGGACAGGCCAGATggtaaataccccactgattactCTCGGAATCGTTACACAGGCTACCATGACGACCACCGTTCTCAAGGTAACCCGTCTCCGTGTTACTCTGGAGCCTCCCCCTGTGGCAGTGGGATGGCGGGCCCGGCGCTGAGGAAGGCACCATTGGCCCCGACGCTGCACCCCCACCCTCAGAGTCAAACccaacatcaccaccagcagcacctccccctgtcctctctcctggatGACTCTGAAGACGacgtcaccagctctgtcaacaACGCCATCTCAGCCATTGCCGCTGCAGCTGCCGCCAACTGTGATATGAACAGTGGGAACAGAGGCGACGATAGGAGAGATATCATCGGAGGACTGTTGGGTGGGCTGGACTTAGGCCCCTTGGGGTCCCCTTCATCAACATCTGGGATGGATAAGACCTATAGAGGAGCAGGGAACCAGGATGGTATGAGTGGTAATATGAACCACAACCAACAGCAGGGGAATGATCCACAGAACCCTGCTGCCAAACCAAAACGTCCCCGTAAACCCAGAAAGCCCAAAGACCCCAACGCTCCCCCCAAACGCAGGCAGTACACCCCCAGAGCTCCCAGAGAGTTGAGCAACATCCCGCGGCCATATCTGTGCAGTGTTTGCGGCAGGGGGTTTGCACGCCGCGAGACCCTGCGTAGGCACGACCGTGTCCATACTGGGGAGAAGCCCCACCGCTGCAGTACATGTGGGAAGCACTTCAGAGAGGCCTTCCACCTCACCAAGCACCACACCGTTCACTCTGGGGAGAAGAACTACAAGTGCAGCCTGTGTGGGAAAGAGTTTGGTTACTCCCAGAGCCTCAAGAGGCACGGGAAACTCCATCAGAAAGGGGAGGTGGAAGAGGTCCCCACAACACCAGGAGGGGAGAACCTCAACAACTTCAACACAAACCCGTCATGTGGGATGGGCCAAGACAGGGAACAGAACCAAGGAAACAGCTCCTCCTCCTATTATTCATACCCCCAAGATGTCAAGCCTCAAGGCTCCAACAGCCAGCCCCCGCCCAGGCTCTACACCTGTGCCATATGCTGGAAGTCTTTCCGTCATCACTTCCACCTGACGGCTCATCACCAGACGGTCCATGAGAACGGAGGTGAGAAGCTGTTCAGCTGCGAGGTGTGTGGGAAGGCCTTTGCCTACTCCAACAGCCTCACTCGACACAGGCTGTCGCAGCACGGCCTGGCCCGCACCGGCCCTGACAACGCACAAGGGGACGGCAGTGGTTCAGGGGTAAACAGTGCAGCTGGTGGTGGAGTGAGTGGGACTGCGTCAGAGAGCGAGGCAGCCACCAACGCCCTTCTTCAGATGGCACCTTCCACTGAGGGCCACGGGGGGCAGCAGAGTCACAGTGTTGTCACCCACagtcatcaacaacagccacctcAGCCCCCAGCTGGCTACTCCCCCCTTTTCTATGATGCTGGTACGGCCCACTCCTCAGCCTCCAGCGTCCCTCCCTACTCTCAGCCCCTGCCACCCAACTCCACAATCATGCCCCCTCAGCACCAGCATTCCCCAGCAAGGGTGAAAGGGGAGCACATTTACCCAGCTGGGTCTAGTAGTCACACCCTTCACACCACAGCTCCATTCCAGCCCCTCACGGAGCTACCATCcgaccaccatcaccaccacaaccaccaccaccaccattcttcacatCACCACCACCGTTCAGAGCCACAGTCCCAGCAACCACATCACAGGAACATCCAATCACACGATGACATAAGGAGGCACAAGAAGAAGAGAAAGTCcgacaggagggagggaaggggggacaTGTGGGGGGAGTCCTCAGGCTTCgtcagagacgaggagaggaaagaccagaggaagaggaggtctgTTTTGCAAAAACAGCTGAGGAAGAAAAAGCTTCTGTTGAAGATTAGACGAGGGGGGGAAGCAGGAGGGGGAGGATATGAGCTGGTCACAACAAGAGGGATGAAGATACAAATCCTGTCATCTCTCAAAGTCCCAGTGAAACGTTTTGCCTGCTCCATCTGTCCCCACGCCATGTTCGCCCGCCAGGCCGGCCTGCTAGCCCACAGGGCAGCTAAACACACCCAGAGAGTCCTGTCCCCCCAGGAGCGTCTGTGCTGCGGTGTGTGTGGGAAGCAGTCTCACAGGCTCCTGGAAGCATTCATCCACCGGGCGACTCATCGCGCCCGAGGGTCCTTCTCCTGCAGACGCTGCTCTGCTCGCTTCTGGAACGCCCCCCTCCTCCGCAGGCACAAGGTGACCTGCCGACATCGGGCCAAGGGACTTCCACGAGGTGGCGCTATCCACCTGAAGTTGTCCAAGAGGGCgggggagaggaagagcagagaggagcagggggagatGTCGCACTCCCTGCTTACATTGTACAGATACTGAGCTTGCTGACTTCTAAGGTAGTGGTTTAGATTGTCATTGATAGGAAAGGGAGAGGTTATCAGTTTTGGACTATACATAGAAGAAGATGGACTTTAAAAAACAAAAGCCTTTGGGGGGGGCGATTGAAttggtctggtgtctgtctggaCCTCATCAACTCAACTCACTGACTGTTAGAACAAGTGTTTTAACAACATGAACTACTGTAGATCAACCAAGGATCACCCTGAATTCTTCCATCCAACTGTATGGGAGGATGTTGAAAGACATGACTGTTTTCATATGATCATTAACCCTTAAGTGCATTGACACTATGCTTGGCTGACACTGTGCAGTTATTAGACATGTTTAGGTGATTTGACCTGCTAATTTAACTCTACCCCCTCAGCCTTACTAGCATCCCTTCTATACCCCTAGCTGTATGATAACTCTGTCTCTGCTGTGTACTATGTCTTGTTGATGTTCACCTAGAGCCCCTTTGGGGATTTTTTAATGTAAAAAGTGCATTTAGTAGGAGTAGGGAGAGGGTGGGACACAGACTTCTGGTTGGTAGAGAGGCAGTCTGTTTGTCGGTGCATGTGTGTTTTTTGGTCAGTTTGTTGCGGAGGTTGTGAACTCACTATGTGACGATTAAAAAGGACGTGTTTTAACCGTAAGTTAACAAAGTCCTGAAAAATGTCCCCAGTGATTTAATCACgtctttaaaaatacatttgagaaTCTTAATAGATTGAAGTGAATACCACTTCCAGACAAAAAAAAGTGTATCTTACAAAAAGCCTTGCTAATCATGACTTGATTTAATTTTCATGCCTGTGGAAACAATTGTAGCTTTTATACCAAGATATTGAGATCAAGACAGGATGAACACAGCTCACTGTAACGTATATTGTGTTAATATCTTATCACTGCTGTTTTTCTCTTTTCACAAAGTACTTTATTTAGCTTTCACTGTTCCTTCATAGTAGCAAAAGCAGTTATGATTACATGTATTAATGTGTGTTTAACTCTATCTGTCTACCTGCCAAACCTGGATTCtatcctgtcctcttctcttattttttgctgagttgcAATCATGTTCATAACCCTGTCAGGCCTTGTTTTATCTTCTAAAGAAAAAGAATAGTTCTAAGTACATTTCTATCACTTTATTTACTTAAAACAAAGATAGTTGTTGATTATACTTCAGCATTGAATAAAACATAAGTGTTCTCTGCTGTGCTTTTTCTCCATGTATCATGTAAGGCTAATAATGAAGAACGGCATAGTTACTGATAACTAATCATCTGGGTATTGACTCTATAATGAGAACAATTTTACAAATACCAAAATCAGTATAATAGTTTTGTCCCAGATATAGTTAAATAGCTGTGGGCCTGATGGATTTCAGGATGTCATCATGGAAATACAAATGCATTTCAACTTAGCACAACTATGGTTATCCAACTTATTGGCAGGTCAATTCAATTAATGTTGTATACTCAACCAGAAATGCTTATTTTTTTTGCTTTGCTTTCTATGACCCCAATTTGAAATGGCCACAACTCACAACcacccaaaataaataaataatggacATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254549 lncRNA upstream 890 10263397 ~ 10266860 (+) False LOC110508861
TU254550 lncRNA upstream 890 10265404 ~ 10266860 (+) True LOC110508861
TU254548 lncRNA upstream 2474 10263242 ~ 10265276 (+) False LOC110508861
TU254551 lncRNA upstream 2474 10263397 ~ 10265276 (+) False LOC110508861
TU254577 lncRNA upstream 114055 10153218 ~ 10153695 (+) True G222879
TU254610 lncRNA downstream 13245 10289421 ~ 10289629 (+) True G222910
TU254611 lncRNA downstream 14376 10290552 ~ 10290846 (+) True G222911
TU254616 lncRNA downstream 22972 10299148 ~ 10299461 (+) True G222916
TU254621 lncRNA downstream 26028 10302204 ~ 10303215 (+) True G222918
TU254623 lncRNA downstream 28688 10304864 ~ 10305088 (+) True G222919
XM_021589732.2 mRNA upstream 848 10245328 ~ 10266902 (+) False LOC110508861
XM_021589689.2 mRNA upstream 27786 10233152 ~ 10239964 (+) True LOC110508838
XM_036968400.1 mRNA upstream 40914 10191380 ~ 10226836 (+) True LOC110508830
XM_036968398.1 mRNA upstream 40938 10191380 ~ 10226812 (+) False LOC110508830
XM_021589752.2 mRNA downstream 1965 10278141 ~ 10287089 (+) False LOC110508875
XM_021589761.2 mRNA downstream 1976 10278152 ~ 10287089 (+) True LOC110508875
LOC110520828 mRNA downstream 19288 10295464 ~ 10306199 (+) True LOC110520828
XM_021589775.2 mRNA downstream 30672 10306848 ~ 10314535 (+) False LOC110508886
XM_036968518.1 mRNA downstream 64753 10340929 ~ 10363673 (+) False LOC110508924
TU254395 other upstream 354652 9903112 ~ 9913098 (+) True sphk2
TU253897 other upstream 585998 9679760 ~ 9681752 (+) True G222353
TU253887 other upstream 656611 9606305 ~ 9611139 (+) True G222345
TU253820 other upstream 760964 9502604 ~ 9506786 (+) False LOC110520820
TU253800 other upstream 822046 9445047 ~ 9445704 (+) True G222287
TU254625 other downstream 35506 10311682 ~ 10312252 (+) True LOC110508886
TU255198 other downstream 440475 10716651 ~ 10750403 (+) False LOC110520833
TU255234 other downstream 477441 10753617 ~ 10767669 (+) False LOC110520833
TU255248 other downstream 477441 10753617 ~ 10767669 (+) False LOC110520833
TU255286 other downstream 493497 10769673 ~ 10826411 (+) False cacng8b

Expression Profile