RNA id: XM_036968540.1


Basic Information

Item Value
RNA id XM_036968540.1
length 2363
RNA type mRNA
GC content 0.50
exon number 10
gene id pitpnc1b
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10396551 ~ 10413072 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggagagggaggagtgccGAGCAGAGAGCGAGGTTACACATGAGAGCAGTCCAGAGAACGAAAGTAAGAGAgacagaggcgagagagagaataGCAGGACAGGTACGATAGTGTGGATTATGGAGTTGAGAAGGTTTCAGTCTTACCTCACAAGTTAATTACCTGTTGCTCACTGGAGGAGAACAAAGAAAAGTGGAGAAAAAAGAAAGAGTAAACAATAAGGGcaacggagaaagagagagaggcagaggggaaaaccaggggtagagagagggcgggagatagggagaggggggaacaaggggtagagagaaagggaaggacaACAGTTGAATGTTGACAGAGGGAGTGAGGATATTAATCGGGAGATGAACAAAAAGGAGAGGGCAAAAAGAGAAAGTGTATAGAAAAACGAATAGATTCACATTGACAGAGTGGACTGGACTTCAATGAAGCATCAGCAAAATaaagggtgagagaaagagaaaggtcaCTGCAGTAGGTGCTGTGCACTATAGTTCCTTAAGCACGCTTACTATGCAACAGGAGAGTTAGGACACgcaaagacagacagacgttcACTACACGATTGAACCATGTTGATGAAGGAGTATAGAATATGCATGCCACTAACTGTGGAAGAgtataagATTGGGCAGCTGTACATGATCAGTAAACACAGTAATGAGCAGagcggaggaggggagggagtggaggtGGTGAGGAACCAACCAGACACACATCCCCAACATGGCCTGGGACAGCTCACTGAGAAACGCATCTACCTCAATAGtaaACTGCCATCCTGGGTGAGTGTGTTTGTCCCCAGGGTCTTCTATGTGACAGAGAAGGCCTGGAACTTCTACCCTTACACCATCACAGAGTACTCGGTCTCCTTCCTTCCCAAGTTCAGCATCCGTATTGAGACCAGGTTTGAGAACAACAATGGTGACAACAATAATGTATTTGGAGACAGGCCCACCCCTGCAGAGAGCGTGAGCCACCTGGATATCCTCATTGACCCCATCCCTGACAAACACTACAAGGAGACAGAGgacCTGAGTCGCTGGGTGTCTGAGAAGACGGGCCGAGGCCCCCTGGTGGAAGGGTGGCGTAAGGACAGCACCCCCATCATGTGTTCCTATAAGAGGGTGCAGTGCAGTTTCGAAGTCTATGGCTTCCAGGGCAAGACTGAGGACTTCATACACAGGAACATCCAGGACATCCTACTGGTGGGGCACAGACAGGCTGTGGCCTGGACAGACGAATGGCACGGGATGAGTTTGGAGGATGTGAGAGAGTATGAGCGACAGATACAGGAACAGACCAACAGCAAACTCAAATCAacccagaacaacaacacagCAGCCCCTCGTCCGGCATACTCGCGCTCTATGTCCGTCACAGATGAGCGCTCTCTGAAGAAGATGGGAGTGAAGACTATGGCCATGTCagacccctccacctccacactgcCTCATAGCACTGTCCGCCTTAACTCCACCCCCGAGTAACACACACACGTTCATACTGATGCATCAATTCCTGCCTGCTTAAACCCCTCCGTGACAGTAACTACACTGCAGCAGTTCCTTTTTGTTTTACGGCCATCCACCACAGACACATTTAACCAATAACGCTACACTGTCCACAGAAGCAGCACTTAGACCACTCAGGTCCTACCCCTTTCTCCAGCTGTAACTATATAACACAACCCCCAGTCCTACCCCTTTCTCCAGCTGTAACTATATAACCCAACCCCCTGTCCTACCCCTTTCTCCAGCTGTAACTATATAACCCAACCCCCTGTCCTACCCCTTTCTCCAGCTGTAACTATATAACCCAACCCCCTGTCCTACCCCTTTCTCCAGCTGTAACTATATAACCCAACCCCCTGTCCTACCCCTTTCTCCAGCTGTAACTATATAATCCAACCCCCAGTCCTACCCCTTTCTCCAGCTGTAACTATATAACCCAACCCCCTGTCCTACCCCTTTCTCCAGCTGTAACTATATAACCCAACCCCCTGTCCTACCCCTTTCTCCAGCTGTAACTATATAACCCAACCCCCTGTCCTACCCCTTTCTCCAGCTGTAACTATATAACCCAACCCCCTGTCCTACCCCTTTCTCCAGCTGTAACTATATAACCCAACCCCCTGTCCTACCCCTTTCTCCAGCTGTAACTATATAACCCAACCCCCTGTCCTACCCCTTTCTCCAGCTGTAACTATATAACCCAACCCCCTGTCCTACCCCTTTCTCCAGCTGTAACTATATAACCCAACCCCCTGTCCTACCCCTTTCTCCAGCTGTAACTATATAACCCAACCCCCTGTCCTACCCCTTTCTCCAGCTGTAact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254997 lncRNA downstream 2263 10394478 ~ 10394801 (-) True G223230
TU254994 lncRNA downstream 4752 10392100 ~ 10392312 (-) True G223227
TU254992 lncRNA downstream 5363 10391472 ~ 10391701 (-) True G223225
TU254989 lncRNA downstream 9692 10387102 ~ 10387372 (-) True G223222
TU254975 lncRNA downstream 32420 10364440 ~ 10364644 (-) True G223208
TU255395 lncRNA upstream 4193 10414679 ~ 10415055 (-) True G223477
TU255423 lncRNA upstream 58367 10468853 ~ 10469093 (-) True G223504
TU255428 lncRNA upstream 63641 10474127 ~ 10499047 (-) False G223508
TU255427 lncRNA upstream 64341 10474827 ~ 10499047 (-) True G223508
TU255438 lncRNA upstream 71009 10481495 ~ 10482430 (-) True G223515
XM_021589664.2 mRNA downstream 167655 10226896 ~ 10229409 (-) True LOC110508823
XR_005040846.1 mRNA downstream 205293 10191357 ~ 10191771 (-) True LOC118945753
XM_021589640.2 mRNA downstream 216815 10167784 ~ 10180249 (-) False flcn
XR_005040845.1 mRNA downstream 216815 10167784 ~ 10180249 (-) True flcn
XM_021589630.2 mRNA downstream 233097 10160334 ~ 10163967 (-) True LOC110508798
XM_021589877.2 mRNA upstream 421080 10831566 ~ 10847242 (-) True LOC110508947
XM_036968611.1 mRNA upstream 443216 10853702 ~ 10865260 (-) False LOC110508966
XM_036968606.1 mRNA upstream 443216 10853702 ~ 10865261 (-) False LOC110508966
XM_036968615.1 mRNA upstream 443216 10853702 ~ 10865261 (-) False LOC110508966
XM_036968608.1 mRNA upstream 443216 10853702 ~ 10865262 (-) True LOC110508966
TU254793 other downstream 373861 10020648 ~ 10023203 (-) False LOC110508724
TU254794 other downstream 373879 10020648 ~ 10023185 (-) True LOC110508724
TU254805 other downstream 382172 10012961 ~ 10014892 (-) True G223070
TU254786 other downstream 394170 10001415 ~ 10002894 (-) False LOC110508696
TU254343 other downstream 713693 9679908 ~ 9683371 (-) False LOC110534283
TU255954 other upstream 660460 11070946 ~ 11073750 (-) False znf628
TU255996 other upstream 761634 11172120 ~ 11174367 (-) True G223942
TU256045 other upstream 865431 11275917 ~ 11278628 (-) False G223969
TU257101 other upstream 1316876 11727362 ~ 11741584 (-) True LOC110509576
TU257113 other upstream 1342365 11752851 ~ 11753680 (-) False G224869

Expression Profile